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3,505 results for “completive”
BLASTDB NCBI GeneBank viruses complete genomes 2023/01/01
<p>Database: NCBI GeneBank Viruses Complete genomes 2023_01_01<br> 86,641 sequences; 2,391,589,518 total bases<br> Date: Jan 1, 2023 4:32 PM<br> BLASTDB Version: 5</p> <p> </p>
Benefits and limitations of environmental magnetism for completing citizen science on air quality: a case study in a street canyon.
<p>Inside a street canyon in Montpellier (France) a total of 72 deposimeters were deployed in 29 households for a period of 3 months to measure local air quality. This street canyon was chosen because dwellers were already mobilized against the street traffic, and because they were in conflict on this issue with policy makers. The project aimed to include all the stakeholders through co-construction. The closure of the street during the metrological campaign and the absence of agreement curbed their involvement and motivation. However, the feedbacks from the citizen partners promote the fact that this study supported their claims and brought them a deeper understanding on the micro-scale air quality monitoring. Indeed, it is increasingly difficult for citizens, who seemed specifically interested in what is happening right outside their front door, to understand this measure with the emergence of ever more low-cost sensors. For that reason, we examined the citizen’s degree of confidence in magnetic monitoring of air quality and how can this technique be useful in their claims. The results show that magnetism can be a measurement technique favorable to citizen participation because it provides a large amount of data at the micro-scale of the street level, while the data from the certified associations for monitoring air quality requires a spatial interpolation to map variations on a neighborhood scale. In this study, we proposed a magnetic air quality index to standardize and democratize the magnetic monitoring of air quality to facilitate the dialogue with all stakeholders.</p>
Text-fig. 17. Scanning electron microscope (SEM) images of fruits of Serialis communis (a) and Serialis crassitesta (b); Catefica locality, Portugal. a) Oblique lateral view of fruit showing three laterally coherent seeds from which the fruit wall has been almost completely lost showing the prominent micropylar region; b) Oblique lateral view of fruit containing three or four laterally coherent seeds with their micropylar regions oriented to the left. Specimens, Catefica MM92-P0167 (a), Catefica MM92-P0169 (b). Scale bars = 300 Μm (a, b). in The Early Cretaceous Mesofossil Flora Of Catefica, Portugal: Angiosperms
Text-fig. 17. Scanning electron microscope (SEM) images of fruits of Serialis communis (a) and Serialis crassitesta (b); Catefica locality, Portugal. a) Oblique lateral view of fruit showing three laterally coherent seeds from which the fruit wall has been almost completely lost showing the prominent micropylar region; b) Oblique lateral view of fruit containing three or four laterally coherent seeds with their micropylar regions oriented to the left. Specimens, Catefica MM92-P0167 (a), Catefica MM92-P0169 (b). Scale bars = 300 Μm (a, b).
Text-fig. 18. Scanning electron microscope (SEM) images of fragmentary flower of Catanthus dolichostemon (a, b) and flower of Saportanthus parvus (c, d); Catefica locality, Portugal. a, b) Fragment of flower bud showing bulky tepals (te) and fleshy stamens (st) in ventral (a) and lateral (b) views; note the long stamen base and small anther with extrorse anther dehiscence (arrows); c, d) Flower in lateral (c) and oblique apical (d) views showing inferior ovary and eight bulky tepals almost completely enclosing the stamens and styles. Specimens, Catefica MM92-P0159 (a, b), Catefica MM285-P0331 (c, d). Scale bars = 300 Μm (a–d). in The Early Cretaceous Mesofossil Flora Of Catefica, Portugal: Angiosperms
Text-fig. 18. Scanning electron microscope (SEM) images of fragmentary flower of Catanthus dolichostemon (a, b) and flower of Saportanthus parvus (c, d); Catefica locality, Portugal. a, b) Fragment of flower bud showing bulky tepals (te) and fleshy stamens (st) in ventral (a) and lateral (b) views; note the long stamen base and small anther with extrorse anther dehiscence (arrows); c, d) Flower in lateral (c) and oblique apical (d) views showing inferior ovary and eight bulky tepals almost completely enclosing the stamens and styles. Specimens, Catefica MM92-P0159 (a, b), Catefica MM285-P0331 (c, d). Scale bars = 300 Μm (a–d).
