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10,735 results for “dependability”

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dryad28/100

Data from: Effective size in density-dependent two-sex populations: the effect of mating systems

Density dependence in vital rates is a key feature affecting temporal fluctuations of natural populations. This has important implications for the rate of random genetic drift. Mating systems also greatly affect effective population sizes, but knowledge of how mating system and density regulation interact to affect random genetic drift is poor. Using theoretical models and simulations, we compare Ne in short-lived, density dependent animal populations with different mating systems. We study the impact of a fluctuating, density dependent sex ratio and consider both a stable and a fluctuating environment. We find a negative relationship between annual Ne/N and adult population size N due to density dependence, suggesting that loss of genetic variation is reduced at small densities. The magnitude of this decrease was affected by mating system and life history. A male-biased, density dependent sex ratio reduces the rate of genetic drift compared to an equal, density independent sex ratio, but a stochastic change towards male-bias reduces the Ne/N ratio. Environmental stochasticity amplifies temporal fluctuations in population size, and is thus vital to consider in estimation of effective population sizes over longer time periods. Our results on the reduced loss of genetic variation at small densities, particularly in polygamous populations, indicate that density regulation may facilitate adaptive evolution at small population sizes.

opencc-zeroDec 2016View details →
dryad28/100

Data from: Climate-dependent variation in cold tolerance of weedy rice and rice mediated by OsICE1 promoter methylation

<div class="WordSection1"> <p><span><span><span><span>The mechanisms by which weedy rice (<i>Oryza sativa</i> f. <i>spontanea</i>) has adapted to endure low-temperature stress in northern latitudes remain unresolved. In this study, we assessed cold tolerance of 100 rice varieties and 100 co-occurring weedy rice populations, which were sampled across a broad range of climates in China. A parallel pattern of latitude-dependent variation in cold tolerance was detected in cultivated rice and weedy rice. At the molecular level, differential cold tolerance was strongly correlated with relative expression levels of <i>CBF</i> cold response pathway genes and with methylation levels in the promoter region of <i>OsICE1</i>, a regulator of this pathway. Among all methylated cytosine sites of the <i>OsICE1</i> promoter, levels of CHG and CHH methylation were found to be significantly correlated with cold tolerance among accessions. Furthermore, within many of the collection locales, weedy rice shared identical or near-identical <i>OsICE1 </i>methylation patterns with co-occurring cultivated rice. These findings provide new insights on the possible roles that methylation variation in the <i>OsICE1</i> promoter may play in cold tolerance, and they suggest that weedy rice can rapidly acquire cold tolerance via methylation patterns that are shared with co-occurring rice cultivars. </span></span></span></span></p> </div> <p> </p>

opencc-zeroNov 2019View details →
dryad28/100

Data from: Context-dependent sex allocation: constraints on the expression and evolution of maternal effects

Despite decades of research, whether vertebrates can and do adaptively adjust the sex ratio of their offspring is still highly debated. However, this may have resulted from the failure of empirical tests to identify large and predictable fitness returns to females from strategic adjustment. Here we test the effect of diet quality and maternal condition on facultative sex ratio adjustment in the color polymorphic Gouldian finch (Erythrura gouldiae), a species that exhibits extreme maternal allocation in response to severe and predictable (genetically-determined) fitness costs. On high quality diets, females produced a relatively equal sex ratio, but over-produced sons in poor dietary conditions. Despite the lack of sexual size dimorphism, nutritionally-stressed foster sons were healthier, grew faster, and were more likely to survive than daughters. Although these findings are in line with predictions from sex allocation theory, the extent of adjustment is considerably lower than previously reported for this species. Females therefore have strong facultative control over sex allocation, but the extent of adjustment is likely determined by the relative magnitude of fitness gains and the ability to reliably predict sex-specific benefits from environmental (versus genetic) variables. These findings may help explain the often inconsistent, weak or inconclusive empirical evidence for adaptive sex ratio adjustment in vertebrates.

opencc-zeroDec 2010View details →
dryad28/100

Data from: Generalist insects behave in a jasmonate-dependent manner on their host plants, leaving induced areas quickly and staying longer on distant parts

