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3,109
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ShareScore release 0.9.0
Dataset results
3,109 results for “sequence analysis”
Enabling Whole Genome Sequencing Analysis from FFPE Specimens in Clinical Oncology
This study includes whole genome sequencing from 44 pediatric patients at Memorial Sloan Kettering derived from formalin-fixed paraffin-embedded (FFPE) tissue. This dataset was used to train and validate a classification strategy called FFPErase for detecting artifact mutations from FFPE damage.
Next Generation Sequencing for Transcriptomes Analysis in GLP-1 Notch receptor ON and OFF genetic background
GEO Series GSE144229. Caenorhabditis elegans. 10 samples. Type: Expression profiling by high throughput sequencing.
RNA sequencing analysis of SczA-deficient Streptococcus agalactiae during Zn intoxication
GEO Series GSE167902. Streptococcus agalactiae. 4 samples. Type: Expression profiling by high throughput sequencing.
Next Generation Sequencing Facilitates Quantitative Analysis of Control and H3.3 Knockdown neural stem cell Transcriptomes
GEO Series GSE92720. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Next Generation Sequencing Analysis of Wild Type and SRSF2-MKO Skeletal Muscle Transcriptomes
GEO Series GSE151946. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Small RNA Sequencing facilitates quantitative analysis of miRNA expression in feces from mice during DSS-induced colitis and the recovery phase
GEO Series GSE165648. Mus musculus. 11 samples. Type: Non-coding RNA profiling by high throughput sequencing.
RNA sequencing analysis of SczA-deficient Streptococcus agalactiae
GEO Series GSE167901. Streptococcus agalactiae. 4 samples. Type: Expression profiling by high throughput sequencing.
Phylogenetic trees of genus Oncidium Sw. based on analysis of DNA sequences
<p>Genus <em>Oncidium Sw</em>. is widely regarded as a polyphiletic, and the taxonomic boundaries between him and such genera as <em>Odontoglossum</em> Kunth. or <em>Miltonia</em> Lindley remain blurred. The aim of the study was to determine the phylogenetic relationships within the genus <em>Oncidium</em> <em>s.lato</em> based on the DNA sequences analysis. The correlation between molecular data and geographical distribution of the studied species was also examined. Two markers were used for the analysis: the ITS sequence derived from the nuclear genome and the matK gene that is part of mitochondrial DNA. Sequences were obtained by DNA isolation from frozen leaves, polymerase chain reaction (PCR) and sequencing. For their analysis in the PAUP* program, a feature-based parsimony (MP) method was used, and for assessing the reliability of the resulting trees, the non-parametric bootstrap method. The ITS MP search resulted in 10 000 trees (CI=0.49; RI=0.631). The aligned matrix resulted in 814 characters of which 433 were parsimony informative. The matK MP search resulted in 10 000 trees (CI=0.505; RI=0.714). The aligned matrix resulted in 1359 characters of which 358 were parsimony informative. </p> <p>This dataset contains two image files with phylogenetic trees - the first one based on ITS analysis of 190 species and the second one based on the matK analysis of 154 species. The upper numbers above branches are the Fitch values and lower numbers are the bootstrap values. The information about geographical distribution is added. The dataset includes also two NEXUS files (for ITS and for matK) with DNA sequences. </p>
16S rRNA Gene Sequencing Analysis of the Gut Microbiota of ten Mulberry Silkworms Fed with Mulberry Leaves (SY), ten Artificial Diet (SL), and tem Reverted from Artificial Diet to Mulberry Leaves (ZS)
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Mitochondria- and polyribosome-interacting lncRNA sequencing analysis in human embryonic stem cells, iPSCs and fibroblasts
GEO Series GSE216689. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
Next Generation Sequencing Quantitative Analysis of the transcriptomes of Wild Type and Mki67-/- MDA-mb231 (human breast adenocarcinoma) cell line
GEO Series GSE162879. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
PABPC1 RIP-Seq and RNA-Sequence Analysis of Si-LINC00882 in 231 Cells
GEO Series GSE231786. Homo sapiens. 4 samples. Type: Other.
Next Generation Sequencing Analysis on Grafts with Macrosteatosis for Liver Transplantation in rats
GEO Series GSE193764. Rattus norvegicus. 32 samples. Type: Expression profiling by high throughput sequencing.
RNA sequencing analysis of hepatic transcriptome profiles in experimental nonalcoholic steatohepatitis
GEO Series GSE135050. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
RNA Sequencing Analysis of MC38 tumors with Glutamate decarboxylase 1 Knockdown
GEO Series GSE165889. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.
RNA-sequencing (RNA-seq) analysis of liver tissues from WT and AKR1D1KO mice in Hepa1-6-induced HCC model.
GEO Series GSE279123. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Next Generation Sequencing Facilitates Quantitative Analysis of Dura macrophage Transcriptomes post adoptive T cell reconstitution of RAG-1 deficient mice
GEO Series GSE120486. Mus musculus. 51 samples. Type: Expression profiling by high throughput sequencing.
Comparative MicroRNA Sequencing Analysis in Late L1 Larvae of C. elegans: Wild Type N2 Versus myrf-1(ju1121) Mutants
GEO Series GSE262766. Caenorhabditis elegans. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
MicroRNA profile analysis of feline kidney cell line infected with Feline Panleukopenia Virus using deep sequencing
GEO Series GSE122381. Felis catus. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Next Generation Sequencing Facilitates Quantitative Analysis of ISL1 Regulated Transcriptomes
GEO Series GSE77958. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.