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Assessing the population genetic structure of introduced rainbow trout (Oncorhynchus mykiss) in the Lake Tahoe basin: A case for understanding hybridization potential during the reintroduction of the native Endangered Species Act listed Lahontan cutthroat trout (O. clarkii henshawi)
<p class="MsoNormal">Hybridization with introduced or invasive species is a major threat and driver of population declines in native salmonids. The rainbow trout (<em>Oncorhynchus mykiss</em>, RBT) has been widely introduced globally and represents an important invasive species, often establishing entrenched naturalized populations. The cutthroat trout (<em>Oncorhynchus clarkii</em>, CT), a close congener, is particularly susceptible to competition and hybridization from RBT introductions which has led to range-wide population declines and loss of CT genetic variation. The Lahontan CT (<em>O. c. henshawi</em>, LCT) whose historic distribution included the Lake Tahoe basin, was extirpated by the 1940s due to overfishing and introduction of nonnative salmonids, including now naturalized RBT. Here, we characterize genetic variation of RBT in a subset of Lake Tahoe tributaries to assess potential homing of RBT to streams for spawning, thereby informing LCT reintroduction. Diploid reproductively viable RBT were stocked annually into Lake Tahoe from the late 1800s until the mid-2000s by California and Nevada fish and wildlife agencies, planting the same commonly raised hatchery strains over time. Since 2007, triploid RBT comprise the bulk of RBT planted. Despite extensive dispersal from stocking locations, our analyses revealed variation in population differentiation among tributaries, with individuals from spatially proximate streams clustering across multiple population genetic analyses. Although subtle, we detected evidence for genetic differentiation among tributaries from the southern, western, and northern regions, including surprising structure involving a single tributary. These results illustrate the extent of differentiation within and among streams and could inform possibilities for and implications of RBT removal and LCT reintroduction.</p>
FIGURE 2 in Cynosurus peltieri (Pooideae, Poaceae), a poorly known species endemic to the Algerian-Tunisian terrestrial flora: further insights on its occurrence, IUCN Red List assessment, and lectotypification
FIGURE 2. Cynosurus polybracteatus in its habitat in Kroumirian area. A. Habit of the plant. B–C. Details of its unilateral and linear, indistinctly lobed panicle, with very short branches. All photographs were taken by Ridha El Mokni in Tabarka (Jendouba, NW of Tunisia, North Africa), 14 May 2013 and 3 May 2017.
FIGURE 1 in Cynosurus peltieri (Pooideae, Poaceae), a poorly known species endemic to the Algerian-Tunisian terrestrial flora: further insights on its occurrence, IUCN Red List assessment, and lectotypification
FIGURE 1. Cynosurus peltieri in its typical habitat in Kroumirian oak forests. A. Habit of the plant. B. Detail of its unilateral and linear, clearly lobed panicle. All photographs were taken by Ridha El Mokni in Aîn Zana-Aîn Draham (Jendouba, NW of Tunisia, North Africa), 16 June 2020.
List of benthic macroinvertebrate taxa from the upper Paraná River floodplain: summarizing information from a literature search
<p>We created a checklist of benthic macroinvertebrates taxa found in the environments of the upper Parana River floodplain according to the information found in published articles. The checklist data presents the taxa list, the substrate type, the environment type, and the year that each taxon was initially recorded for the region. We searched for data on aquatic macroinvertebrates recorded in the upper Paraná River floodplain by reviewing published articles and reports (grey literature). We took data from an extensive literature search at the ISI Web of Knowledge, SciELO, and Scopus websites, using the keyword combination “upper Paraná River” or “Paraná River” and “floodplain” or “wetland” and “macroinvertebrate*” for the search. We selected articles published between 1990 and 2020. We selected the articles following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) model (Liberati et al., 2009) and considered the selection in four steps: (1) the country of the study, (2) the title, (3) the abstract, and (4) the full text. The selection of papers followed some eligible parameters such as type of organisms, study area, and the presence of taxa data. During the selection, we excluded macroinvertebrates recorded as parasites or those found in studies of vertebrate feeding habits. Articles that contained these two criteria were excluded from the analyses. The articles that remained were analysed regarding the type of substrate where the macroinvertebrates were recorded (i.e., sediment, macrophytes, or artificial substrates), type of environment where each taxon was found (i.e., lentic or lotic environment), and the year in which each taxon was recorded for the first time in the upper Paraná River floodplain.</p>
S9 | PFASTRIER | PFAS Suspect List: fluorinated substances
<p>This is the collection associated with list S9 PFASTRIER on the NORMAN Suspect List Exchange.</p> <p><a href="https://www.norman-network.com/nds/SLE/">https://www.norman-network.com/nds/SLE/</a></p> <p>S9 PFASTRIER <strong>PFAS Suspect List: fluorinated substances</strong></p> <p>Kindly supplied by Xenia Trier, David Lunderberg and colleagues.<br> Reference information contained in files.</p> <p>Nov 14 2019 update: added extra CSV for PubChem import. 12 March 2022 update: removed InChIKey duplicates and solvents from IK file.</p> <p> </p>
Distribution Known only from Peninsular Malaysia, including Selangor (Ulu Gombak) and Pahang (Sungai Tekam Forest Reserve, Gunung Benom, and Krau Wildlife Reserve) provinces. Also listed from Fraser's Hill Forest Reserve, Pahang; but this record needs verification. in Vespertilionidae
Distribution Known only from Peninsular Malaysia, including Selangor (Ulu Gombak) and Pahang (Sungai Tekam Forest Reserve, Gunung Benom, and Krau Wildlife Reserve) provinces. Also listed from Fraser's Hill Forest Reserve, Pahang; but this record needs verification.