Plants are sessile so have evolved sensitive ways to detect attacking herbivores, and sophisticated strategies to effectively defend themselves. Insect herbivory induces synthesis of the phytohormone jasmonic acid which activates downstream metabolic pathways for various chemical defences such as toxins and digestion inhibitors. Insects are also sophisticated animals, and many have co-evolved physiological adaptations that negate this induced plant defence. Insect behaviour has rarely been studied in the context of induced plant defence, although behavioural adaptation to induced plant chemistry may allow insects to bypass the host's defence system. By visualizing jasmonate-responsive gene expression within whole plants, we uncovered spatial and temporal limits to the systemic spread of plant chemical defence following herbivory. By carefully tracking insect movement, we found induced changes in plant chemistry were detected by generalist Helicoverpa armigera insects which then modified their behaviour in response, moving away from induced parts and staying longer on un-induced parts of the same plant. This study reveals there are plant-wide signals rapidly generated following herbivory that allow insects to detect the heterogeneity of plant chemical defences. Some insects use these signals to move around the plant, avoiding localised sites of induction and staying ahead of induced toxic metabolites.

opencc-zeroDec 2012View details →
dryad28/100

Data from: Can variation in standard metabolic rate explain context-dependent performance of farmed salmon offspring?

Escaped farmed Atlantic salmon interbreed with wild Atlantic salmon, leaving offspring that often have lower success in nature than pure wild salmon. On top of this, presence of farmed salmon descendants can impair production of wild type recruits. We hypothesize that both these effects connect with farmed salmon having acquired higher standard metabolic rates (SMR, the energetic cost of self-maintenance) during domestication. Furthermore, fitness related advantages of phenotypic traits associated with both high SMR and farmed salmon (e.g. social dominance) depend on environmental conditions, such as food availability. We hypothesize that farmed offspring have an advantage at high food availability due to e.g. dominance behavior but suffer increased risks of starvation when food is scarce because this behavior is energy-demanding. To test these hypotheses, we first compare embryo SMR of pure farmed, farmed-wild hybrids and pure wild offspring. Next, we test early life performance (in terms of survival and growth) of hybrids relative to that of their wild half-siblings, as well as their competitive abilities, in semi-natural conditions of high and low food availability. Finally, we test how SMR affects early life performance at high and low food availability. We find inconclusive support for the hypothesis that domestication has induced increased SMR. Further, wild and hybrid juveniles had similar survival and growth in the semi-natural streams. Yet, the presence of hybrids led to decreased survival of their wild half-siblings. Contrary to our hypothesis about context-dependency, these effects were not modified by food availability. However, wild juveniles with high SMR had decreased survival when food was scarce, but there was no such effect at high food availability. This study provides further proof that farmed salmon introgression may compromise the viability of wild salmon populations. We cannot, however, conclude that this is connected to alterations in the metabolic phenotype of farmed salmon.

opencc-zeroDec 2017View details →
dryad28/100

Data from: Immunocompetence in a long-lived ectothermic vertebrate is temperature dependent but shows no decline in older adults

1. Temperature affects nearly all aspects of the physiology of ectotherms, including their ability to mount an immune response. Typically, the ectothermic vertebrate immune system can respond over a wide range of temperatures, but there is a species-specific temperature at which responses are strongest, with impaired responses above and below this threshold. In long-lived ectotherms, aging could also influence the ability to respond to temperature changes as immunosenecence, the functional decrease in immune function with age, is widely reported. 2. This study examined the effects of the interaction between temperature and age on B cell function in a long-lived reptile, the red-eared slider turtle, Trachemys scripta. B cells in this species have previously been shown to have two main functions, phagocytosis and antibody production. 3. Adult turtles were trapped and blood samples taken. Because sliders grow throughout their lifetime, plastron length was used as a proxy for age. Leukocytes were isolated and used in either an ELISpot assay to examine their ability to produce antibodies spontaneously or when stimulated, or used in a phagocytic assay. The ELISpot and phagocytic assays were conducted over a range of biologically relevant temperatures. 4. We found no interaction between age and temperature on any measure of B cell function. In all cases there was a significant effect of temperature, with impaired function at temperatures below 29°C, but no impairment of function at higher temperatures. We also found little evidence of immunosenesce in any response. 5. This study provides insight into the thermal biology of B cell function in sliders and provides an interesting connection between immunology, behavior, and ecology in this long-lived turtle.

