Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
4,144
datasets available to search
ShareScore release 0.9.0
Dataset results
4,144 results for “ITS barcode”
Supplementary material 1 from: Mulcahy DG, Lee JL, Miller AH, Chand M, Thura MK, Zug GR (2018) Filling the BINs of life: Report of an amphibian and reptile survey of the Tanintharyi (Tenasserim) Region of Myanmar, with DNA barcode data. ZooKeys 757: 85-152. https://doi.org/10.3897/zookeys.757.24453
12S and 16S neighbor-joining trees :
Figure 1 from: Mulcahy DG, Lee JL, Miller AH, Chand M, Thura MK, Zug GR (2018) Filling the BINs of life: Report of an amphibian and reptile survey of the Tanintharyi (Tenasserim) Region of Myanmar, with DNA barcode data. ZooKeys 757: 85-152. https://doi.org/10.3897/zookeys.757.24453
Figure 1 Map of Tanintharyi Region, Myanmar. The Tanintharyi Nature Reserve, north of Dawei, and the Lampi National Park, island northwest of Kawthoung, are officially designated as national parks in Myanmar. The other areas in Myanmar are proposed as national parks (Protected Areas) or being considered for future protection (Reserve Forests). The main survey reported here was conducted in the Yeybu area of the proposed Tanintharyi National Park (triangles: Forest 1–2 and Gardens sites). A shorter survey, with fewer people, was conducted in the Reserve Forest near the Chaung-nauk-pyan area (diamonds: Forest 3 and slash & burnt sites) and is also included in this report. Map provided by Grant M. Connette of the Smithsonian Conservation Biology Institute (SCBI).
Figure 4 from: Mulcahy DG, Lee JL, Miller AH, Chand M, Thura MK, Zug GR (2018) Filling the BINs of life: Report of an amphibian and reptile survey of the Tanintharyi (Tenasserim) Region of Myanmar, with DNA barcode data. ZooKeys 757: 85-152. https://doi.org/10.3897/zookeys.757.24453
Figure 4 Selected turtles and lizards found during this study's expedition. A Indotestudo elongata (USNM HerpImage 2896) B Dogania subplana (USNM HerpImage 2897) C Acanthosaura crucigera (USNM 587019) D Eutropis multifasciata (USNM 587035) E Takydromus sexlineatus (USNM 587034) F Calotes emma (USNM 587022). Photos A & C by Daniel G. Mulcahy, all others by Myint Kyaw Thura.
Figure 5 from: Mulcahy DG, Lee JL, Miller AH, Chand M, Thura MK, Zug GR (2018) Filling the BINs of life: Report of an amphibian and reptile survey of the Tanintharyi (Tenasserim) Region of Myanmar, with DNA barcode data. ZooKeys 757: 85-152. https://doi.org/10.3897/zookeys.757.24453
Figure 5 Selected snakes found during this study's expedition. A Malayopython reticulatus (USNM HerpImage 2892) B Ahaetulla mycterizans (USNM 587040) C Dendrelaphis pictus (USNM HerpImage 2893) D Boiga dendrophila (USNM 587041) E Xenochrophis trianguligerus (USNM 587045) F Rhabdophis chrysargos (USNM 587044) G Rhabdophis nigrocinctus (USNM HerpImage 2894) H Naja kaouthia (USNM HerpImage 2895). Photos A–B, D–F by Daniel G. Mulcahy, C, H–I by Myint Kyaw Thura.
Figure 3 from: Mulcahy DG, Lee JL, Miller AH, Chand M, Thura MK, Zug GR (2018) Filling the BINs of life: Report of an amphibian and reptile survey of the Tanintharyi (Tenasserim) Region of Myanmar, with DNA barcode data. ZooKeys 757: 85-152. https://doi.org/10.3897/zookeys.757.24453
Figure 3 Selected amphibians found during this study's expedition. A Phrynoidis aspera (USNM 586871) B Limnonectes doriae (USNM 586911) C Microhyla fissipes (USNM 586949) D Odorrana hosii (USNM 586980) E Chalcorana eschatia (USNM 586971) F Fejervarya sp. (USNM 586881) G Occidozyga martensii (USNM 586930) H Sylvirana malayana (USNM 586970). Photos by Myint Kyaw Thura and Daniel G. Mulcahy.
Figure 5 from: Raupach MJ, Hannig K, Morinière J, Hendrich L (2018) A DNA barcode library for ground beetles of Germany: the genus Amara Bonelli, 1810 (Insecta, Coleoptera, Carabidae). ZooKeys 759: 57-80. https://doi.org/10.3897/zookeys.759.24129
Figure 5 - Maximum statistical parsimony network of Amara alpina (Paykull, 1790) and Amara torrida Panzer, 1796. Used parameters included default settings for connection steps whereas gaps were treated as fifth state. Each line represents a single mutational change whereas small black lines indicate missing haplotypes. The numbers of analysed specimens (n) are listed, the diameter of the circles is proportional to the number of haplotypes sampled (see given open half circles with numbers). Scale bars 1 mm. Beetle images were obtained from www.eurocarabidae.de.
