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438 results for “3D imaging”
Binary segmentation images for 3D segmentation model training
<p>Binary segmentation images for 3D segmentation model training</p>
Outputs from new methods for 3D+time image segmentation and tracking
<p>Segmentation and tracking of 3D+time images of artificially generates spheres. <br> The file named _20_frames_of_moving_spheres.avi is a 20-frame video of artificially generated spheres moving in time, the file <br> named _resulf_of_20_frames_of_moving_spheres.avi has the result of 4D segmentation, using our new segmentation methods, of the spheres (colored blue) moving in time, and the file _tracking_of_artificial_data_in_20_frames.mp4 has the tracking of these spheres. Additionally, the file named _one_moving_sphere.avi is also a 20-frame video of an artificially generated sphere moving in time, the file named _segmentation_result_one_moving_sphere.avi has the result of 4D segmentation of the sphere (colored blue) moving in time, and the file named _segmentation_result_one_moving_sphere_with_some_missing_spheres.avi has the result of 4D segmentation of the sphere (colored blue) moving in time when frames 5, 10, and 15 are missing in the file _one_moving_sphere.avi.</p>
Figure 26 from: Akkari N, Koon-Bong Cheung D, Enghoff H, Stoev P (2013) Revolving SEM images visualising 3D taxonomic characters: application to six species of the millipede genus Ommatoiulus Latzel, 1884, with description of seven new species and an interactive key to the Tunisian members of the genus (Diplopoda, Julida, Julidae). ZooKeys 328: 5-45. https://doi.org/10.3897/zookeys.328.5763
Figure 26 - Ommatoiulus khroumiriensis sp. n. paratype, left posterior gonopod. Interactive SEM image. [Morphbank # 831016–831034]
Figures 20-25 from: Akkari N, Koon-Bong Cheung D, Enghoff H, Stoev P (2013) Revolving SEM images visualising 3D taxonomic characters: application to six species of the millipede genus Ommatoiulus Latzel, 1884, with description of seven new species and an interactive key to the Tunisian members of the genus (Diplopoda, Julida, Julidae). ZooKeys 328: 5-45. https://doi.org/10.3897/zookeys.328.5763
Figures 20-25 - Ommatoiulus khroumiriensis sp. n. paratypes, gonopod structures. 20 Right promerite, posterior view 21 Right posterior gonopod, mesal view 22 Right posterior gonopod, lateral view 23 Right posterior gonopod, meso-posterior view 24 Right posterior gonopod, anterior-mesal view 25 Right posterior gonopod,anterior view. Abbreviations: ap distal process of the promerite, ap2 lobed process, Co coxite, ds distal process of the solenomerite, F fovea, g seminal groove, hp3, hp4 distal processes of the solenomerite, i lateral incision of the promerite, mp blunt mesal process, M mesal ridge, Ms mesomerite, n notch of the solenomerite, pr triangular subapical process of the solenomerite, Px paracoxite, S solenomerite. Scale bar: 0.1 mm.
Figure 13 from: Akkari N, Koon-Bong Cheung D, Enghoff H, Stoev P (2013) Revolving SEM images visualising 3D taxonomic characters: application to six species of the millipede genus Ommatoiulus Latzel, 1884, with description of seven new species and an interactive key to the Tunisian members of the genus (Diplopoda, Julida, Julidae). ZooKeys 328: 5-45. https://doi.org/10.3897/zookeys.328.5763
Figure 13 - Ommatoiulus crassinigripes sp. n. paratype,right posterior gonopod. Interactive rotating SEM image. [Morphbank # 831189–831207]
Figure 19 from: Akkari N, Koon-Bong Cheung D, Enghoff H, Stoev P (2013) Revolving SEM images visualising 3D taxonomic characters: application to six species of the millipede genus Ommatoiulus Latzel, 1884, with description of seven new species and an interactive key to the Tunisian members of the genus (Diplopoda, Julida, Julidae). ZooKeys 328: 5-45. https://doi.org/10.3897/zookeys.328.5763
Figure 19 - Ommatoiulus kefi sp. n. holotype, right posterior gonopod. Interactive SEM image. [Morphbank # 831208-831227]
Figures 7-12 from: Akkari N, Koon-Bong Cheung D, Enghoff H, Stoev P (2013) Revolving SEM images visualising 3D taxonomic characters: application to six species of the millipede genus Ommatoiulus Latzel, 1884, with description of seven new species and an interactive key to the Tunisian members of the genus (Diplopoda, Julida, Julidae). ZooKeys 328: 5-45. https://doi.org/10.3897/zookeys.328.5763