opencc-zeroDec 2016View details →
dryad28/100

Data from: Number sense and state-dependent valuation in cuttlefish

Identifying the amount of prey available is an important part of an animal's foraging behaviour. The risk-sensitive foraging theory predicts that an organism's foraging decisions with regard to food rewards depending upon its satiation level. However, the precise interaction between optimal risk-tolerance and satiation level remains unclear. In this study, we examined, firstly, whether cuttlefish, with one of the most highly evolved nervous system among the invertebrates, have number sense, and secondly, whether their valuation of food reward is satiation state dependent. When food such as live shrimps is present, without training, cuttlefish turn toward the prey and initiate seizure behaviour. Using this visual attack behaviour as a measure, cuttlefish showed a preference for a larger quantity when faced with two-alternative forced choice tasks (1 versus 2, 2 versus 3, 3 versus 4 and 4 versus 5). However, cuttlefish preferred the small quantity when the choice was between one live and two dead shrimps. More importantly, when the choice was between one large live shrimp and two small live shrimps (a prey size and quantity trade-off), the cuttlefish chose the large single shrimp when they felt hunger, but chose the two smaller prey when they were satiated. These results demonstrate that cuttlefish are capable of number discrimination and that their choice of prey number depends on the quality of the prey and on their appetite state. The findings also suggest that cuttlefish integrate both internal and external information when making a foraging decision and that the cost of obtaining food is inversely correlated with their satiation level, a phenomenon similar to the observation that metabolic state alters economic decision making under risk among humans.

opencc-zeroDec 2015View details →
dryad28/100

Data from: Quantifying age-dependent extinction from species phylogenies

Several ecological factors that could play into species extinction are expected to correlate with species age, i.e., time elapsed since the species arose by speciation. To date, however, statistical tools to incorporate species age into likelihood-based phylogenetic inference have been lacking. We present here a computational framework to quantify age-dependent extinction through maximum likelihood parameter estimation based on phylogenetic trees, assuming species lifetimes are gamma distributed. Testing on simulated trees shows that neglecting age dependence can lead to biased estimates of key macroevolutionary parameters. We then apply this method to two real data sets, namely a complete phylogeny of birds (class Aves) and a clade of self-compatible and -incompatible nightshades (Solanaceae), gaining initial insights into the extent to which age-dependent extinction may help explain macroevolutionary patterns. Our methods have been added to the R package TreePar.

opencc-zeroDec 2014View details →
dryad28/100

Data from: Life-history evolution and density-dependent growth in experimental populations of yeast

We studied the evolution of the correlation between growth rate r and yield K in experimental lineages of the yeast Saccharomyces cerevisiae. First, we isolated a single clone every ~250 generations from each of eight populations selected in a glucose-limited medium for 5000 generations at ~6.6 population doublings per day (20 clones per line × 8 lines) and measured its growth rate and yield in a new, galactose-limited medium (with ~1.3 doubling per day). For most lines, r on galactose increased throughout the 5000 generations of selection on glucose while K on galactose declined. Next, we selected these 160 glucose-adapted clones in the galactose environment for ~120 generations and measured changes in r and K in galactose. In general, growth rate increased and yield declined, and clones that initially grew slowly on galactose improved more than did faster clones. We found a negative correlation between r and K among clones both within each line and across all clones. We provide evidence that this relationship is not heritable and is a negative environmental correlation rather than a genetic trade-off.

opencc-zeroDec 2011View details →
dryad28/100

Data from: Temperature dependence of predation stress and the nutritional ecology of a generalist herbivore

