Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
3,682
datasets available to search
ShareScore release 0.9.0
Dataset results
3,682 results for “ROOTS”
Fine root morphology in plots dominated by trees that associate with arbuscular mycorrhizal or ectomycorrhizal fungi in the N fertilized and reference watershed at the Bear Brook Watershed in Maine, USA during the final year of N fertilization (2016) and during the year after N fertilization ceased (2017).
Our objective was to detect possible differences in N fertilization responses of fine root morphology in plots dominated by trees that associate with arbuscular mycorrhizal fungi (AM) or ectomycorrhizal fungi (ECM). To do this, we sampled fine roots in a plot network of 6 AM and 6 ECM dominated (>65% diameter at breast height) 10 x 10 m plots in the lower elevation hardwood zone of both the reference and N fertilized watersheds (N=24 plots) at Bear Brook Watershed, in Maine USA during final year of N fertilization at Bear Brook in 2016 and during the year after N fertilization ceased in 2017.
Long-term Carbon and Nitrogen, and Phosphorus Dynamics of Leaf and Fine Root Litter project (LIDET-Long-term Intersite Decomposition Experiment Team) data for the ARC, Arctic LTER. 1990 to 2000.
This file is from the Long-term Carbon and Nitrogen, and Phosphorus Dynamics of Leaf and Fine Root Litter project (LIDET-Long-term Intersite Decomposition Experiment Team). This file contains only the Arctic LTER data. In particular the mass looses over the ten year study. Three types of fine roots (graminoid, hardwood, and conifer), six types of leaf litter (which ranged in lignin/nitrogen ratio from 5 to 75), and wooden dowels were used for litter incubations over a ten year period.
Effects of mammalian browsing on fine root processes and production in the floodplains of BCEF
The effects of browsing by moose and snowshoe hares on fine root production, mortality and decomposition in early successional forest ecosystems along the Tanana River floodplain in interior Alaska were studied over a 3 year period using minirhizotrons placed inside and outside large permanent exclosures. Fine root production and mortality varied seasonally, with greatest rates of production occurring during June each year, and greatest rates of mortality occurring in fall and over winter. Annual production and mortality during 1993, a year of unusually low precipitation, were significantly higher than during either 1992 or 1994. Aboveground herbivory significantly reduced monthly rates of fine root production, and on an annual basis, fine root production of browsed plots (311.4 - 31.7 mm tube-1 yr-1) was significantly less than that of unbrowsed plots (453.8-49.8 mm tube-1 yr-1) when averaged over 3 years. Because herbivory had less of an effect on monthly or annual rates of fine root mortality, fine root turnover was higher for browsed stands. Browsed plants had a higher percentage of annual production in surface soil layers. Production on all plots shifted to deeper soil layers as the growing season progressed; this shift occurred deeper in the profile for unbrowsed plants than for browsed plants. We used a parameter estimation program (Program MARK) to generate fine root survival and decomposition estimates from models testing the direct and interactive effects of time period, cohort, i.e., when the root first appeared, age of the root, browsing, and site on fine root longevity and decomposability. Cohort effects showed that survival of fine roots was greatest for roots that first appeared in May, and progressively declined for roots first appearing during subsequent time periods, while aged-based estimates showed a rapid decline in survival over the interval following first appearance. Survival and decomposition estimates were inversely correlated within a grow
Fine root and coarse root biomass in Bonaza Creek Experimental Forest: 1990-1991
Fine root and coarse root biomass data collected in Bonaza Creek Experimental Forest from 1990-1991.
Fungal colonization of fine roots and foliar %N, %C, d15N, d13C, and gas exchange of seedlings outplanted at Finger Mountain and the Anaktuvuk River Fire.
This dataset contains proportion of fine root length colonized by root-associated fungi, foliar %N, %C, d15N, d13C, and maximum photosynthesis, respiration, LAI, and CUE for Picea mariana, Picea glauca, Alnus viridis, and Betula neo-alaskana seedlings inoculated with root-associated fungal communities and outplanted at Finger Mountain and the Anaktuvuk River Fire burn scars.