Scopus Paper List as of 15 March 2022
<p>This dataset contains the papers that were found on Scopus using the query "TITLE-ABS-KEY ((Counterfeit OR fraud OR adulteration) AND (“supply chain”) AND (traceability OR tracing)) AND (LIMIT-TO (LANGUAGE, “English”))"</p>
Distribution. Confirmed from NW Africa, the Sahel, and Nile Valley, E through the Middle East and WArabia to NW& C India (E to E Madhya Pradesh, 80° E); with possible distribution spots in E & SE India (indicated byfour mostlyhistorical records). Reportedly common in Bangladesh (yet disproved by recent reports) and retained on species lists of Myanmar, Thailand, and Sumatra without being supported by anyrecent record. in Rhinopomatidae
Distribution. Confirmed from NW Africa, the Sahel, and Nile Valley, E through the Middle East and WArabia to NW& C India (E to E Madhya Pradesh, 80° E); with possible distribution spots in E & SE India (indicated byfour mostlyhistorical records). Reportedly common in Bangladesh (yet disproved by recent reports) and retained on species lists of Myanmar, Thailand, and Sumatra without being supported by anyrecent record.
Distribution. Known from two localities in SW Ecuador (El Oro Province); more recently, it has been recorded in the Pacific coast of Colombia (Choco and Valle del Cauca departments), and NW Peru (Tumbes Department). Known distribution is changing as existing specimens from NW South America (listed as S. Lilium parvidens) are reidentified as this species; new geographic and ecological information is being gathered in the process, and it could be locally common at some specific habitats. in Phyllostomidae
Distribution. Known from two localities in SW Ecuador (El Oro Province); more recently, it has been recorded in the Pacific coast of Colombia (Choco and Valle del Cauca departments), and NW Peru (Tumbes Department). Known distribution is changing as existing specimens from NW South America (listed as S. Lilium parvidens) are reidentified as this species; new geographic and ecological information is being gathered in the process, and it could be locally common at some specific habitats.
Data of event list of cold and hot patches for manuscript "The Dependence of Cold and Hot Patches on Local Plasma Transport and Particle Precipitation in Northern Hemisphere Winter"
<p>A database of 4,634 cold patches (high density and low electron temperature) and 4,700 hot patches (high density and high electron temperature) from Defense Meteorological Satellite Program F16 in 2005-2018 winter months.</p>
Supplementary File S1. Taxon list SMTP.
<p>Supplementary File S1</p> <p>Material from the collection of the Swedish Malaise trap project used for the study: Open access in a taxonomic sense: a morphological and molecular guide to Western Palaearctic Dusona (Hymenoptera, Ichneumonidae).</p> <p> </p>
Supplementary File S2. Taxon list CH
<p>Supplementary File S2</p> <p>Material from the Swiss natural history museums in Basel and St. Gallen used for the study: Open access in a taxonomic sense: a morphological and molecular guide to Western Palaearctic Dusona (Hymenoptera, Ichneumonidae).</p> <p> </p>
FIGURES 35–57 in A preliminary list of the Pyraloid moths (Lepidoptera: Pyraloidea) of Kyrgyzstan
FIGURES 35–57. Selected Pyraloid moths of Kyrgyzstan. Scale bar = 1 cm. 35–39, Pediasia kuldjaensis (Caradja, 1916), variability, Karakol. 40–44, Acrobasis khachella (Amsel, 1950), variability, Koro-Goo. 45, Udea juldusalis (Zerny, 1914), Ala- Archa. 46, 47, Mecyna salangalis Amsel, 1970, Karakol (46), Archaly (47). 48, Catoptria xerxes (Sauber, 1904), Karakol. 49, Gymnancyla craticulella Ragonot, 1887, Toktogul. 50, Xanthocrambus argentarius (Staudinger, 1867), Karakol. 51, Metacrambus jugaraicae Błeszinsky, 1965, Sarban. 52, Vietteia terstrigella (Christoph, 1877), Kulanak. 53, 54, 56, 57, Pyrausta aerealis (Hübner, 1793), variability; 53—Karakol, 54—Koro-Goo, 56—Kazakhstan, Transili Alatau Mts., near Almaty, 57—Ala-Too. 55, Evergestis vagabundalis Christoph, 1887, Kok-Jar.