Prey at risk of predation may experience stress and respond physiologically by altering their metabolic rates. Theory predicts that such physiological changes should alter prey nutrient demands from N-rich to C-rich macronutrients and shift the balance between maintenance and growth/reproduction. Theory further suggests that for ectotherms, temperature stands to exacerbate this stress. Yet, the interactive effects of predation stress and temperature stress on diet, metabolism, and survival of ectotherms are not well known. This knowledge gap was addressed with a laboratory study in which wild juvenile grasshoppers were collected, assigned to one of three groups, and raised at three different temperatures. All grasshoppers had access to equal quantities of two diets composed of opposite carbohydrate:protein ratios. Half of the individuals in each temperature group were exposed to predation risk cues from spider predators, while the other half were kept in risk free conditions. Grasshoppers consumed more carbohydrates when exposed to predation risk, but consumption favored greater protein intake as temperature increased. Moreover, the difference in carbohydrate intake between risk cue and risk free treatments diminished as temperature increased. Furthermore, variability between individual consumption patterns both within and between treatments decreased markedly as temperature increased, suggesting that higher temperatures promote more consistent individual consumption behaviors. Grasshoppers grew faster and larger as temperature increased, which translated into higher survival rates at higher temperatures. Warmer grasshoppers also did not alter their metabolic rates in response to predation risk cues, in contrast to colder grasshoppers. Digestive efficiency increased with temperature as well, further indicating that lower temperatures were much more stressful than higher temperatures for grasshoppers. The study shows that physiological responses of ectothermic herbivores to predation stress are highly plastic and temperature dependent, with higher temperatures promoting increased protein intake, growth, development, survival, and digestive efficiency relative to colder temperatures. These findings help to reconcile why dietary responses (proportion of protein vs. carbohydrate intake) to predation stress may vary among different prey taxa studied previously.

opencc-zeroDec 2015View details →
dryad28/100

Data from: Environmental and scale-dependent evolutionary trends in the body size of crustaceans

The ecological and physiological significance of body size is well recognized. However, key macroevolutionary questions regarding the dependency of body size trends on the taxonomic scale of analysis and the role of environment in controlling long-term evolution of body size are largely unknown. Here, we evaluate these issues for decapod crustaceans, a group that diversified in the Mesozoic. A compilation of body size data for 792 brachyuran crab and lobster species reveals that their maximum, mean and median body size increased, but no increase in minimum size was observed. This increase is not expressed within lineages, but is rather a product of the appearance and/or diversification of new clades of larger, primarily burrowing to shelter-seeking decapods. This argues against directional selective pressures within lineages. Rather, the trend is a macroevolutionary consequence of species sorting: preferential origination of new decapod clades with intrinsically larger body sizes. Furthermore, body size evolution appears to have been habitat-controlled. In the Cretaceous, reef-associated crabs became markedly smaller than those in other habitats, a pattern that persists today. The long-term increase in body size of crabs and lobsters, coupled with their increased diversity and abundance, suggests that their ecological impact may have increased over evolutionary time.

opencc-zeroDec 2014View details →
dryad28/100

Data from: Temperature-dependent, behavioral, and transcriptional variability of a tritrophic interaction consisting of bean, herbivorous mite, and predator

Different organisms compensate for, and adapt to, environmental changes in different ways and therefore environmental changes affect animal–plant interactions. We consequently assessed the effect of temperature on a tritrophic system of the lima bean, the spider mite Tetranychus urticae, and the predatory mite Phytoseiulus persimilis. In this system the plant defends itself against T. urticae by emitting volatiles that attract P. persimilis. Over a range of 20 40°C the emission of volatiles by infested plants and the attraction of P. persimilis, peaked at 30°C but the number of eggs laid by T. urticae adults and the number of eggs consumed by P. persimilis, peaked at 35°C. This indicates that the spider mites and predatory mites performed best at a higher temperature than that at which most volatile attractants were produced. We used data from transcriptome pyrosequencing of the mites and found that P. persimilis up-regulated gene families for heat shock proteins (HSPs) and ubiquitin-associated proteins, whereas T. urticae did not. RNA interference-mediated gene suppression in P. persimilis, developed in the current study, revealed that predation on T. urticae eggs by P. persimilis fed with PpHsp70-1 dsRNA was reduced at 35°C, when the expression level of PpHsp70-1 was greatly increased but not at 25°C. Overall, our molecular and behavioral approaches revealed that the mode and tolerance of lima bean, T. urticae, and the predatory mite P. persimilis are distinctly affected by temperature variability, thereby making their tritrophic interactions temperature dependent.