Figure 3 from: Raupach MJ, Hannig K, Morinière J, Hendrich L (2018) A DNA barcode library for ground beetles of Germany: the genus Amara Bonelli, 1810 (Insecta, Coleoptera, Carabidae). ZooKeys 759: 57-80. https://doi.org/10.3897/zookeys.759.24129
Figure 3 - Maximum statistical parsimony networks of two species pairs: A Amara ovata (Fabricius, 1792) and Amara similata (Gyllenhal, 1810), and B Amara familiaris (Duftschmid, 1812) and Amara lucida (Duftschmid, 1812). Used parameters included default settings for connection steps whereas gaps were treated as fifth state. Each line represents a single mutational change whereas small black lines indicate missing haplotypes. The numbers of analysed specimens (n) are listed, the diameter of the circles is proportional to the number of haplotypes sampled (see given open half circles with numbers). Scale bars 1 mm. Beetle images were obtained from www.eurocarabidae.de.
Figure 4 from: Raupach MJ, Hannig K, Morinière J, Hendrich L (2018) A DNA barcode library for ground beetles of Germany: the genus Amara Bonelli, 1810 (Insecta, Coleoptera, Carabidae). ZooKeys 759: 57-80. https://doi.org/10.3897/zookeys.759.24129
Figure 4 - Maximum statistical parsimony network of the Amara communis complex. Used parameters included default settings for connection steps whereas gaps were treated as fifth state. Each line represents a single mutational change whereas small black lines indicate missing haplotypes. The numbers of analysed specimens (n) are listed, the diameter of the circles is proportional to the number of haplotypes sampled (see given open half circles with numbers). Scale bars 1 mm. Beetle images were obtained from www.eurocarabidae.de.
Figure 1 from: Raupach MJ, Hannig K, Morinière J, Hendrich L (2018) A DNA barcode library for ground beetles of Germany: the genus Amara Bonelli, 1810 (Insecta, Coleoptera, Carabidae). ZooKeys 759: 57-80. https://doi.org/10.3897/zookeys.759.24129
Figure 1 - An image collection of some representative species of the analysed ground beetles. A Amara (Amara) similata (Gyllenhal, 1810) B Amara (Amarocelia) erratica (Duftschmid, 1812) C Amara (Bradytus) fulva (Müller, 1776) D Amara (Curtonotus) convexiuscula (Marsham, 1802) E Amara (Leirides) spectabilis Schau, 1858 F Amara (Paracelia) quenseli (Schönherr, 1806) G Amara (Xenocelia) cursitans Zimmermann, 1931 H Amara (Zezea) kulti Fassati, 1947, and I Zabrus tenebrioides Goeze, 1777. Scale bars 1 mm. All images were obtained from www.eurocarabidae.de.
Supplementary material 2 from: Fišer C, Alther R, Zakšek V, Borko Š, Fuchs A, Altermatt F (2018) Translating Niphargus barcodes from Switzerland into taxonomy with a description of two new species (Amphipoda, Niphargidae). ZooKeys 760: 113-141. https://doi.org/10.3897/zookeys.760.24978
Table S2. List of samples used in a detailed network analyses along with GenBank Accessions :
Figure 8 from: Fišer C, Alther R, Zakšek V, Borko Š, Fuchs A, Altermatt F (2018) Translating Niphargus barcodes from Switzerland into taxonomy with a description of two new species (Amphipoda, Niphargidae). ZooKeys 760: 113-141. https://doi.org/10.3897/zookeys.760.24978
Figure 8 Uropod I (left) and III (middle), and Telson (right) of N. tonywhitteni sp. n. (top, holotype, male 9.1 mm) and N. luchoffmanni sp. n. (bottom, holotype, male 6.7 mm). Drawings are not scaled to the same size.
Figure 7 from: Fišer C, Alther R, Zakšek V, Borko Š, Fuchs A, Altermatt F (2018) Translating Niphargus barcodes from Switzerland into taxonomy with a description of two new species (Amphipoda, Niphargidae). ZooKeys 760: 113-141. https://doi.org/10.3897/zookeys.760.24978
Figure 7 Pereopods III-VII (from left to right) of N. tonywhitteni sp. n. (top, holotype, male 9.1 mm) and N. luchoffmanni sp. n. (bottom, holotype, male 6.7 mm). Pereopods VII on this side were broken; see Fig. 3 for illustration of the entire pereopod. Gills were only drawn when intact; however, they are present on pereopods III-VI. Drawings are not scaled to the same size.
