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Light curves from Gaia for single stars reported as unresolved binary candidates
<p>Light curves corresponding to the <em>Gaia</em> passbands <em>RP</em> (red), <em>G</em> (green), and <em>BP</em> (blue) for single stars reported as unresolved binary candidates. Isolated outliers (represented by crosses) are photometric errors, not consistent with flares, automatically rejected by variability processing. </p>
Deliverable 6.4 Report on microbial CUE across a soil profile gradient
<p>This deliverable describes experimental data obtained from the Annex 2. EnergyLink Proposal - Addendum submitted on 8th of December 2022. The tasks in WP3, WP4 and WP5 were extended to include sub-soil samples. Specifically, annex 2 focused on exploring whether aboveground diversification affected the microbiome and microbial carbon cycling in top- and subsoil differently. Therefore, in this task, the Clever Cover Cropping experiment (the Netherlands) was sampled at 0-30 cm and 30-60 cm.</p>
CRISPuRe-seq: pooled screening of barcoded ribonucleoprotein reporters reveals regulation of RNA polymerase III transcription by the Integrated Stress Response via mTOR
<p>NAR_Data_Package.zip contains the data required for generating figures, including original gel images for western blots and a step-by-step protocol for CRISPuRe-seq.</p> <p>SupplementaryData.xlsx contains all of the Supplemental Data directly referred to in the manuscript.</p> <p>Plasmid maps.zip contains plasmid maps for constructs used in the manuscript in genbank format.</p> <p>Scripts.zip contains the scripts used for screen processing with a text file explaining their usage.</p> <p>Look_Up_Table.zip contains the look-up-table for decoding barcode and sgRNA pairings.</p>
Transvenous extraction of double dual-coil implantable cardioverter-defibrillator leads – Case report
<p>Abstract: Implantable cardioverter-defibrillator (ICD) is the standard treatment for prevention of sudden cardiac death (SCD) in high-risk patients. Transvenous lead extraction (TLE) is an integral part of management of patients with ICD, since ICD leads are prone to damage in long-term follow-up. TLE is a procedure with high risk of complications. Major complications include haemothorax , thromboembolic events, vascular laceration, cardiac avulsion, and even death, with pericardial tamponade beeing the most common major complication. We report the clinical case of a 54-year-old male patient with a history of chronically implanted ICD who presented with isolated pocket erosion. Cardiac fluoroscopy revealed one dual-coil ICD lead connected to the pulse generator and another dual-coil ICD lead was noted to be fractured, with the proximal end lead remnant in the ICD pocket. Suspicion of pocket infection was raised, therefore the device and the leads extractions were necessary. Dual-coil implantable cardioverter-defibrillator leads are difficult to extract due to fibrotic scar tissue formed around the leads especially near the coils. Transvenous lead extraction technique was used to remove the dual-coil implantable cardioverter-defibrillator leads, without neither major nor minor complications. As ICD therapy was recommended for secondary prophylaxis, a new ICD was implanted on the contralateral side.</p>
Distribution. SE Nigeria, Cameroon, Central African Republic, DR Congo, Equatorial Guinea, Gabon, and PR Congo. Also reported from Angola, but this is rejected by some authors. in Herpestidae
Distribution. SE Nigeria, Cameroon, Central African Republic, DR Congo, Equatorial Guinea, Gabon, and PR Congo. Also reported from Angola, but this is rejected by some authors.
Subspecies and Distribution. H. e. edwardsii Geoffroy Saint-Hilaire, 1818 — SE India and Sri Lanka. H. e. carnaticus Wroughton, 1921 — SW India (Karnatka). H. e. moerens Wroughton, 1915 — Bangladesh, Bhutan, C & NE India, and Nepal. H. e. montanus Bechthold, 1936 — Saudi Arabia to NW India. H. e. pallens Ryley, 1914 — W India (Gujarat). A few old museum specimens are reported from Peninsular Malaysia, whereit is said to have been introduced, butit has not been recorded there since the beginning of the 20" century. in Herpestidae
Subspecies and Distribution. H. e. edwardsii Geoffroy Saint-Hilaire, 1818 — SE India and Sri Lanka. H. e. carnaticus Wroughton, 1921 — SW India (Karnatka). H. e. moerens Wroughton, 1915 — Bangladesh, Bhutan, C & NE India, and Nepal. H. e. montanus Bechthold, 1936 — Saudi Arabia to NW India. H. e. pallens Ryley, 1914 — W India (Gujarat). A few old museum specimens are reported from Peninsular Malaysia, whereit is said to have been introduced, butit has not been recorded there since the beginning of the 20" century.