Plant-mediated root methane emissions and oxidation in a thermokarst bog complex in the Bonanza Creek LTER Experimental Forest I - Standard Oxic Methane Fluxes 2015
Vascular plants are important in the wetland methane cycle but their effect on production, oxidation, and transport has high uncertainty, limiting our ability to predict emissions. Vegetation operated on top of baseline methane emissions, which varied with proximity to the thawing permafrost margin. Emissions from vegetated plots increased over the season, resulting in cumulative seasonal methane emissions that were 4.1-5.2 g m-2 season-1 greater than unvegetated plots. Mass balance calculations signify these greater emissions were due to increased methane production (3.0-3.5 g m-2 season-1) and decreased methane oxidation (1.1-1.6 g m-2 season-1). Minimal oxidation occurred along the plant-transport pathway and oxidation was suppressed outside the plant pathway. Our data indicate suppression of methane oxidation was stimulated by root exudates fueling competition among microbes for electron acceptors. Root exudates are known to fuel methane production and our work provides evidence they also decrease methane oxidation. This dataset contains the 2015 weekly oxic methane flux from treatment plots within a bog complex in the Bonanza Creek LTER. Treatments include natural-vegetation, simulated-aerenchyma, and sphagnum-only. No updates are planned.
Plant-mediated root methane emissions and oxidation in a thermokarst bog complex in the Bonanza Creek LTER Experimental Forest II - Non-standard Anoxic Methane Fluxes and Associated Standard Oxic Fluxes 2015
Vascular plants are important in the wetland methane cycle but their effect on production, oxidation, and transport has high uncertainty, limiting our ability to predict emissions. Vegetation operated on top of baseline methane emissions, which varied with proximity to the thawing permafrost margin. Emissions from vegetated plots increased over the season, resulting in cumulative seasonal methane emissions that were 4.1-5.2 g m-2 season-1 greater than unvegetated plots. Mass balance calculations signify these greater emissions were due to increased methane production (3.0-3.5 g m-2 season-1) and decreased methane oxidation (1.1-1.6 g m-2 season-1). Minimal oxidation occurred along the plant-transport pathway and oxidation was suppressed outside the plant pathway. Our data indicate suppression of methane oxidation was stimulated by root exudates fueling competition among microbes for electron acceptors. Root exudates are known to fuel methane production and our work provides evidence they also decrease methane oxidation. This dataset contains the 2015 weekly anoxic methane flux from treatment plots within a bog complex in the Bonanza Creek LTER. Anoxic measurements used with oxic measurements to calculate the fraction of methane oxidized. Treatments include natural-vegetation, simulated-aerenchyma, and sphagnum-only. No updates are planned.
Plant-mediated root methane emissions and oxidation in a thermokarst bog complex in the Bonanza Creek LTER Experimental Forest III - Non-standard Dark Methane Fluxes and Associated Standard Oxic Fluxes 2015
Vascular plants are important in the wetland methane cycle but their effect on production, oxidation, and transport has high uncertainty, limiting our ability to predict emissions. Vegetation operated on top of baseline methane emissions, which varied with proximity to the thawing permafrost margin. Emissions from vegetated plots increased over the season, resulting in cumulative seasonal methane emissions that were 4.1-5.2 g m-2 season-1 greater than unvegetated plots. Mass balance calculations signify these greater emissions were due to increased methane production (3.0-3.5 g m-2 season-1) and decreased methane oxidation (1.1-1.6 g m-2 season-1). Minimal oxidation occurred along the plant-transport pathway and oxidation was suppressed outside the plant pathway. Our data indicate suppression of methane oxidation was stimulated by root exudates fueling competition among microbes for electron acceptors. Root exudates are known to fuel methane production and our work provides evidence they also decrease methane oxidation. This dataset contains the 2015 weekly anoxic control methane flux from treatment plots within a bog complex in the Bonanza Creek LTER. Anoxic control measurements used to assess the effect of the anoxic fluxes on results. Treatments include natural-vegetation, simulated-aerenchyma, and sphagnum-only. No updates are planned.
Plant-mediated root methane emissions and oxidation in a thermokarst bog complex in the Bonanza Creek LTER Experimental Forest IV - Oxic and Anoxic Methane Fluxes on Isolated Carex Plants 2015
Vascular plants are important in the wetland methane cycle but their effect on production, oxidation, and transport has high uncertainty, limiting our ability to predict emissions. Vegetation operated on top of baseline methane emissions, which varied with proximity to the thawing permafrost margin. Emissions from vegetated plots increased over the season, resulting in cumulative seasonal methane emissions that were 4.1-5.2 g m-2 season-1 greater than unvegetated plots. Mass balance calculations signify these greater emissions were due to increased methane production (3.0-3.5 g m-2 season-1) and decreased methane oxidation (1.1-1.6 g m-2 season-1). Minimal oxidation occurred along the plant-transport pathway and oxidation was suppressed outside the plant pathway. Our data indicate suppression of methane oxidation was stimulated by root exudates fueling competition among microbes for electron acceptors. Root exudates are known to fuel methane production and our work provides evidence they also decrease methane oxidation. This dataset contains 2015 monthly methane fluxes from isolated Carex plants in a bog complex in the Bonanza Creek LTER. Isolated plant fluxes were used to partition the flux from the plant mediated pathway.