FIGURES 2–9. Kyrgyzstan, Pyraloid moths habitats. 2 in A preliminary list of the Pyraloid moths (Lepidoptera: Pyraloidea) of Kyrgyzstan
FIGURES 2–9. Kyrgyzstan, Pyraloid moths habitats. 2, Dzhumgaltoo Mts., Sary-Kaiky gorge, mountainous steppe with Stipa sp. 3, Dzhumgaltoo Mts., Kekemeren river valley, badland near river coast. 4, Kirghiz Mts., vicinity of Arashan, mountainous mixed grass steppe. 5, Kirghiz Mts., Ala-Archa valley, mixed forest. 6, Kirghiz Mts., Ala-Too environs, overgrazed mountainous steppe. 7, Moldo-Too Mts., Kara-Keche coal mine, overgrazed subalpine meadow. 8, Moldo-Too Mts., Koro-Goo Pass, eastern part, dry subalpine meadows with Juniperus semiglobosa. 9, Moldo-Too Mts., Koro-Goo Pass, central part, dry subalpine meadows with bushes of Rosa sp. and Spiraea sp.
FIGURES 18–34 in A preliminary list of the Pyraloid moths (Lepidoptera: Pyraloidea) of Kyrgyzstan
FIGURES 18–34. Selected Pyraloid moths of Kyrgyzstan. Scale bar = 1 cm. 18, Phycita aceris Sherniyazova, 1974, Ala- Too. 19, Euchromius gratiosellus (Caradja, 1910), Kulanak. 20, Euchromius scobiolae Błeszińsky, 1965, Tortkol. 21, Evergestis anartalis (Staudinger, 1892), Tee-Ashuu. 22, Ancylosis harmoniella (Ragonot, 1887), Koro-Goo. 23, Psorosa majorella Roesler, 1970, Toktogul. 24, Cynaeda furiosa Hampson, 1900, Karakol. 25, Evergestis kopetdagensis Kuznetsov, 1958, Arashan. 26, Staudingeria morbosella Staudinger, 1879, Urumbash. 27, Crambus pascuellus (Linnaeus, 1758), Alai. 28, Pyrausta pionalis Toll, 1948, Koro-Goo. 29, Titanio pulchellalis (Staudinger, 1892), syntype. 30, Ancylosis pyrethrella (Herrich-Schäffer, 1860), Osh. 31, Euzophera alpherakyella Ragonot, 1887, Kok-Jar. 32, Homoeosoma subalbidellum (Mann, 1861), Ala-Too. 33, Pediasia alaica (Rebel, 1907), Kaindy. 34, Euzophera ultimella Roesler, 1973, Toktogul.
FIGURES 10–17. Kyrgyzstan, Pyraloid moths habitats. 10 in A preliminary list of the Pyraloid moths (Lepidoptera: Pyraloidea) of Kyrgyzstan
FIGURES 10–17. Kyrgyzstan, Pyraloid moths habitats. 10, Southern shore of Issyk-Kul Lake, near Ottuk, floodplain meadows. 11, Moldo-Too Mts., Koro-Goo Pass, western part, dry steppe with Artemisia sp. and Kobresia sp. 12, Alai Mts., Taldyk Pass, subnival meadows. 13, Terskey Ala-Too Mts., near Aksu, wet subalpine meadows. 14, Baidulu Mts., Dolon Pass, floodplain subalpine meadows. 15, Sandalashsky Mts., Sary-Chelek Nature Reserve, dry steppe near spruce forest. 16, Terskey Ala-Too Mts., Kok-Moynok locality near Orto-Tokoi reservoir, mountainous semidesert. 17, Dzhumgaltoo Mts., West Karakol river valley, mountainous steppe with Salix sp., Rosa sp., Spiraea sp.
