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350
datasets available to search
ShareScore release 0.9.0
Dataset results
350 results for “Ribosome profiling”
Ribo-seq (Ribosome profiling) analyses in human multiple myeloma cells
GEO Series GSE155917. Homo sapiens. 2 samples. Type: Other.
Integrated transcriptome and Ribosome Profiling analyses elucidate the liver response of rainbow trout (Oncorhynchus mykiss) to heat stress
GEO Series GSE262612. Oncorhynchus mykiss. 6 samples. Type: Expression profiling by high throughput sequencing.
Gene and protein sequence features augment HLA class I ligand predictions (ribosome profiling)
GEO Series GSE210998. Homo sapiens. 6 samples. Type: Other.
Ribosomal profiling of adipocytes
GEO Series GSE103617. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing; Other.
Charged tRNA profiling of mcf10a, HCC1806 cells, polysome profiling, RNA-Seq and Ribo-Seq in 4T07 cells upon LARS knockdown by shRNA, and RNA-Seq of ribosome-associated RNAs in Lars depleted PyMT tumo
GEO Series GSE176130. Homo sapiens; Mus musculus. 43 samples. Type: Expression profiling by high throughput sequencing; Other.
Whole transcriptome profiles and ribosome profiling of thapsigargin- and tunicamycin-treated LN308 cells
GEO Series GSE129757. Homo sapiens. 22 samples. Type: Expression profiling by high throughput sequencing; Other.
Ribosome profiling RNA sequencing in zebrafish embryos
GEO Series GSE169168. Danio rerio. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
High throughput ribosome profiling of E. coli expressing a library of heterologous proteins
GEO Series GSE134324. Escherichia coli. 94 samples. Type: Other.
Ribosome profiling of WT strain in Neurospora crass
GEO Series GSE245041. Neurospora crassa. 1 samples. Type: Other.
Ribosome profiling of NIH-3T3 cells infected with MCMV
GEO Series GSE102375. Mus musculus. 4 samples. Type: Other.
Ribosomal profiling of WT and mORF4/NBDY KO hearts [WT_vs_mORF4-NBDYKO_RNAseq]
GEO Series GSE155133. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Profiling of terminating ribosomes reveals translational control at stop codons
GEO Series GSE270879. Mus musculus; Homo sapiens. 27 samples. Type: Expression profiling by high throughput sequencing.
Ribosomal profiling of CRISPR edited and parental CHL-1 cell line
GEO Series GSE71763. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing; Other.
Anatomy of footprint extension in ribosome profiling reveals translational landscape mediated by S1 protein in bacteria
GEO Series GSE155243. Escherichia coli str. K-12 substr. MG1655. 25 samples. Type: Expression profiling by high throughput sequencing; Other; Non-coding RNA profiling by high throughput sequencing.
Ribosome profiling of wild-type and NSUN2 knockout flies
GEO Series GSE160564. Drosophila melanogaster. 4 samples. Type: Other.
Ribosome profiling of lncRNA-derived sORFs in radiosensitive and radioresistant HNSCCs
GEO Series GSE217641. Homo sapiens. 6 samples. Type: Other.
HEK293T Mtr4-KD and Control Ribo-Seq Reads for Ribosome Profiling
<p>Ribo-seq reads from Mtr4-knockdown and siRNA control cells used for ribosome profiling under Mtr4-depleted conditions.</p> <p>Cell line: HEK293T</p> <p>Transfection: siRNA, 72 hours</p> <p>Cells were lysed with cycloheximide lysis buffer, ribosomes were isolated by Ambion RNaseI digestion of unprotected RNA followed by sucrose gradient fractionation. Footprints were obtained by TRIZOL-chloroform extraction from ribosome fractions followed by urea-PAGE gel extraction. Libraries were made using the NEBNext Small RNA Library Prep Kit and rRNA fragments were depleted with custom biotinylated oligos.</p> <p>Sequencing was performed using an Illumina NextSeq 500 for 400 million single-end reads.</p> <p>Reads were converted into FASTQ format by Illumina BaseSpace. Adapters were removed by CutAdapt, remaining rRNA reads were removed by Bowtie2 alignment vs published rRNA sequences.</p>
Role of the STAR proteins in early mammalian development [Ribosome profiling]
GEO Series GSE153799. Mus musculus. 18 samples. Type: Other.
Ribosome profiling in wild-type and APOBEC1-deficient BMDMs
GEO Series GSE97286. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing; Other.
Cell-type-specific gene expression profiling using ribosome affinity purification
GEO Series GSE89993. Drosophila melanogaster. 12 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.