Plant-mediated root methane emissions and oxidation in a thermokarst bog complex in the Bonanza Creek LTER Experimental Forest V - Raw Microbial Community Analysis Data 2015
Vascular plants are important in the wetland methane cycle but their effect on production, oxidation, and transport has high uncertainty, limiting our ability to predict emissions. Vegetation operated on top of baseline methane emissions, which varied with proximity to the thawing permafrost margin. Emissions from vegetated plots increased over the season, resulting in cumulative seasonal methane emissions that were 4.1-5.2 g m-2 season-1 greater than unvegetated plots. Mass balance calculations signify these greater emissions were due to increased methane production (3.0-3.5 g m-2 season-1) and decreased methane oxidation (1.1-1.6 g m-2 season-1). Minimal oxidation occurred along the plant-transport pathway and oxidation was suppressed outside the plant pathway. Our data indicate suppression of methane oxidation was stimulated by root exudates fueling competition among microbes for electron acceptors. Root exudates are known to fuel methane production and our work provides evidence they also decrease methane oxidation. This dataset contains 2015 results from monthly DNA analyses taken on cores from natural conditions in a bog complex in the Bonanza Creek LTER.
Plant-mediated root methane emissions and oxidation in a thermokarst bog complex in the Bonanza Creek LTER Experimental Forest VI - Raw Oxygen Injection Experiment Data 2015
Vascular plants are important in the wetland methane cycle but their effect on production, oxidation, and transport has high uncertainty, limiting our ability to predict emissions. Vegetation operated on top of baseline methane emissions, which varied with proximity to the thawing permafrost margin. Emissions from vegetated plots increased over the season, resulting in cumulative seasonal methane emissions that were 4.1-5.2 g m-2 season-1 greater than unvegetated plots. Mass balance calculations signify these greater emissions were due to increased methane production (3.0-3.5 g m-2 season-1) and decreased methane oxidation (1.1-1.6 g m-2 season-1). Minimal oxidation occurred along the plant-transport pathway and oxidation was suppressed outside the plant pathway. Our data indicate suppression of methane oxidation was stimulated by root exudates fueling competition among microbes for electron acceptors. Root exudates are known to fuel methane production and our work provides evidence they also decrease methane oxidation. This dataset contains mo monthly 2015 oxygen decay rates from unmanipulated conditions as well as in plots where vascular vegetation was removed.
Root carbon/nitrogen data: BioCON : Biodiversity, Elevated CO2, and N Enrichment
BioCON (Biodiversity, CO2, and Nitrogen) is an ecological experiment started in 1997 at the University of Minnesota's Cedar Creek Ecosystem Science Reserve. BioCON's goal is to explore the ways in which plant communities will respond to three environmental changes that are known to be occurring on a global scale: increasing nitrogen deposition, increasing atmospheric CO2, and decreasing biodiversity. Why Biodiversity, CO2, and Nitrogen? While there are many uncertainties in global change biology, there are also some well documented facts. Some of these are: 1. The amount of carbon dioxide (CO2) in the atmosphere is rising. Since the industrial revolution, the CO2 concentration in the atmosphere has increased from approximately 275 parts per million (ppm) to about 378 ppm today. This has been largely the result of fossil fuel burning. It is expected that CO2 levels will continue to rise, and that by the year 2050 these levels will be approximately 550 ppm. CO2 is the raw material for photosynthesis and is known to affect plant growth and development. 2. The amount of nitrogen moving through terrestrial ecosystems has increased in the recent past. While natural "background" levels of nitrogen fixation have remained constant, human additions to the system through fertilizer production and fossil fuel use have increased dramatically. Nitrogen is a key nutrient for plant growth and plays a critical role in plant community structure and composition in many environments. 3. Biodiversity levels are falling. While the research and data are not as complete as they are for CO2 and nitrogen, data indicate that the number of species globally, is being reduced. Perhaps more important for ecosystem function, diversity levels on local to regional scales have fallen due to land use change, biotic invasion and many other drivers. While much is known about how each of these factors affects ecosystem functioning, many questions remain. There is also little data on how these issues affe
Root ingrowth biomass: BioCON : Biodiversity, Elevated CO2, and N Enrichment
