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4,753 results for “SHAPE”
Seasonal mixed layer depth shapes phytoplankton physiology, viral production, and accumulation in the North Atlantic
<p>QC'd data for the publication "Seasonal mixed layer depth shapes phytoplankton physiology, viral production, and accumulation in the North Atlantic".</p> <p> </p> <p>naamesqc10.7.2021 - Includes phytoplankton ROS, lipids, DOC, TEP, viruses, bacteria, phytoplankton, MLD, and buoyancy frequency.</p> <p>naamesvolume1 and naamesvolume2 = raw flow cytometry events of unstained samples, used to calculate phytoplankton biovolume. Ref is the same as Ref in naamesphysiologyvirusrawdata9.21.2021.</p>
Figure 2 from: Riera R, Escanez A, González Á, Sierra Á (2012) On the occurrence of egg masses of the diamond-shaped squid Thysanoteuthis rhombus Troschel, 1857 in the subtropical eastern Atlantic (Canary Islands). A potential commercial species? ZooKeys 222: 69-76. https://doi.org/10.3897/zookeys.222.2835
Figure 2 - Some Thysanoteuthis rhombus egg masses recorded (numbers refer to descriptions in Table 1 and Figure 1).
Figure 1 from: Riera R, Escanez A, González Á, Sierra Á (2012) On the occurrence of egg masses of the diamond-shaped squid Thysanoteuthis rhombus Troschel, 1857 in the subtropical eastern Atlantic (Canary Islands). A potential commercial species? ZooKeys 222: 69-76. https://doi.org/10.3897/zookeys.222.2835
Figure 1 - Distribution of egg masses of Thysanoteuthis rhombus in Canary Islands. Triangles: literature records. Circles: new data (numbers refer to descriptions in Table 1).
Morphological (body shape) and biting-dynamics quantitative data of parrotfishes Scarus ghobban and Scarus perrico from the Gulf of California
<p>Datasets generated during the development of the paper titled “Body shape is related to locomotion, microhabitat use, and ecological role in two sympatric parrotfish species (<em>Scarus ghobban</em> and <em>Scarus perrico</em>) from the Gulf of California” (currently submitted to the journal "Marine Biology"), an ecomorphological study that evaluates a potential divergence between the body shapes of the two most abundant and widespread parrotfishes in the Eastern Pacific/Gulf of California, <em>S. ghobban </em>and <em>S. perrico</em>, and its relationship with their microhabitat use, considering several behavioural/ecological aspects of their feeding behaviour in situ, e.g. swimming mode, type of substratum, biting dynamics. </p> <p> </p> <p>The first dataset displays the coordinates of the 13 landmarks analysed in the geometric morphometric analysis (GMA) used to mathematically represent/compare the body forms of the <em>S. ghobban</em> (n = 33) and <em>S. perrico</em> (n = 17) adult specimens. Landmarks: (1) anterior tip of the snout; (2) point of intersection between the dorsal margin of the head and a hypothetical vertical line crossing the center of the eye; (3) anterior insertion of the dorsal fin; (4) posterior insertion of the dorsal fin; (5) dorsal insertion of the caudal fin; (6) ventral insertion of the caudal fin; (7) posterior insertion of the anal fin; (8) anterior insertion of the anal fin; (9) origin of the pelvic fin; (10) origin of the isthmus; (11) posteriormost end of the operculum; (12) upper insertion of the pectoral fin; (13) lower insertion of the pectoral fin. </p> <p> </p> <p>The second dataset exhibits the three biting dynamics parameters of both <em>S. ghobban </em>(n = 62) and <em>S. perrico</em> (n = 73) adult individuals feeding in situ, quantified via video recording. Parameters: (1) number of bites within a feeding foray (BFF); (2) feeding rate (FR); (3) bite duration (BD). The total length (TL) of each individual is also provided, since a potential relationship between TL and each of these three parameters was also evaluated within the study.</p>
Supplementary material 4 from: Campana L, Cruz LR, Paresque R, Fagundes V (2022) Penile shape discriminates two cryptic species of Akodon Meyen, 1833 (Mammalia, Rodentia, Cricetidae) from eastern Brazil. ZooKeys 1134: 1-22. https://doi.org/10.3897/zookeys.1134.89587
Photographs of glans penis of both species and hybrids
Supplementary material 2 from: Campana L, Cruz LR, Paresque R, Fagundes V (2022) Penile shape discriminates two cryptic species of Akodon Meyen, 1833 (Mammalia, Rodentia, Cricetidae) from eastern Brazil. ZooKeys 1134: 1-22. https://doi.org/10.3897/zookeys.1134.89587
Frequency of characters
Supplementary material 1 from: Campana L, Cruz LR, Paresque R, Fagundes V (2022) Penile shape discriminates two cryptic species of Akodon Meyen, 1833 (Mammalia, Rodentia, Cricetidae) from eastern Brazil. ZooKeys 1134: 1-22. https://doi.org/10.3897/zookeys.1134.89587
Gazetteer of collecting localities and specimens examined
Population average skull model obtained by means of statistical shape modelling
<p>Sagittal Craniosynostosis (SC) is a congenital condition whereby the newborn skull develops abnormally due to premature ossification of the sagittal suture. Spring-assisted cranioplasty (SAC) is a minimally invasive surgical technique to treat SC where metallic distractors are used to reshape the newborn's head. Although safe and effective, SAC outcomes remain uncertain due to the limited understanding of skull-distractor interaction and limited information provided by the analysis of single surgical cases.</p> <p>Hereby, an SC population average skull model was created to simulate spring insertion by means of finite element analysis.</p>