Distribution. NE Madagascar, extremely limited distribution in the far N of the island, just to the S of Antsiranana (= Diégo-Suarez), it was formerly believed to inhabit both dry and humid forests from the Montagne d' Ambre region S to the Mahavavy River near Ambilobe in the W, and probably to the Fanambana River S of Vohémarin the E. However, with the recognition of the Ankarana Sportive Lemur (L. ankaranensis) as a distinct species, the range of the Sahafary Sportive Lemur was reduced to a handful of very small remnant forest patches nearthe villages of Madirobe and Ankarongana in the Sahafary region, and in the immediate vicinity of Andrahona, a small mountain rising out of the surrounding lowlands about 30 km south of Antsiranana and E of the RN6 main road. Recent faunal surveys in the Montagne des Francais, a calcareous massif of c.6114 ha approximately 12 km SE of Antsiranana, listed the Sahafary Sportive Lemur as one of the species occurring there, but this needs to be confirmed; it may be widerranging than the Ankarana Sportive Lemur. in Lepilemuridae
Distribution. NE Madagascar, extremely limited distribution in the far N of the island, just to the S of Antsiranana (= Diégo-Suarez), it was formerly believed to inhabit both dry and humid forests from the Montagne d' Ambre region S to the Mahavavy River near Ambilobe in the W, and probably to the Fanambana River S of Vohémarin the E. However, with the recognition of the Ankarana Sportive Lemur (L. ankaranensis) as a distinct species, the range of the Sahafary Sportive Lemur was reduced to a handful of very small remnant forest patches nearthe villages of Madirobe and Ankarongana in the Sahafary region, and in the immediate vicinity of Andrahona, a small mountain rising out of the surrounding lowlands about 30 km south of Antsiranana and E of the RN6 main road. Recent faunal surveys in the Montagne des Francais, a calcareous massif of c.6114 ha approximately 12 km SE of Antsiranana, listed the Sahafary Sportive Lemur as one of the species occurring there, but this needs to be confirmed; it may be widerranging than the Ankarana Sportive Lemur.
Broad exome calling interval list
<p>Exome calling interval list (v1, GRCh38) used by the Broad Institute</p>
Nesokia is sister to Bandicota and are nested in Rattus phylogenetically, making Rat- tus paraphyletic. Tarsomys, Limnomys, and Diplothrix are also phylogenetically in Rat- tus, and the clade is in need of focused re- vision at the generic level. Nesokia bunnui was originally described as a separate ge-nus, Erythronesokia, because it is morphologically very distinctive from N. indica. Type specimen was destroyed during the Iraq War, and a neotype was recently designated to replace it. Monotypic. Distribution. Tigris and Euphrates river valleys, SE Iraq. Descriptive notes. Head—body 230-260 mm, tail 205-270 mm, ear 18-21 mm, hindfoot 49-58 mm; weight 519 g. The Long-tailed Bandicoot Rat is larger than the Short-tailed Bandicoot Rat (N. indica). Pelage is soft and woolly, interspersed with harsher coarse hair and long black hairs near mid-back. Dorsum is fawn to ocherous red, washed with purple or chestnuton darker individuals. Hairs are basally slate-gray and distally rufous, occasionally with whitish or black tips. Muzzle is drab. Sides arefawn, with gray edge toward venter. Venteris whitish, extending onto cheeks where the same pattern from gray to fawn to dorsal pelage occurs. Feet are large and robust, being light brown and well-furred dorsally. Claws are amber on forefeet and dull brown on hindfeet; pollux is extremely small. Ears are moderately long and brownish, with no hair internally. Tail is ¢.82-104% of head-body length and deep brownish drab, interspersed with visible white hair. Skull is large and robust, similarly to the Short-tailed Bandicoot Rat. Habitat. Marsh and swamp land. Food and Feeding. No information. Breeding. No information. Activity patterns. The Long-tailed Bandicoot Rat is terrestrial, although it isfound in swampy and marshy areas and is probably amphibious. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Endangered on The IUCN Red List. The Longtailed Bandicoot Rat is apparently rare and is known from very few specimens. Marsh and swamp habitats in which it is found were completely destroyed during the Iraq War by draining, war damage, and agricultural expansion. In recent years, flooding from Tigris and Euphrates rivers and high snow fall and melt haveresulted in partial restoration ofits native habitat, although restoration is not a complete. Populations are now probably highly fragmented. Bibliography. Al-Ansari et al. (2012), Al-Robaae & Felten (1990), Khajuria (1981), Krystufek et al. (2017), Musser & Carleton (2005), Richardson & Hussain (2006), Stuart (2008). in Muridae