opencc-zeroDec 2011View details →
dryad28/100

Data from: The Black Queen Hypothesis: evolution of dependencies through adaptive gene loss

Reductive genomic evolution is common in endosymbiotic bacteria, where it is driven by genetic drift. Genome reduction is less common in free-living organisms, but it has occurred in the numerically dominant open-ocean bacterioplankton Prochlorococcus and Pelagibacter, and in these cases the reduction appears to be driven by natural selection rather than drift. The loss of certain genes in free-living organisms may leave them dependent on co-occurring microbes for the lost metabolic functions. We present the Black Queen Hypothesis (BQH), a novel theory of reductive evolution that explains how selection leads to such dependencies; its name refers to the queen of spades in the game Hearts, where the usual strategy is to avoid taking this card. Gene loss can provide a selective advantage by conserving an organism's limiting resources, provided that the gene's function is dispensable. Many vital genetic functions are leaky, thereby unavoidably producing public goods that are available to the entire community. Such leaky functions are thus dispensable for individuals, provided they are not lost entirely from the community. The BQH predicts that the loss of a costly, leaky function is selectively favored at the individual level and will proceed until the production of public goods is just sufficient to support the equilibrium community; at that point, the benefit of any further loss would be offset by the cost. Evolution in accordance with the BQH thus generates "beneficiaries" of reduced genomic content that are dependent on leaky "helpers," and it may explain the observed non-universality of prototrophy, stress resistance, and other cellular functions in the microbial world.

opencc-zeroDec 2011View details →
dryad28/100

Data from: Sex-specific density-dependent secretion of glucocorticoids in lizards: insights from laboratory and field experiments

Negative density feedbacks have been extensively described in animal species and involve both consumptive (i.e. trophic interactions) and non-consumptive (i.e. social interactions) mechanisms. Glucocorticoids are a major component of the physiological stress response and homeostasis, and therefore make a good candidate for proximate determinants of negative density feedbacks. Here, we combined laboratory and field experiments with enclosed populations to investigate the relationship between density, social stress and plasma corticosterone levels in the common lizard Zootoca vivipara. This species exhibits strong negative density feedbacks that affect females more than males, and its life history is sensitive to experimentally-induced chronic elevation of corticosterone plasma levels. We found that prolonged crowding in the laboratory can trigger a chronic secretion of corticosterone independent from food restriction. In the field experiments, corticosterone levels of females were not affected by population density. Corticosterone levels of males increased with population density but only during the late activity season in a first field experiment where we manipulated density. They also increased with density during the mating season but only in populations with a female-biased sex ratio in a second field experiment where we crossed manipulated density and adult sex ratio. Altogether, our results provide limited evidence for a role of basal corticosterone secretion in density feedbacks in this species. Context and density-dependent effects in males may arise from changes in behavior caused by competition for resources, male–male competition, and mating.