BioCON (Biodiversity, CO2, and Nitrogen) is an ecological experiment started in 1997 at the University of Minnesota's Cedar Creek Ecosystem Science Reserve. BioCON's goal is to explore the ways in which plant communities will respond to three environmental changes that are known to be occurring on a global scale: increasing nitrogen deposition, increasing atmospheric CO2, and decreasing biodiversity. Why Biodiversity, CO2, and Nitrogen? While there are many uncertainties in global change biology, there are also some well documented facts. Some of these are: 1. The amount of carbon dioxide (CO2) in the atmosphere is rising. Since the industrial revolution, the CO2 concentration in the atmosphere has increased from approximately 275 parts per million (ppm) to about 378 ppm today. This has been largely the result of fossil fuel burning. It is expected that CO2 levels will continue to rise, and that by the year 2050 these levels will be approximately 550 ppm. CO2 is the raw material for photosynthesis and is known to affect plant growth and development. 2. The amount of nitrogen moving through terrestrial ecosystems has increased in the recent past. While natural "background" levels of nitrogen fixation have remained constant, human additions to the system through fertilizer production and fossil fuel use have increased dramatically. Nitrogen is a key nutrient for plant growth and plays a critical role in plant community structure and composition in many environments. 3. Biodiversity levels are falling. While the research and data are not as complete as they are for CO2 and nitrogen, data indicate that the number of species globally, is being reduced. Perhaps more important for ecosystem function, diversity levels on local to regional scales have fallen due to land use change, biotic invasion and many other drivers. While much is known about how each of these factors affects ecosystem functioning, many questions remain. There is also little data on how these issues affe
Root biomass data: BioCON : Biodiversity, Elevated CO2, and N Enrichment
BioCON (Biodiversity, CO2, and Nitrogen) is an ecological experiment started in 1997 at the University of Minnesota's Cedar Creek Ecosystem Science Reserve. BioCON's goal is to explore the ways in which plant communities will respond to three environmental changes that are known to be occurring on a global scale: increasing nitrogen deposition, increasing atmospheric CO2, and decreasing biodiversity. Why Biodiversity, CO2, and Nitrogen? While there are many uncertainties in global change biology, there are also some well documented facts. Some of these are: 1. The amount of carbon dioxide (CO2) in the atmosphere is rising. Since the industrial revolution, the CO2 concentration in the atmosphere has increased from approximately 275 parts per million (ppm) to about 378 ppm today. This has been largely the result of fossil fuel burning. It is expected that CO2 levels will continue to rise, and that by the year 2050 these levels will be approximately 550 ppm. CO2 is the raw material for photosynthesis and is known to affect plant growth and development. 2. The amount of nitrogen moving through terrestrial ecosystems has increased in the recent past. While natural "background" levels of nitrogen fixation have remained constant, human additions to the system through fertilizer production and fossil fuel use have increased dramatically. Nitrogen is a key nutrient for plant growth and plays a critical role in plant community structure and composition in many environments. 3. Biodiversity levels are falling. While the research and data are not as complete as they are for CO2 and nitrogen, data indicate that the number of species globally, is being reduced. Perhaps more important for ecosystem function, diversity levels on local to regional scales have fallen due to land use change, biotic invasion and many other drivers. While much is known about how each of these factors affects ecosystem functioning, many questions remain. There is also little data on how these issues affe
Fine Root Data at the Hubbard Brook Experimental Forest, 1998 and 2013 collections
We restored calcium to soils of a forested watershed at Hubbard Brook and measured the response of fine root biomass fourteen years after treatment. Fine root samples were collected in Watershed 1 and the Bear Brook Watershed reference forest, located to the west of Watershed 6, in 1998 (pre-Ca treatment) and in 2013. In this northern hardwood forest fine root (< 1 mm diameter) biomass declined significantly in the Ca addition treatment relative to pretreatment and reference forest conditions. The decline was greatest in the high-elevation hardwood zone of the watershed where soils are thinnest and most base poor. In that zone fine roots were distributed more shallowly after treatment than for reference conditions. We suggest that relatively higher tree C allocation to roots contributes to depressed aboveground productivity in acidified northern hardwood forest ecosystems.
