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779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters [MAZ motif deletion RNA-seq]
GEO Series GSE157138. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
CRISPR-mediated deletion of prostate cancer risk-associated CTCF loop anchors identifies repressive chromatin loops
GEO Series GSE118514. Homo sapiens. 32 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus [RNA-Seq, HiC_C2C12, ChIP-Seq]
GEO Series GSE104427. Mus musculus. 27 samples. Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing.
RNA-Seq, ChIP-Seq and HiC of Wild Type and CTCF cKO Liver
GEO Series GSE151503. Mus musculus. 30 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
CTCF and CohesinSA-1 Mark Active Promoters and Boundaries of Repressive Chromatin Domains in Primary Human Erythroid Cells [ChIP-Seq]
GEO Series GSE67783. Homo sapiens. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Hi-C following CTCF RNAi in LNCaP cells to determine changes to topological domains
GEO Series GSE125640. Homo sapiens. 6 samples. Type: Other.
CTCF binding polarity determines chromatin looping [ChIP-seq]
GEO Series GSE71158. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Integrative Single-Cell Analysis of Gene Expression and Chromatin Accessibility Reveals CTCF as a Key Regulator of Stem Cell Differentiation and Lung Morphogenesis [multi-omics]
GEO Series GSE286981. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Dynamic CTCF occupancy during differentiation rewires cis-regulatory module interactions essential for development [HiChIP]
GEO Series GSE131054. Homo sapiens. 3 samples. Type: Other.
Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia
GEO Series GSE182317. Homo sapiens. 171 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Genome variation profiling by genome tiling array; Methylation profiling by array; Other.
CTCF-Binding Elements Mediate Accessibility of RAG Substrates During Chromatin Scanning
GEO Series GSE113023. Mus musculus. 78 samples. Type: Other.
The aberrant epigenome of DNMT3B-mutated ICF1 patient iPSCs is amenable to correction, with the exception of a subset of regions with H3K4me3- and/or CTCF-based epigenetic memory
GEO Series GSE197925. Homo sapiens. 100 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
PARP1- and CTCF-mediated interactions between active and repressed chromatin at the lamina promote oscillating transcription
GEO Series GSE26880. Homo sapiens. 23 samples. Type: Other; Expression profiling by high throughput sequencing.
Single-cell Multiomics Analysis Reveals CTCF as a Key Regulator of Lung Morphogenesis and Progenitor Maintenance
GEO Series GSE311175. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Differences in CTCF binding site sequence are associated with unique regulatory and functional trends during embryonic stem cell differentiation [ChIP-Seq]
GEO Series GSE39502. Mus musculus. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Ectopic recruitment of the CTCF N-terminal domain with two proximal zinc-finger domains as a tool for 3D genome engineering [RNA-seq]
GEO Series GSE300306. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
OCT4, NANOG and CTCF in human embryonic stem cells
GEO Series GSE21200. Homo sapiens. 17 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by array.
DNA methylation insulates exons from CTCF loops with nuclear speckles (RNA-Seq)
GEO Series GSE217759. Homo sapiens. 30 samples. Type: Expression profiling by high throughput sequencing.
CTCF HiChIP experiments in cells treatd with control shRNA or BHLHE40 shRNA
GEO Series GSE137849. Homo sapiens. 4 samples. Type: Other.
Reciprocal regulation of cardiac chromatin by the chromatin structural proteins HMGB and CTCF
GEO Series GSE80453. Rattus norvegicus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.