Dataset for article "Measurement report: Molecular characteristics of cloud water in southern China and insights into aqueous-phase processes from Fourier Transform Ion Cyclotron Resonance Mass Spectrometry"
<p>This dataset is the result of molecular composition of cloud water collected in southern China obtained by ESI FT-ICR MS. This dataset is for the article "Measurement report: Molecular characteristics of cloud water in southern China and insights into aqueous-phase processes from Fourier Transform Ion Cyclotron Resonance Mass Spectrometry" published in Atmospheric Chemistry and Physics by Sun et al. (2021).</p>
FIGURE 1 in First report of Ceratomyxa scorpaeni (Cnidaria: Myxozoa) from Scorpaena porcus in the Black Sea
FIGURE 1 Ceratomyxa scorpaeni infecting the gall bladder of Scorpaena porcus: a disporogonic plasmodium; b transversely elongated mature spore; c crescent shaped mature spore; d the spore drawing.
FIGURE 6 in Molecular phylogeny of Aplosporella abexaminans: a novel species revealing the second report of sexual-asexual connection in Aplosporellaceae (Botryosphaeriales) from India
FIGURE 6. Phylogram generated from Maximum likelihood analysis based on combined genes of ITS and LSU of botryosphaerialean taxa. ML and MP bootstrap support values above 50% and BPP support above 0.50 are indicated above the branches. The newly sequenced collection is in red.
FIGURE 5 in Molecular phylogeny of Aplosporella abexaminans: a novel species revealing the second report of sexual-asexual connection in Aplosporellaceae (Botryosphaeriales) from India
FIGURE 5. Phylogram generated from Maximum likelihood analysis based on ITS region and LSU gene of strains belong to Aplosporellaceae. Kellermania dasylirionicola (CBS 131720) was chosen as outgroup. Bootstrap values for ML and MP above 50% and BPP support above 0.50 are indicated. Red names indicate Aplosporella abexaminans.
FIGURE 4 in Molecular phylogeny of Aplosporella abexaminans: a novel species revealing the second report of sexual-asexual connection in Aplosporellaceae (Botryosphaeriales) from India
FIGURE 4. Asexual morph of Aplosporella abexaminans on PDA (NFCCI 5010, ex-type culture). a. Colony on PDA from above. b. Colony on PDA from below. c, d. Initial stage of germinated ascospores on PDA. e, f. Development of hyphae from germinated ascospores on PDA. g. Verruculose hyphae. h. Smooth hyphae. i–m. Conidia. n, o. Chlamydospores (yellow arrows). Scale bars a, b = 20 mm, c–o = 10 µm.
FIGURE 2 in Molecular phylogeny of Aplosporella abexaminans: a novel species revealing the second report of sexual-asexual connection in Aplosporellaceae (Botryosphaeriales) from India
FIGURE 2. Sexual morph of Aplosporella abexaminans (AMH 10212, holotype). a–e Vertical sections through ascostromata. f. Released asci from ascostromata. g, h. Ascus released from an additional sac like structure (blue arrows). Scale bars a, b = 200 µm, c = 100 µm, d–h = 50 µm.
FIGURE 1 in Molecular phylogeny of Aplosporella abexaminans: a novel species revealing the second report of sexual-asexual connection in Aplosporellaceae (Botryosphaeriales) from India
FIGURE 1. Stem of Murraya koenigii. a, b. Habit of ascostromata on the bark of host stem. Scale bars a, b = 5 mm.
Virtual Screening and Testing of GSK-3 Kinase Inhibitors Using human SH-SY5Y Neuronal cells Expressing Tau Folding Reporter and Mouse Hippocampal Primary Neuron Culture Under Tau Cytotoxicity
<p>Supplementary Figure S1. for IJMS</p>
Figure 3 in A new subfamily for a clade of opecoelids (Trematoda: Digenea) exploiting marine fishes as second-intermediate hosts, with the first report of opecoelid metacercariae from an elasmobranch
Figure 3. The pylogenetic pattern of second-intermediate host groups, including Amphipoda, Cephalopoda, Chondricthyes, Decapoda, Echinoidea, Gastropoda, Hirudinea, Insecta, Oligochaeta and Osteichthyes, exploited by the Opecoelidae, constructed through maximum likelihood analysis of partial 28S ribosomal DNA data, with two brachycladioids forming the outgroup. Taxa in collapsed clades and GenBank accession numbers for all taxa are listed in Table 3. New sequence data are in bold. Support values <50% are omitted. Scale bar indicates the number of substitutions per site.