opencc-zeroDec 2016View details →
dryad28/100

Data from: A framework for elucidating the temperature dependence of fitness

Climate warming is predicted to cause large-scale extinctions of ectothermic species. A striking difference between tropical and temperate ectotherms is that tropical species exhibit an upper temperature limit for survival (T_max) that is closer to the temperature at which fitness is maximized (T_opt). Thus, even a small increase in environmental temperature could put tropical ectotherms at high risk of extinction, whereas temperate ectotherms have a wider temperature cushion. Although this pattern is widely observed, the mechanisms that produce it are not well-understood. We develop a mathematical framework to partition the temperature response of fitness into its components (fecundity, mortality and development) and test model predictions with data for insects. We find that fitness declines at high temperatures because the temperature responses of fecundity and mortality act in opposite ways: fecundity decreases with temperature once temperatures exceed the optimal range, whereas mortality continues to increase. The proximity of T_opt to T_max depends on how the temperature response of development mediates the interaction between fecundity and mortality. When development is highly temperature-sensitive, mortality exceeds reproduction only after fecundity has started to decline with temperature, which causes fitness to decline rapidly to zero once temperatures exceed T_opt. The model correctly predicts empirically observed fitness-temperature relationships in insects from different latitudes. It potentially explains the widely-reported phenological shifts and latitudinal differences in fitness responses.

opencc-zeroDec 2010View details →
dryad28/100

Data from: Sylleptic branching in winter-headed apple (Malus × domestica) trees: accession-dependent responses and their relationships with other tree architectural characteristics

Well-feathered apple trees are essential for commercial orchards to optimize yields. However, most cultivars do not form these sylleptic branches readily in commercial nurseries due to high apical dominance. Several treatments exist to promote their formation in the nurseries, one of which is heading. However, not all cultivars are expected to react similarly to these treatments. We studied the branching response of 155 genotypes following heading and its relation to other architectural traits as a function of the cultivar's genetic background. Trees were grown for two consecutive years after grafting in a nursery, and the main axes were headed in the winter following growth in year 1. After heading, a single shoot was retained when growth resumed in the second year. Plant architectural traits such as growth of the main shoot, internode length, sylleptic branching, etc. were measured before and after heading and were statistically compared using a mixed model. This model showed the effect of heading for all architectural traits studied. In addition significant genotype and genotype × treatment interactions were found. In general, genotypes that showed a more vigorous growth during the first year also reacted more vigorously to heading. Accounting for the genetic substructure of this collection, no clear distinction in tree response could be found except in a small group of individuals that belonged to an F1 mapping population. This study shows that heading is not favorable for all genotypes to promote sufficient sylleptic branching and that other methods are needed to promote branching in these accessions.

opencc-zeroDec 2015View details →
dryad28/100

Data from: Size-dependent ejaculation strategies and reproductive success in the yellow dung fly, Scathophaga stercoraria

Theory predicts that sperm competition will favour the production of larger ejaculates. However, because the benefits of greater reproductive investment are balanced by the costs of spermatogenesis, expenditure should depend on male physiology, mating rate and the relationship between additional investment and fertilization gains. In the yellow dung fly, Scathophagastercoraria, males adopt size-dependent alternative mating tactics that are associated with discrete ecological resources (foraging and oviposition substrates), although males switch between these environments throughout their lives. By copulating on foraging substrate (fruit or flowers), males can bypass intense mate competition that occurs at oviposition sites (cow dung), but as a consequence, must occupy a disfavoured mating role (i.e. face a greater risk that their ejaculate will be displaced from storage prior to fertilization). Small males often mate on foraging substrate, whereas large males mate in this environment only during feeding bouts. Optimal ejaculate expenditure should therefore depend on male size and their current mating role. By measuring copula duration (i.e. ejaculate expenditure) of natural matings and assigning paternity to resulting offspring, we confirmed that copulations on dung sire approximately three times as many offspring as those on foraging substrate. Furthermore, large males reduced copula duration on fruit, as predicted, since this strategy enables greater investment into high-payoff matings on dung. Conversely, small males copulated for shorter durations on dung than on foraging substrate, perhaps to minimize the risk of being displaced from copula by a rival. These patterns of ejaculate expenditure translated into greater offspring production for large males on dung and for small males on fruit. We discuss the possible proximate factors driving these size- and context-dependent patterns of ejaculate allocation by yellow dung fly males. Together, our findings shed light on the allocation strategies and reproductive consequences of alternative mating tactics.

opencc-zeroDec 2016View details →
dryad28/100

Data from: Population size-structure dependent fitness and ecosystem consequences in Trinidadian guppies