Figure 5 from: Fišer C, Alther R, Zakšek V, Borko Š, Fuchs A, Altermatt F (2018) Translating Niphargus barcodes from Switzerland into taxonomy with a description of two new species (Amphipoda, Niphargidae). ZooKeys 760: 113-141. https://doi.org/10.3897/zookeys.760.24978
Figure 5 Mouth parts (mandible & mandibular palp, maxilla I, maxilla II, maxilliped; from left to right) of N. tonywhitteni sp. n. (top, holotype, male 9.1 mm) and N. luchoffmanni sp. n. (bottom, holotype, male 6.7 mm). Drawings are not scaled to the same size.
Figure 4 from: Fišer C, Alther R, Zakšek V, Borko Š, Fuchs A, Altermatt F (2018) Translating Niphargus barcodes from Switzerland into taxonomy with a description of two new species (Amphipoda, Niphargidae). ZooKeys 760: 113-141. https://doi.org/10.3897/zookeys.760.24978
Figure 4 Antenna I (left) and II (right) of N. tonywhitteni sp. n. (top, holotype, male 9.1 mm) and N. luchoffmanni sp. n. (bottom, holotype, male 6.7 mm). Drawings are not scaled to the same size.
Figure 3 from: Fišer C, Alther R, Zakšek V, Borko Š, Fuchs A, Altermatt F (2018) Translating Niphargus barcodes from Switzerland into taxonomy with a description of two new species (Amphipoda, Niphargidae). ZooKeys 760: 113-141. https://doi.org/10.3897/zookeys.760.24978
Figure 3 Two new Niphargus species from Switzerland. The drawings are scaled to the same size. Top: N. luchoffmanni sp. n. (holotype, male 6.7 mm), bottom: N. tonywhitteni sp. n. (holotype, male 9.1 mm). Both specimens were rearranged digitally after drawing. Missing parts were taken from the right hand side of the specimen and are depicted in grey.
Figure 2 from: Fišer C, Alther R, Zakšek V, Borko Š, Fuchs A, Altermatt F (2018) Translating Niphargus barcodes from Switzerland into taxonomy with a description of two new species (Amphipoda, Niphargidae). ZooKeys 760: 113-141. https://doi.org/10.3897/zookeys.760.24978
Figure 2 Phylogenetic relationships of Niphargus species focusing on new taxa from Switzerland. Highlighted are two new species and a sister species (green: N. luchoffmanni sp. n., blue: N. thienemanni, purple: N. tonywhitteni sp. n.) The tree was constructed using Bayesian inference on COI, 28S rRNA and histone gene sequences. The tree was rooted using Microniphargus leruthi (not presented). On the right side, two haplotype networks (based on COI and ITS) calculated within N. thienemanni and N. tonywhitteni sp. n. species pairs are shown. These networks are based on a higher number of samples (N=10, see Suppl. material 2) compared to the phylogenetic tree. Colours in the networks correspond to colours in the tree.
Figure 1 from: Fišer C, Alther R, Zakšek V, Borko Š, Fuchs A, Altermatt F (2018) Translating Niphargus barcodes from Switzerland into taxonomy with a description of two new species (Amphipoda, Niphargidae). ZooKeys 760: 113-141. https://doi.org/10.3897/zookeys.760.24978
Figure 1 Finding sites of the new species N. tonywhitteni sp. n. (purple) and N. luchoffmanni sp. n. (green), and the distribution of N. aquilex (yellow) in Southern Germany and Northern Switzerland. Data source: Esri, 2013: Data & Maps for ArcGIS for use with Esri software; Elevation map of Europe EEA, Copenhagen, 2004.
Supplementary material 1 from: Fišer C, Alther R, Zakšek V, Borko Š, Fuchs A, Altermatt F (2018) Translating Niphargus barcodes from Switzerland into taxonomy with a description of two new species (Amphipoda, Niphargidae). ZooKeys 760: 113-141. https://doi.org/10.3897/zookeys.760.24978
Table S1. List of samples used in phylogenetic analyses along with GenBank Accessions :
Supplementary material 4 from: Fišer C, Alther R, Zakšek V, Borko Š, Fuchs A, Altermatt F (2018) Translating Niphargus barcodes from Switzerland into taxonomy with a description of two new species (Amphipoda, Niphargidae). ZooKeys 760: 113-141. https://doi.org/10.3897/zookeys.760.24978
Morphological database in DELTA :
Figure 6 from: Fišer C, Alther R, Zakšek V, Borko Š, Fuchs A, Altermatt F (2018) Translating Niphargus barcodes from Switzerland into taxonomy with a description of two new species (Amphipoda, Niphargidae). ZooKeys 760: 113-141. https://doi.org/10.3897/zookeys.760.24978
Figure 6 Gnathopod I (left) and II (right) of N. tonywhitteni sp. n. (top, holotype, male 9.1 mm) and N. luchoffmanni sp. n. (bottom, holotype, male 6.7 mm). Gills are dashed, and drawn only when intact (missing in N. luchoffmanni sp. n.). Drawings are not scaled to the same size.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.