Figures 7-12 - Ommatoiulus crassinigripes sp. n. paratype,gonopod structures. 7 Left promerite, posterior view 8 Right posterior gonopod, lateral view 9 Right posterior gonopod, anterior view 10 Right posterior gonopod, mesal view 11 Right posterior gonopod, posterior view 12 Right posterior gonopod latero-posterior view.Abbreviations: ap distal process of the promerite, ap1 apical mesal process, Co coxite, ds distal process of the solenomerite, F fovea, g seminal groove, ho hook-shaped process, hp1, hp1 distal processes of the solenomerite, i lateral margin incision of the promerite, M mesal ridge, Ms mesomerite, mp distal blunt process of the mesal ridge, n notch of the solenomerite, pr triangular process of the solenomerite, Px paracoxite, S solenomerite, T remnant of telepodite. Scale bar: 0.1 mm
Figure 42 from: Akkari N, Koon-Bong Cheung D, Enghoff H, Stoev P (2013) Revolving SEM images visualising 3D taxonomic characters: application to six species of the millipede genus Ommatoiulus Latzel, 1884, with description of seven new species and an interactive key to the Tunisian members of the genus (Diplopoda, Julida, Julidae). ZooKeys 328: 5-45. https://doi.org/10.3897/zookeys.328.5763
Figure 42 - Ommatoiulus crassinigripes sp. n., Ommatoiulus khroumiriensis sp. n. and Ommatoiulus punicus. Scatter diagram illustrating size of adult males expressed as maximum vertical body diameter (mm) vs number of podous rings in different developmental stadia (8–11RO).
Figure 40 from: Akkari N, Koon-Bong Cheung D, Enghoff H, Stoev P (2013) Revolving SEM images visualising 3D taxonomic characters: application to six species of the millipede genus Ommatoiulus Latzel, 1884, with description of seven new species and an interactive key to the Tunisian members of the genus (Diplopoda, Julida, Julidae). ZooKeys 328: 5-45. https://doi.org/10.3897/zookeys.328.5763
Figure 40 - Ommatoiulus chambiensis and Ommatoiulus xerophilus spp. n.Scatter diagram illustrating size of adult males expressed as maximum vertical body diameter (mm) vs number of podous rings in different developmental stadia (8–11RO).
Figure 41 from: Akkari N, Koon-Bong Cheung D, Enghoff H, Stoev P (2013) Revolving SEM images visualising 3D taxonomic characters: application to six species of the millipede genus Ommatoiulus Latzel, 1884, with description of seven new species and an interactive key to the Tunisian members of the genus (Diplopoda, Julida, Julidae). ZooKeys 328: 5-45. https://doi.org/10.3897/zookeys.328.5763
Figure 41 - Ommatoiulus punicus,specimen from Jebel Rsas, NE Tunisia, right posterior gonopod. Interactive SEM image. [Morphbank # 831228–831245]
Figure 35 from: Akkari N, Koon-Bong Cheung D, Enghoff H, Stoev P (2013) Revolving SEM images visualising 3D taxonomic characters: application to six species of the millipede genus Ommatoiulus Latzel, 1884, with description of seven new species and an interactive key to the Tunisian members of the genus (Diplopoda, Julida, Julidae). ZooKeys 328: 5-45. https://doi.org/10.3897/zookeys.328.5763
Figure 35 - Ommatoiulus xerophilus sp. n. paratype, right posterior gonopod. Interactive SEM image. [Morphbank # 831246–831263]
Figures 36-39 from: Akkari N, Koon-Bong Cheung D, Enghoff H, Stoev P (2013) Revolving SEM images visualising 3D taxonomic characters: application to six species of the millipede genus Ommatoiulus Latzel, 1884, with description of seven new species and an interactive key to the Tunisian members of the genus (Diplopoda, Julida, Julidae). ZooKeys 328: 5-45. https://doi.org/10.3897/zookeys.328.5763
Figures 36-39 - Ommatoiulus zaghouani sp. n. holotype, gonopod structures. 36 Left promerite, posterior view 37 Left posterior gonopod, mesal view 38 Left posterior gonopods, anterior view 39 Left posterior gonopods, postero-lateral view. Abbreviations: bp1, bp2: small bumps on the apical lateral process, Co coxite, ds distal process of the solenomerite, F fovea, fl folded lamella, g seminal groove, M mesal ridge, Ms mesomerite, i lateral incision on the promerite, Px paracoxite, rp apical mesal process of the promerite, S solenomerite, se serrated process, tp: triangular distal process. Scale bar: 0.1 mm.