Fluctuating environments promote evolvability by shaping adaptive variation accessible to populations (Data)
<p>Data used in "Fluctuating environments promote evolvability by shaping adaptive variation accessible to populations", along with the scripts and analysis files. These include the configuration files used for Avida and the Wright-Fisher simulations. </p>
Text-fig. 15. Scanning electron microscope (SEM) images of stamen with "Asteropollis-type pollen sp. 2"; Catefica locality, Portugal. a) Stamen with pollen in situ showing the dome-shaped extension of the connective with hairs; b–d) Pollen in situ in stamen in (a) showing poorly defined pentachotomocolpate (b, d) and possibly tetrachotomocolpate (c) apertures and semitectate-reticulate tectum; e) Detail of broken pollen grains showing the loosely attached reticulum, long scattered columellae and thick foot layer. Specimen, Catefica 49-S101209 (a–e). Scale bars = 600 Μm (a), 6 Μm (b–e). in The Early Cretaceous Mesofossil Flora Of Catefica, Portugal: Angiosperms
Text-fig. 15. Scanning electron microscope (SEM) images of stamen with "Asteropollis-type pollen sp. 2"; Catefica locality, Portugal. a) Stamen with pollen in situ showing the dome-shaped extension of the connective with hairs; b–d) Pollen in situ in stamen in (a) showing poorly defined pentachotomocolpate (b, d) and possibly tetrachotomocolpate (c) apertures and semitectate-reticulate tectum; e) Detail of broken pollen grains showing the loosely attached reticulum, long scattered columellae and thick foot layer. Specimen, Catefica 49-S101209 (a–e). Scale bars = 600 Μm (a), 6 Μm (b–e).
Whip it into shape: Revision of the Demansia psammophis (Schlegel, 1837) complex (Squamata: Elapidae), with a description of a new species from central Australia
<p>The genus <em>Demansia</em> Günther is the most diverse genus of Australian terrestrial elapids. A phylogenetic framework for the familiar but problematic taxa <em>D. psammophis</em> and <em>D</em>. <em>reticulata</em> (Gray) has been long overdue to ascertain interspecific relationships and resolve unclear taxonomic issues. Here we present integrated molecular phylogenetic and morphological analyses to review species delineation, resulting in confirmation that both <em>D. psammophis</em> and <em>D. reticulata</em> are full species and that populations referred to <em>D. r. cupreiceps</em> Storr are not distinguishable from more typical <em>D. reticulata</em>. We also find the widespread central Australian population to be specifically distinct. We redescribe <em>D. psammophis</em> and <em>D. reticulata</em> to clarify morphological and geographical boundaries and describe <a><em>D. cyanolacuna</em> <strong>sp. nov.</strong> </a>based on a combination of molecular genetic markers, details of colour and pattern, adult total length and a few morphometric attributes. We also designate a lectotype for <em>D. </em><a><em>psammophis</em> </a>from the original syntype series and comment on the necessity for further taxonomic refinement of this distinctive group. </p>
Edge disturbance shapes liana diversity and abundance but not liana-tree interaction network patterns in moist semi-deciduous forests, Ghana
<p>Edge disturbance can drive liana community changes and alter liana-tree interaction networks, with ramifications for forest functioning. Understanding edge effects on liana community structure and liana-tree interactions is therefore essential for forest management and conservation. We evaluated the response of liana community structure and the patterns of liana-tree interaction structure to forest edge in two moist semi-deciduous forests in Ghana (Asenanyo and Suhuma Forest Reserves: AFR and SFR, respectively). Liana community structure and liana-tree interactions were assessed in 24 50 × 50 m randomly located plots in three forest sites in each forest: edge, interior and deep-interior established at 0-50 m, 200 m and 400 m from edge. Edge effects positively and negatively influenced liana diversity in forest edges of AFR and SFR, respectively. There was a positive influence of edge disturbance on liana abundance in both forests. We observed anti-nested structure in all the liana-tree networks in AFR, while no nestedness was observed in the networks in SFR. The networks in both forests were less connected, and thus more modular and specialised than their null models. Many liana and tree species were specialised, with specialisation tending to be symmetrical. The plant species played different roles in relation to modularity. Most of the species acted as peripherals (specialists), with only a few species having structural importance to the networks. The latter species group consisted of connectors (generalists) and hubs (highly connected generalists). Some of the species showed consistency in their roles across the sites, while the roles of other species changed. Generally, liana species co-occurred randomly on tree species in all the forest sites, except edge site in AFR where lianas showed positive co-occurrence. Our findings deepen our understanding of the response of liana communities and liana-tree interactions to forest edge disturbance, which are useful for managing forest edge.</p>
Fig. 20 in Between areolated and band-shaped spots: a revision of Lacronia Strand, 1942 (Opiliones, Gonyleptidae)
Fig. 20. Lacronia tenuis (Roewer, 1917) comb. nov., ♂ (MNRJ 5533ꜝ), penis, distal part. A. Dorsal view. B. Left lateral view. C. Ventral view. D. Detail of stylus and ventral process, dorso-lateral view. Scale bars: A–C = 100 μm; D = 20 μm.
