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345
datasets available to search
ShareScore release 0.9.0
Dataset results
345 results for “DNA typing”
DNA Methylome and 3D Chromatin Landscape of Cell Types Across the Mouse Brain [11C_190620]
GEO Series GSE216436. Mus musculus. 1387 samples. Type: Methylation profiling by high throughput sequencing.
DNA Methylome and 3D Chromatin Landscape of Cell Types Across the Mouse Brain [7E and 7F]
GEO Series GSE236973. Mus musculus. 4533 samples. Type: Methylation profiling by high throughput sequencing.
DNA Methylome and 3D Chromatin Landscape of Cell Types Across the Mouse Brain [8F and 8G]
GEO Series GSE237288. Mus musculus. 5906 samples. Type: Methylation profiling by high throughput sequencing.
Next Generation Sequencing based on the DNA fragment pulled down by p53 antibody (Santa Cruz, sc-126) from MCF7 wile type and MCF7 MDMX-C463A/WT cells.
GEO Series GSE109481. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Non-CG DNA methylation and MeCP2 stabilize repeated tuning of long genes that distinguish closely related neuron types.
GEO Series GSE237089. synthetic construct; Mus musculus. 108 samples. Type: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
DNA Methylome and 3D Chromatin Landscape of Cell Types Across the Mouse Brain [13F, 14A, 14B]
GEO Series GSE233185. Mus musculus. 6417 samples. Type: Methylation profiling by high throughput sequencing.
DNA Methylome and 3D Chromatin Landscape of Cell Types Across the Mouse Brain [11A_191107]
GEO Series GSE216188. Mus musculus. 1483 samples. Type: Methylation profiling by high throughput sequencing.
DNA Methylome and 3D Chromatin Landscape of Cell Types Across the Mouse Brain [12A_191017]
GEO Series GSE230223. Mus musculus. 1504 samples. Type: Methylation profiling by high throughput sequencing.
DNA microarray analysis in hippocampus of Wild-type (WT), AtrxΔE2, and TMPyP4-treated AtrxΔE2 mice.
GEO Series GSE103032. Mus musculus. 2 samples. Type: Expression profiling by array.
Non-CG DNA methylation and MeCP2 stabilize repeated tuning of long genes that distinguish closely related neuron types [MERFISH]
GEO Series GSE237086. Mus musculus; synthetic construct. 5 samples. Type: Other.
DNA Methylome and 3D Chromatin Landscape of Cell Types Across the Mouse Brain [18A, 18B, 6E, 6F]
GEO Series GSE236451. Mus musculus. 9393 samples. Type: Methylation profiling by high throughput sequencing.
Mutating Zta(N182) to S, Q, T, I, and V changes sequence specific DNA binding to four types of DNA (65k data set)
GEO Series GSE126588. synthetic construct; Mus musculus. 36 samples. Type: Other.
DNA Methylome and 3D Chromatin Landscape of Cell Types Across the Mouse Brain [9A, 9B, 9C]
GEO Series GSE237455. Mus musculus. 5721 samples. Type: Methylation profiling by high throughput sequencing.
DNA Methylome and 3D Chromatin Landscape of Cell Types Across the Mouse Brain [11K_201022]
GEO Series GSE230219. Mus musculus. 1107 samples. Type: Methylation profiling by high throughput sequencing.
DNA Methylome and 3D Chromatin Landscape of Cell Types Across the Mouse Brain [11B_190325]
GEO Series GSE216300. Mus musculus. 1451 samples. Type: Methylation profiling by high throughput sequencing.
DNA Methylome and 3D Chromatin Landscape of Cell Types Across the Mouse Brain [10C_190411]
GEO Series GSE215213. Mus musculus. 1439 samples. Type: Methylation profiling by high throughput sequencing.
mRNA expression profiling of wild-type and ABCA1 knockout IMR90 cells during DNA damage-induced senescence
GEO Series GSE222676. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
DNA methylation in the chromatin landscape of healthy and injured cell types in the human kidney
<p><strong>*** To access this data, please go to <a href="https://www.kpmp.org/doi-collection/10-48698-hhe6-yv15">Kidney Precision Medicine Project (KPMP)</a> <br></strong></p> <p>Whole Genome Bisulfite Sequence WGBS in human kidney tissue. There are 13 nephrectomies, two biopsies each split into two kidney compartments glomerulus (GLOM) and tubule interstitium (TI). One of the nephrectomies was sequenced in the first and second batches to evaluate the sequence quality. Then we had 30 kidney samples plus three blood samples added like controls with 2 negative and 1 positive.<br>Genomic DNA is isolated using the PureLink Pro 96 Genomic DNA Kit (Cat# K182104A). DNA quantity and quality are assessed using the Qubit Fluorometer 4.1 (Invitrogen). Bisulfite conversion was performed using the EpiTect Fast DNA Bisulfite Kit (Qiagen Cat# 59824). An input of 10 ng was used for library prep. Library prep with QIAseq Methyl DNA Library Kit (Cat# 180502) was used to amplify and laminate Illumina adaptors. Library purification was performed using QIAseq Beads. The library quality was assessed using the Agilent Bioanalyzer 2100 and Qubit Fluorometer 4.1. Multiple libraries were pooled in equal molarity. A final concentration of 300 pM was loaded onto the NovaSeq 6000 sequencer (Illumina) for 150 bp paired-end sequencing. Approximately 200 million read pairs (400 million reads total) were generated per library. An EpiTect Unmethylated DNA control (Qiagen Cat# 59568) was used for the first and second batches. The EpiTect Methylated DNA control (Qiagen Cat# 59655) was sequencing run the second batch. Sequencing quality control, mapping, and methylation analysis were performed using the pipeline with FastC 0.11.5, MultiQC v1.8 TrimGalore 0.6.7 to remove Illumina adapter sequences and 10 bp 5' prime and 5bp 3' prime. Bismark 0.23.1 DNA Mapping: Non-directional mapping to the hg38/GRCh38. The data in Zenodo are the bigwig for each experiment 33 (15 GLOM and 15 TI and blood 2 Negative 1 Positive), There are two merged bigwigs for GLOM and TI samples and a metadata file.</p> <p>Published in: DOI: <a href="https://doi.org/10.1038/s41467-023-44467-6" target="_blank" rel="noopener"> 10.1038/s41467-023-44467-6 </a></p>
DNA Methylome and 3D Chromatin Landscape of Cell Types Across the Mouse Brain [BICCN-11H_200813]
GEO Series GSE230339. Mus musculus. 1506 samples. Type: Methylation profiling by high throughput sequencing.
DNA Methylome and 3D Chromatin Landscape of Cell Types Across the Mouse Brain [BICCN-11G_210204]
GEO Series GSE230336. Mus musculus. 1519 samples. Type: Methylation profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.