Hubbard Brook Experimental Forest: Ice Storm Experiment - fine root biomass and ingrowth
Fine root (< 1mm diameter) biomass and fine root growth were measured in the ISE plots to test the hypothesis that ice damage to the canopy would cause a reduction in root production. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
Fine root production and mortality from minirhizotrons at the Hubbard Brook Experimental Forest
This data set reports observations of fine root growth, mortality and lifespan in the mature forest. The lifespan data can be combined with fine root biomass data to estimate fine root production in the forests (Fahey et al. 2005). This data set was from reference plots for a snow manipulation experiment and the results are summarized in Tierney et al. (2001). These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
Fungal root endophytes colonization of moist meadow forbs in 2017 at Niwot Ridge LTER site
Fungal root endophytes play an important role in plant nutrition, helping plants acquire nutrients in exchange for photosynthates. We sought to characterize the progression of root colonization by arbuscular mycorrhizal fungi (AMF), dark septate endophytes (DSE), and fine root endophytes (FRE) over an alpine growing season, and to understand the role of the host plant and environment in driving colonization levels. We sampled four forbs on a regular schedule from June 26th – September 11th from a moist meadow (3535 m.a.s.l) on Niwot Ridge, Rocky Mountain Front Range, Colorado, USA. We quantified the degree of root colonization by storage structures, exchange structures, and hyphae of all three groups of fungi. AMF and FRE percent colonization fluctuated significantly over time, while DSE did not. All AMF structures changed over time, and the degree of change in vesicles differed by plant species. FRE hyphae, AMF arbuscules and AMF vesicles peaked late in the season as plants produced seeds. AMF hyphae levels started high, decreased, and then increased within 20 days, highlighting the dynamic nature of plant-fungal interactions. Overall, our results show that AMF and FRE, not DSE, root colonization rapidly changes over the course of a growing season and these changes are driven by plant phenology and seasonal changes in the environment.
Litter and root decomposition data for Saddle, 1993 - 1994.
Plant tissues, foliage, and roots were collected from Niwot Ridge tundra species and composited into separate 2-gm samples. Foliage was placed in 10x20 cm litter bags with a 2mm^2 mesh to allow entry of invertebrates. Root tissues were placed in 10x20 cm^2 polyester fabric bags to prevent loss of fine root particulates. The foliage litter bags were placed on the tundra surface and secured by 10-penny nails. Root bags were buried in slits 15 cm deep. Each of the 18 1-m^2 research plots, consisted of 2 rows of 5 surface litterbags each. The upper row (with respect to slope) served as the control. The lower row was treated with ammonium nitrate at a rate of 20 g per m^2. Nitrogen will be applied at 3 monthly intervals during each of the growing seasons for the duration of the study. Litter bags (1 surface and 1 buried from each control and treatment) were collected from each plot on 18 September 1993. Additional collections were scheduled to be made in spring and fall of 1994 and spring of 1995. The samples were to be analyzed for changes in total mass, N concentration, and variation in C fractions.
SGS-LTER Long-term Seasonal Root Biomass on the Central Plains Experimental Range, Nunn, Colorado, USA 1985-2007, ARS Study Number 3
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. The belowground system in arid and semiarid regions can be of relatively greater importance than in more mesic systems because plant competition is most often for soil water rather than for light in aboveground canopies. Belowground plant biomass in the shortgrass steppe represents approximately 80% of the total. These data, entitled Long-Term Seasonal Root Biomass, were obtained in section 21 of the Central Plains Experimental Range from 1985-2008 in conjunction with a 14C labeling experiment designed to test isotope methods of estimating root production. Paired plots for each of eight replicate 14C labeled plots were established and cored on average six times per year over 13 years (five cores each plot each date as above). There were two primary objectives for collecting these data, 1) to compare estimates of root production (or belowground net primary production - BNPP) obtained using the sequential coring of biomass methods with various isotope, minirhizotron, ingrowth, and other methods, and 2) to examine long-term controls on the temporal dynamics of root biomass. This shortgrass steppe LTER site is the only place we are aware of that has compared most methods of estimating BNPP, including sequential coring, ingrowth cores, and ingrowth donuts, 14C pulse-isotop
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.