Figures 31-34 from: Akkari N, Koon-Bong Cheung D, Enghoff H, Stoev P (2013) Revolving SEM images visualising 3D taxonomic characters: application to six species of the millipede genus Ommatoiulus Latzel, 1884, with description of seven new species and an interactive key to the Tunisian members of the genus (Diplopoda, Julida, Julidae). ZooKeys 328: 5-45. https://doi.org/10.3897/zookeys.328.5763
Figures 31-34 - Ommatoiulus xerophilus sp. n. paratype,gonopod structures. 31 Left gonopod, mesal view 32 Rightpromerite, posterior view 33 Rightposterior gonopod, mesal view 34 Rightposterior gonopod, latero-posterior view. Abbreviations: ap distal process of the promerite, Co coxite, ds distal process of the solenomerite, F fovea, g seminal groove, M mesal ridge, Ms mesomerite, P promerite, Px paracoxite, S solenomerite, se serrations, wl wrinkled lamella. Scale bar: 0.1 mm.
Figure 6 from: Akkari N, Koon-Bong Cheung D, Enghoff H, Stoev P (2013) Revolving SEM images visualising 3D taxonomic characters: application to six species of the millipede genus Ommatoiulus Latzel, 1884, with description of seven new species and an interactive key to the Tunisian members of the genus (Diplopoda, Julida, Julidae). ZooKeys 328: 5-45. https://doi.org/10.3897/zookeys.328.5763
Figure 6 - Ommatoiulus chambiensis sp. n. paratype,right posterior gonopod. Interactive rotating SEM image. [Morphbank # 831160–831177, 831188]
Figures 14-18 from: Akkari N, Koon-Bong Cheung D, Enghoff H, Stoev P (2013) Revolving SEM images visualising 3D taxonomic characters: application to six species of the millipede genus Ommatoiulus Latzel, 1884, with description of seven new species and an interactive key to the Tunisian members of the genus (Diplopoda, Julida, Julidae). ZooKeys 328: 5-45. https://doi.org/10.3897/zookeys.328.5763
Figures 14-18 - Ommatoiulus kefi sp. n. holotype, gonopod structures. 14 Left promerite, posterior view 15 Left posterior gonopod, posterior view 16 Right posterior gonopod, anterior view 17 Right posterior gonopod, mesal view 18 Right posterior gonopod, mesal view. Abbreviations: al apical lobe of the promerite, al1 apical folded lamella of the solenomerite, Co coxite, ds distal process of the solenomerite, F fovea, g seminal groove, lb lateral lobe, m1, m2 apical processes of the mesomerite, M mesal ridge, me median lobe, Ms mesomerite, n notch of the solenomerite, pr triangular process of the solenomerite, Px paracoxite, S solenomerite, T telopodite. Scale bar: 0.1 mm
Figures 27-30 from: Akkari N, Koon-Bong Cheung D, Enghoff H, Stoev P (2013) Revolving SEM images visualising 3D taxonomic characters: application to six species of the millipede genus Ommatoiulus Latzel, 1884, with description of seven new species and an interactive key to the Tunisian members of the genus (Diplopoda, Julida, Julidae). ZooKeys 328: 5-45. https://doi.org/10.3897/zookeys.328.5763
Figures 27-30 - Ommatoiulus xenos sp. n. holotype,gonopod structures. 27 Right promerite, posterior view 28 Right posterior gonopod, mesal view 29 Right posterior gonopod, antero-lateral view 30 Right posterior gonopod, posterior view. Abbreviations: Co coxite, ds distal process of the solenomerite, F fovea, fl folded lamella, g seminal groove, i lateral incision of the promerite, M mesal ridge, mp distal process, Ms mesomerite, pr blunt process of the solenomerite, Px paracoxite, S solenomerite. Scale bar: 0.1 mm.