Fig. 4 in Between areolated and band-shaped spots: a revision of Lacronia Strand, 1942 (Opiliones, Gonyleptidae)
Fig. 4. Lacronia spp., schematic illustrations of the ♂ DS, showing the background variation and tubercles patterns of the specimens in vivo (except for L. boraceae (B. Soares, 1942) comb. nov., which information was only available in alcohol). A. L. ceci Kury & Orrico, 2006. B. L. camboriu Kury, 2003. C. L. ricardoi Kury, 2003. D. L. serripes (Mello-Leitão, 1923). E. L. boraceae comb. nov. F. L. nigra (B. Soares, 1942) comb. nov. G. L. tenuis (Roewer, 1917) comb. nov. Scale bars = 1 mm.
Fig. 1 in Between areolated and band-shaped spots: a revision of Lacronia Strand, 1942 (Opiliones, Gonyleptidae)
Fig. 1. The most frequent tree (k-values = 3, 4, 5, 6, 10, 15 and 20) retrieved using the Mendes (2011) protocol. Clade support values are indicated above the branches (Bremer index / SFq values). Clade stability is indicated below the branches by the sensitivity plots ('Navajo rugs'), which denotes the tested k-values (black squares indicate monophyly; white squares indicate non-monophyly). The k-values (= 2 and 3) retrieved two different trees, represented here as 2.1, 2.2, 3.1 and 3.2. in the Navajo rugs. Colored backgrounds indicate the following groups: Discocyrtus Holmberg, 1878 s. str. (grey), Lacronia Strand, 1942 (salmon), Mitobatinae Simon, 1879 (green), Neopachylinae Carvalho & Kury, 2020 (yellow), Pachylinae Sørensen, 1884 s. str. (purple) and Roeweriinae Carvalho & Kury, 2018 (blue). A red circle marks the DRMN-group. The unmarked groups are not members of either DRMN or Pachylinae s. str.
Fig. 6 Drosera elongata Exell & J.R.Laundon. a. Leaf shape with a pilose petiole and a in Synopsis of the genus Drosera (Droseraceae) in Angola and the Democratic Republic of the Congo
Fig. 6 Drosera elongata Exell & J.R.Laundon. a. Leaf shape with a pilose petiole and a relatively small, elliptic lamina; b. general morphology: very long stems with horizontal leaves and laterally arising, pubescent inflorescences; c. distribution according to the literature; d. province map of Angola and DRC with localities of examined herbarium specimens; e. pollen in tetrads with echinate, conical sculpture elements in low to medium density; f. dry seed 450 × 140 µm. — Scale bars: a = 1 cm; b = 2 cm; e = 10 µm; f = 20 µm.
Data and code associated with "How consistently do species leaf out or flower in the same order? Understanding the factors that shape this characteristic of plant communities."
<p>R script and data used in analyses for the manuscript, "How consistently do species leaf out or flower in the same order? Understanding the factors that shape this characteristic of plant communities." by C. Beiter & T. Crimmins, published in the International Journal of Biometeorology. </p> <p> </p>
Data from: Biotic and abiotic factors shaping bat activity in Maryland soybean fields
<p>Data and code for <em>Ecosphere</em> publication, "Biotic and abiotic factors shaping bat activity in Maryland soybean fields." @susanrw</p> <p> </p> <p><a href="https://doi.org/10.1002/ecs2.4575">https://doi.org/10.1002/ecs2.4575</a></p>
Stabilising transient ferromagnetic states in nanopatterned FeRh with shape-induced anisotropy
<p> </p> <p> </p> <p>Open data for "Stabilising transient ferromagnetic states in nanopatterned FeRh with shape-induced anisotropy" published in J. Phys. D: Appl. Phys. 56 485002 (2023)</p> <p>DOI: 10.1088/1361-6463/acf0cb</p> <p>https://iopscience.iop.org/article/10.1088/1361-6463/acf0cb</p>
Data for The eyes anticipate where objects will move based on their shape
<p>Raw data for publication "The eyes anticipate where objects will move based on their shape."</p> <p>Stewart and Fleming (2023). The eyes anticipate where an object will move based on its shape. <em>Current Biology,</em> 33(17), R894-R895.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.