1. Decades of theory and recent empirical results have shown that evolutionary, population, community and ecosystem properties are the result of feedbacks between ecological and evolutionary processes. The vast majority of theory and empirical research on these eco-evolutionary feedbacks has focused on interactions among population size and mean traits of populations. 2. However, numbers and mean traits represent only a fraction of the possible feedback dimensions. Populations of many organisms consist of different size classes that differ in their impact on the environment and each other. Moreover, rarely do we know the map of ecological pathways through which changes in numbers or size structure cause evolutionary change. The goal of this study was to test the role of size structure in eco-evolutionary feedbacks of Trinidadian guppies and to begin to build an eco-evolutionary map along this unexplored dimension. 3. We used a factorial experiment in mesocosms wherein we crossed high- and low-predation guppy phenotypes with population size structure. We tested the ability of changes in size structure to generate selection on the demographic rates of guppies using an integral projection model (IPM). To understand how fitness differences among high- and low-predation phenotypes may be generated, we measured the response of the biomass of lower trophic levels and nutrient cycling to the different phenotype and size structure treatments. 4. We found a significant interaction between guppy phenotype and the size structure treatments for absolute fitness. Size structure had a very large effect on invertebrate biomass in the mesocosms, but there was little or no effect of the phenotype. The effect of size structure on algal biomass depended on guppy phenotype, with no difference in algal biomass in populations with more, smaller guppies, but a large decrease in algal biomass in mesocosms with phenotypes adapted to low-predation risk. 5. These results indicate an important role for size structure partially driving eco-evolutionary feedbacks in guppies. The changes in the ecosystem suggest that the absence of a steep decline in guppy fitness of the low-predation risk populations is likely due to higher consumption of algae when invertebrates are comparatively rare. Overall, these results demonstrate size structure as a possible dimension through which eco-evolutionary feedbacks may occur in natural populations.

opencc-zeroDec 2014View details →
dryad28/100

Data from: Modeling and quantifying frequency-dependent fitness in microbial populations with cross-feeding interactions

Coexistence of two or more populations by frequency-dependent selection is common in nature, and it often arises even in well-mixed experiments with microbes. If ecology is to be incorporated into models of population genetics, then it is important to represent accurately the functional form of frequency-dependent interactions. However, measuring this functional form is problematic for traditional fitness assays, which assume a constant fitness difference between competitors over the course of an assay. Here, we present a theoretical framework for measuring the functional form of frequency-dependent fitness by accounting for changes in abundance and relative fitness during a competition assay. Using two examples of ecological coexistence that arose in a long-term evolution experiment with Escherichia coli, we illustrate accurate quantification of the functional form of frequency-dependent relative fitness. Using a Monod-type model of growth dynamics, we show that two ecotypes in a typical cross-feeding interaction—such as when one bacterial population uses a byproduct generated by another—yields relative fitness that is linear with relative frequency.

opencc-zeroDec 2014View details →
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Data from: Density-dependent energy use contributes to the self-thinning relationship of cohorts

In resource-limited populations, an increase in average body size can occur only with a decline in abundance. This is known as self-thinning, and the decline in abundance in food-limited populations is considered proportional to the scaling of metabolism with body mass. This popular hypothesis may be inaccurate, because self-thinning populations can also experience density-dependent competition, which could alter their energy use beyond the predictions of metabolic scaling. This study tested whether density-dependent competition has an energetic role in self-thinning, by manipulating the abundance of the fish Macquaria novemaculeata and tank size to partition the effects of competition from metabolic scaling. We found that self-thinning can be density dependent and that changes in intraspecific competition may be more influential than metabolic scaling on self-thinning relationships. The energetic mechanism we propose is that density-dependent competition causes variation in the allocation of energy to growth, which alters the energetic efficiency of self-thinning cohorts. The implication is that food-limited cohorts and populations with competitive strategies that encourage fast-growing individuals will have less body mass at equilibrium and higher mortality rates. This finding sheds light on the processes structuring populations and can be used to explain inconsistencies in the mass-abundance scaling of assemblages and communities (the energetic-equivalence rule).

opencc-zeroDec 2011View details →

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record

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