Figures 1-5 from: Akkari N, Koon-Bong Cheung D, Enghoff H, Stoev P (2013) Revolving SEM images visualising 3D taxonomic characters: application to six species of the millipede genus Ommatoiulus Latzel, 1884, with description of seven new species and an interactive key to the Tunisian members of the genus (Diplopoda, Julida, Julidae). ZooKeys 328: 5-45. https://doi.org/10.3897/zookeys.328.5763
Figures 1-5 - Ommatoiulus chambiensis sp. n. paratype,gonopod structures. 1 Right gonopod, mesal view 2 Left promerite, posterior view 3 Left posterior gonopod, mesal view 4 Right posterior gonopod, anterior view 5 Right posterior gonopod, posterior view. Abbreviations: ap apical process, ds distal process of the solenomerite, F fovea, g seminal groove, i incision on lateral margin of the promerite, lp lateral apical process of promerite, M mesal ridge, Ms mesomerite, P promerite, pr triangular process of the solenomerite, Px paracoxite, S solenomerite, se serrations, sp spikes, T remnant of telopodite, wl wrinkled lamella. Scale bar: 0.1 mm.
Dataset with results of "Joint 2D to 3D image registration workflow for comparing multiple slice photographs and CT scans of apple fruit with internal disorders"
<p><strong>Summary</strong></p> <p>This dataset contains all results from the paper "Joint 2D to 3D image registration workflow for comparing multiple slice photographs and CT scans of apple fruit with internal disorders". Most notably, this dataset contains the corresponding CT slices for slice photographs of 1347 'Kanzi' apples. This dataset also contains data of the results section, metadata required to make the registration code run, and segmentation masks of the apple slice photographs. The "raw" data that was used to produce these results can be found in another Zenodo dataset: <a href="../record/8167285">https://zenodo.org/record/8167285</a>.</p> <p><br><strong>Description</strong></p> <ul> <li><strong>registered ct photo side-by-side view.zip </strong>is the easiest way to explore the registered CT photo image pairs. For every apple slice it contains a .png image consisting of the slice photo, registered CT slice and a combined view (photo=green, CT=purple) side-by-side. The resolution was reduced to reduce the file size.</li> <li><strong>registered ct slices.zip </strong>contains the full resolution CT slices as .tiff files. The matching slice photos can be found in <strong>slice_photos_crop.zip</strong> in <a href="../record/8167285">https://zenodo.org/record/8167285</a>.</li> <li><strong>photo metadata.zip </strong>contains all metadata files required to run the code on <a href="https://github.com/D1rk123/apple_photo_ct_workflow">https://github.com/D1rk123/apple_photo_ct_workflow</a>.</li> <li><strong>results.zip</strong> contains the IPCED annotations and per apple metrics that were used to calculate all the average metrics and tables in the results section of the paper.</li> <li><strong>subset experiment registered annotation slice.zip </strong>contains the full resolution CT slices of the annotation slice in the subset experiment as .tiff files.</li> <li><strong>segmentation masks.zip </strong>contains slice photo segmentation masks as .png images. There are subfolders for the training set, the test set and the masks used for the workflow in the paper.</li> </ul> <p><br><strong>Research group</strong><br>This dataset was produced by the Computational Imaging group at Centrum Wiskunde & Informatica (CI-CWI) in Amsterdam, The Netherlands: <a href="https://www.cwi.nl/research/groups/computational-imaging">https://www.cwi.nl/research/groups/computational-imaging</a></p> <p><strong>Contact details</strong><br>dirk [dot] schut [at] cwi [dot] nl</p> <p><strong>Acknowledgments</strong><br>This work was funded by the Dutch Research Council (NWO) through the UTOPIA project (ENWSS.2018.003).</p>
Patient-Assisted Compression in 3D - Impact on Image Quality and Workflow
ClinicalTrials.gov study NCT03456427. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Applicability of 3D Printing and 3D Digital Image Reconstruction in the Planning of Complex Liver Surgery (LIV3DPRINT).
ClinicalTrials.gov study NCT03416387. IPD Sharing: YES. Countries: 1. Publications: 0.
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OpenNeuro
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