Distribution. Throughout mainland SE Asia, from C & S Myanmar to W & SE Thailand, C & S Laos, Cambodia, C & S Vietnam, and Peninsular Malaysia; also present in Borneo, Sumatra, Java, Bali, Lombok, and several adjacent small islands. Most likely extinct from E Bangladesh, where it has not been reported for more than 40 years. Northern and western limits of its range are poorly known. in Manidae
Distribution. Throughout mainland SE Asia, from C & S Myanmar to W & SE Thailand, C & S Laos, Cambodia, C & S Vietnam, and Peninsular Malaysia; also present in Borneo, Sumatra, Java, Bali, Lombok, and several adjacent small islands. Most likely extinct from E Bangladesh, where it has not been reported for more than 40 years. Northern and western limits of its range are poorly known.
Distribution. Balabac, Ramos, and Bugsuk Is, Palawan region, Phillipines. In the late 1990s, a small stock of eight Balabac Chevrotains escaped from their enclosures on Calauit Island, a small island off the coast of Busuanga Island, north of Palawan, where the species had been maintained and bred since 1982. These animals were reported to have increased to at least 21 free-living individuals by 2006. Apparently the species was also introduced to the larger island of Palawan. No recent records confirm that it is still extant there, although unconfirmed reports suggest that it may survive in southern Palawan. in Tragulidae
Distribution. Balabac, Ramos, and Bugsuk Is, Palawan region, Phillipines. In the late 1990s, a small stock of eight Balabac Chevrotains escaped from their enclosures on Calauit Island, a small island off the coast of Busuanga Island, north of Palawan, where the species had been maintained and bred since 1982. These animals were reported to have increased to at least 21 free-living individuals by 2006. Apparently the species was also introduced to the larger island of Palawan. No recent records confirm that it is still extant there, although unconfirmed reports suggest that it may survive in southern Palawan.
Distribution. Java. Several biogeographic reviews failed to list the genus for Bali, an island directly east of Java with strong biogeographic affinities to the latter. A sighting was, however, reported from Bali Barat National Park, in a birdwatching trip report. Given the live-animal trade of this species on Java, further records are needed to confirm whether or not there is a native population of the genus on Bali. If there is, biogeographic considerations suggest it would be most closely related to the Javan population and quite probably conspecific. in Tragulidae
Distribution. Java. Several biogeographic reviews failed to list the genus for Bali, an island directly east of Java with strong biogeographic affinities to the latter. A sighting was, however, reported from Bali Barat National Park, in a birdwatching trip report. Given the live-animal trade of this species on Java, further records are needed to confirm whether or not there is a native population of the genus on Bali. If there is, biogeographic considerations suggest it would be most closely related to the Javan population and quite probably conspecific.
Subspecies and Distribution. T.n.napuF.Cuvier,1822—SMyanmar,Thai/MalayPeninsula,islandsoffWMalayPeninsula(Langkawi&Pangkor),Borneo,SSumatra,BangkaI,islandsoffBorneo(Laut&Serasan). T.n.bangue:Chasen&Kloss,1931—BanggiIandBalembanganI,offNBorneo. T.n.bunguranensisMiller,1901—NatunaIs(=Bunguran),oftWBorneo. T.n.neubronneriSody,1931—NSumatra. T.n.nmiasisLyon,1916—NiasI,offWSumatra. T.n.rufulusMiller,1900—TiomanI,offEMalayPeninsula,RiauandLinggaArchipelagos. T. n. terutus Thomas & Wroughton, 1909 — Terutau I, off W Malay Peninsula. The species was recently reconfirmed for Singapore. Maps that include Vietnam, Cambodia, and Laos in the distribution range are based on the earlier assumption that 7. versicolor was a subspecies of 1. napu. Subsequent studies have indicated that 7. versicolor is a distinct species, and that the range of 1. napu therefore does not extend into Cambodia, Laos, and Vietnam. The northern limit on the Thai-Malay peninsula is not well defined. Specimens of 1. napu have been collected from as far north as Bankachon in southern Myanmar (10° 08" N), but despite fairly intensive camera-trapping in Kui Buri National Park, Thailand (12° N), 7. napu has not been photographed there. At the northern margin ofits range, it is generally rare. It has been reported, for example, that during the flooding of the Chiew Larn Reservoir (Surat Thani Province; about 9° N, 98° 45' E), only six 7. napu were rescued compared with 172 71. kanchil. This area is the transition zone from wetter evergreen forest to drier deciduous types, and it might be that 7° napu is not well adapted to the drier forest types towards the northern limit ofits range. There are unconfirmed reports of the species on Java, where it may have been confused with one of the two color morphs of 7. javanicus. As explained in the Taxonomy section, the subspecific status of the populations of several islands remains unclear. in Tragulidae