Nesokia is sister to Bandicota and are nested in Rattus phylogenetically, making Rat- tus paraphyletic. Tarsomys, Limnomys, and Diplothrix are also phylogenetically in Rat- tus, and the clade is in need of focused re- vision at the generic level. Nesokia bunnui was originally described as a separate ge-nus, Erythronesokia, because it is morphologically very distinctive from N. indica. Type specimen was destroyed during the Iraq War, and a neotype was recently designated to replace it. Monotypic. Distribution. Tigris and Euphrates river valleys, SE Iraq. Descriptive notes. Head—body 230-260 mm, tail 205-270 mm, ear 18-21 mm, hindfoot 49-58 mm; weight 519 g. The Long-tailed Bandicoot Rat is larger than the Short-tailed Bandicoot Rat (N. indica). Pelage is soft and woolly, interspersed with harsher coarse hair and long black hairs near mid-back. Dorsum is fawn to ocherous red, washed with purple or chestnuton darker individuals. Hairs are basally slate-gray and distally rufous, occasionally with whitish or black tips. Muzzle is drab. Sides arefawn, with gray edge toward venter. Venteris whitish, extending onto cheeks where the same pattern from gray to fawn to dorsal pelage occurs. Feet are large and robust, being light brown and well-furred dorsally. Claws are amber on forefeet and dull brown on hindfeet; pollux is extremely small. Ears are moderately long and brownish, with no hair internally. Tail is ¢.82-104% of head-body length and deep brownish drab, interspersed with visible white hair. Skull is large and robust, similarly to the Short-tailed Bandicoot Rat. Habitat. Marsh and swamp land. Food and Feeding. No information. Breeding. No information. Activity patterns. The Long-tailed Bandicoot Rat is terrestrial, although it isfound in swampy and marshy areas and is probably amphibious. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Endangered on The IUCN Red List. The Longtailed Bandicoot Rat is apparently rare and is known from very few specimens. Marsh and swamp habitats in which it is found were completely destroyed during the Iraq War by draining, war damage, and agricultural expansion. In recent years, flooding from Tigris and Euphrates rivers and high snow fall and melt haveresulted in partial restoration ofits native habitat, although restoration is not a complete. Populations are now probably highly fragmented. Bibliography. Al-Ansari et al. (2012), Al-Robaae & Felten (1990), Khajuria (1981), Krystufek et al. (2017), Musser & Carleton (2005), Richardson & Hussain (2006), Stuart (2008).
Distribution. Mt Cameroon, W Cameroon, and Bioko I, Equatorial Guinea. Descriptive notes. Head-body 100- 130 mm, tail 110-147 mm, ear 16-20 mm, hindfoot 21-25 mm; weight 27-62 g. Fur of the Cameroon Soft-furred Mouse is dark rufous-brown to blackish brown above and pale to dark gray below. Tail is very long (c.112% of head-body length) and dark. Hindfeet and forefeet are dark brown. Females have three pairs of nipples. Habitat. Montane forest and alpine grassland at elevations above 1000 m. Food and Feeding. No information. Breeding. Gestation lasts 26-30 days. Litters have 2-6 young. Activity patterns. The Cameroon Soft-furred Mouse is nocturnal and terrestrial. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Endangered on The IUCN Red List. The Cameroon Soft-furred Mouse occurs in two disjunct areas occupying only ¢.2900 km? and the extent and quality of its forest habitat continue to decline. Bibliography. Eisentraut (1970, 1973), Happold (2013a), Missoup et al. (2012), Monadjem etal. (2015). in Muridae
Distribution. Mt Cameroon, W Cameroon, and Bioko I, Equatorial Guinea. Descriptive notes. Head-body 100- 130 mm, tail 110-147 mm, ear 16-20 mm, hindfoot 21-25 mm; weight 27-62 g. Fur of the Cameroon Soft-furred Mouse is dark rufous-brown to blackish brown above and pale to dark gray below. Tail is very long (c.112% of head-body length) and dark. Hindfeet and forefeet are dark brown. Females have three pairs of nipples. Habitat. Montane forest and alpine grassland at elevations above 1000 m. Food and Feeding. No information. Breeding. Gestation lasts 26-30 days. Litters have 2-6 young. Activity patterns. The Cameroon Soft-furred Mouse is nocturnal and terrestrial. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Endangered on The IUCN Red List. The Cameroon Soft-furred Mouse occurs in two disjunct areas occupying only ¢.2900 km? and the extent and quality of its forest habitat continue to decline. Bibliography. Eisentraut (1970, 1973), Happold (2013a), Missoup et al. (2012), Monadjem etal. (2015).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.