Subspecies and Distribution. T.n.napuF.Cuvier,1822—SMyanmar,Thai/MalayPeninsula,islandsoffWMalayPeninsula(Langkawi&Pangkor),Borneo,SSumatra,BangkaI,islandsoffBorneo(Laut&Serasan). T.n.bangue:Chasen&Kloss,1931—BanggiIandBalembanganI,offNBorneo. T.n.bunguranensisMiller,1901—NatunaIs(=Bunguran),oftWBorneo. T.n.neubronneriSody,1931—NSumatra. T.n.nmiasisLyon,1916—NiasI,offWSumatra. T.n.rufulusMiller,1900—TiomanI,offEMalayPeninsula,RiauandLinggaArchipelagos. T. n. terutus Thomas & Wroughton, 1909 — Terutau I, off W Malay Peninsula. The species was recently reconfirmed for Singapore. Maps that include Vietnam, Cambodia, and Laos in the distribution range are based on the earlier assumption that 7. versicolor was a subspecies of 1. napu. Subsequent studies have indicated that 7. versicolor is a distinct species, and that the range of 1. napu therefore does not extend into Cambodia, Laos, and Vietnam. The northern limit on the Thai-Malay peninsula is not well defined. Specimens of 1. napu have been collected from as far north as Bankachon in southern Myanmar (10° 08" N), but despite fairly intensive camera-trapping in Kui Buri National Park, Thailand (12° N), 7. napu has not been photographed there. At the northern margin ofits range, it is generally rare. It has been reported, for example, that during the flooding of the Chiew Larn Reservoir (Surat Thani Province; about 9° N, 98° 45' E), only six 7. napu were rescued compared with 172 71. kanchil. This area is the transition zone from wetter evergreen forest to drier deciduous types, and it might be that 7° napu is not well adapted to the drier forest types towards the northern limit ofits range. There are unconfirmed reports of the species on Java, where it may have been confused with one of the two color morphs of 7. javanicus. As explained in the Taxonomy section, the subspecific status of the populations of several islands remains unclear.
Distribution. Sulawesi and adjacent Is (Buton, Kabaena, Muna, Peleng, Lembeh, and on some of the Togian Is); thought to be extinct on Selayar I. Pigs have been widely domesticated through the Indonesian archipelago and beyond. This primarily involved the Eurasian Wild Pig (S. scrofa), but also S. celebensis, the only other species of pig successfully domesticated. Mitochondrial DNA studies of the dispersion of these domesticated forms agree on three major dispersal events, two involving S. scrofa and one S. celebensis. Evidence supports an early human-mediated translocation of S. celebensis to Flores and Timor and two later, separate human-mediated dispersals of domestic pig through islands of SE Asia into Oceania. In addition to Flores and Timor, S. celebensis is also thought to occur in its domesticated form on Halmahera, Lendu, Roti, and Savur Is, and even on Simeulue and Nias Is to the W of Sumatra and far from its island of origin, Sulawesi. In the Moluccas, and possibly elsewhere in this region, introduced S. celebensis are thought to have hybridized with other introduced pigs of S. scrofa derivation, and apparent hybrids between these species are now reported to survive on a number of islands, including Salawatti, Great Kei, Dobu, Seram, Ambon, Bacan, Ternate, Morotai, and New Guinea. It is also reported that in the 19" century the sows of domestic pigs in Sulawesi frequently mated with wild animals, after which they returned to their villages. in Suidae
Distribution. Sulawesi and adjacent Is (Buton, Kabaena, Muna, Peleng, Lembeh, and on some of the Togian Is); thought to be extinct on Selayar I. Pigs have been widely domesticated through the Indonesian archipelago and beyond. This primarily involved the Eurasian Wild Pig (S. scrofa), but also S. celebensis, the only other species of pig successfully domesticated. Mitochondrial DNA studies of the dispersion of these domesticated forms agree on three major dispersal events, two involving S. scrofa and one S. celebensis. Evidence supports an early human-mediated translocation of S. celebensis to Flores and Timor and two later, separate human-mediated dispersals of domestic pig through islands of SE Asia into Oceania. In addition to Flores and Timor, S. celebensis is also thought to occur in its domesticated form on Halmahera, Lendu, Roti, and Savur Is, and even on Simeulue and Nias Is to the W of Sumatra and far from its island of origin, Sulawesi. In the Moluccas, and possibly elsewhere in this region, introduced S. celebensis are thought to have hybridized with other introduced pigs of S. scrofa derivation, and apparent hybrids between these species are now reported to survive on a number of islands, including Salawatti, Great Kei, Dobu, Seram, Ambon, Bacan, Ternate, Morotai, and New Guinea. It is also reported that in the 19" century the sows of domestic pigs in Sulawesi frequently mated with wild animals, after which they returned to their villages.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.