A complete picture of cation dynamics in hybrid perovskite materials from solid-state NMR spectroscopy
<p> Raw, collated NMR and XRD data for the article "A Complete Picture of Cation Dynamics in Hybrid Perovskite Materials from Solid-State NMR Spectroscopy". For further details see the readme.txt file.</p>
Experimental Electrical Impedance Tomography Data Set Using the Spectra Bioimpedance and EIT Complete Kit
<p><strong>Abstract</strong></p> <p>The amount of open-source EIT measurement data is low. This data set concerns the acquisition and processing of different measurement data using the SpectraEIT-Kit as well as information about the deposited files.</p> <p><strong>Aknoelegenment</strong><br> Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – SFB 1270/2 - 299150580.</p>
Structure of the complete review matrix developed in the context of the "Reviewing Computational Thinking in Compulsory Education: State of Play and Practices from the Field" research study
<p>This is the structure of the complete review matrix used to analyse in-depth <strong>98 selected publications from between 2016 and 2021 </strong>in the context of the "<a href="https://publications.jrc.ec.europa.eu/repository/handle/JRC128347">Reviewing Computational Thinking in Compulsory Education: State of Play and</a> <a href="https://publications.jrc.ec.europa.eu/repository/handle/JRC128347"> Practices from the Field</a>" research study. The <a href="https://computhink2study.eu/">study </a>was designed, funded, and followed by the European Commission’s Joint Research Centre (JRC) to investigate <strong>how Computational Thinking (CT) is currently positioned within compulsory school education in Europe’s various Member States, as well as outside the EU</strong>. The study was carried out from April to December 2021 by the Institute for Educational Technology of the Italian National Research Council (CNR-ITD), together with European Schoolnet (EUN) and Vilnius University (VU).</p>
Precessing binary-black-hole numerical relativity catalogue (complete data release)
<p>This page contains the minimal data release associated with the catalogue presented in <a href="https://dcc.ligo.org/DocDB/0186/P2300054/001/catalogue.pdf">A catalogue of precessing black-hole-binary numerical-relativity simulations</a>. This catalogue contains 80 single-spin precessing black-hole-binary configurations. </p> <p>The content of the data release is described <a href="https://data.cardiffgravity.org/bam-catalogue/">here</a>, along with instructions on how to parse the data.</p>
Collective Scene Completion in Partially Observable Environments
<p>Submitted for the purpose of visually aiding paper titled Collective Scene Completion in Partially Observable Environments.</p> <p>We assume a partially observable environment where a robot swarm is deployed to explore and construct a map of the environment. The robots perform collective decision-making to reach a consensus on the observable part of the environment and use a novel collective perception framework for scene inpainting using autoencoders to predict inaccessible regions of an environment. We use the MNIST digit dataset as the projected scenes on the robots to facilitate reproducibility.</p>
FIG. 4 in First report of complete mitogenome for an Itarinae species (Orthoptera, Grylloidea) with phylogenetic analysis
FIG. 4. — Phylogeny of the superfamily Grylloidea with Bayesian inference (BI) and maximum likelihood (ML) based on PCGs + rRNA + tRNA matrix. The numbers on each node are Bayesian posterior probabilities (BPP, left) and ML bootstrap support values (MLB, right) respectively.
FIG. 3 in First report of complete mitogenome for an Itarinae species (Orthoptera, Grylloidea) with phylogenetic analysis
FIG. 3. — Predicted secondary structures of 22 tRNAs in Itara minor Chopard, 1925. Dash (–) represents Watson-Crick bonds and dot (•) represents trans Watson- Crick GU bonds.
Data from: Biochemical, structural and dynamical characterizations of the lactate dehydrogenase from Selenomonas ruminantium provide information about an intermediate evolutionary step prior to complete allosteric regulation acquisition in the super family of lactate and malate dehydrogenases.
<p>This data accompanies the paper entitled <strong><em>Biochemical, structural and dynamical characterizations of the lactate dehydrogenase from Selenomonas ruminantium provide information about an intermediate evolutionary step prior to complete allosteric regulation acquisition in the super family of lactate and malate dehydrogenases.</em></strong></p> <p>The zip archive contains the results of molecular dynamics simulations of the 2 systems investigated in the paper: <em>S. rum</em> and <em>T. mar</em> LDHs. The systems have been simulated at 315 K for <em>S. rum </em>and 340 K for <em>T. mar</em>. Final configurations of the proteins after productions are provided for all the systems in GRO Gromos87 format. Trajectories with the positions of the proteins every 100 ps are provided for all the systems in XTC gromacs format.</p>
DrugProt Complete PubMed Knowledge Graph
<p><strong>DrugProt Complete PubMed Knowledge Graph</strong></p><p><strong>Please cite if you use any DrugProt resource:</strong></p><p>Antonio Miranda-Escalada, Farrokh Mehryary, Jouni Luoma, Darryl Estrada-Zavala, Luis Gasco, Sampo Pyysalo, Alfonso Valencia, Martin Krallinger, Overview of DrugProt task at BioCreative VII: data and methods for large-scale text mining and knowledge graph generation of heterogenous chemical–protein relations, <i>Database</i>, Volume 2023, 2023, baad080</p><blockquote><p><i>@article{miranda2023overview, title={Overview of DrugProt task at BioCreative VII: data and methods for large-scale text mining and knowledge graph generation of heterogenous chemical--protein relations}, author={Miranda-Escalada, Antonio and Mehryary, Farrokh and Luoma, Jouni and Estrada-Zavala, Darryl and Gasco, Luis and Pyysalo, Sampo and Valencia, Alfonso and Krallinger, Martin}, journal={Database}, volume={2023}, pages={baad080}, year={2023}, publisher={Oxford University Press UK} }</i></p></blockquote><p><strong>Description</strong></p><p>This dataset contains a knowledge graph built from PubMed dump abstracts (December 2021). A NER system has been applied to each of the abstracts to extract mentions of type "CHEMICAL" and "GENE", as well as a RE system to detect existing relations between these mentions such as ACTIVATOR, INHIBITOR, AGONIST or PRODUCT_OF, among others (see article for a full list of relations considered).</p><p>Given the volume of the dataset, the repository is divided into 1114 folders. Each of these folders contains a chunk of PubMed abstracts, entities and relationships, divided into the following 3 files:</p><ul><li><i>abstracts.tsv</i>: Tabular file in which each line represents a pubmed document. The file has 3 columns:<ul><li>Pubmed_id: Numerical identifier of the document in PubMed</li><li>Title: Title of the document</li><li>Abstract: Abstract text.</li></ul></li><li>entities.tsv: List of the entities extracted from the abstracts. Each line represents an extracted entity, and has 5 columns:<ul><li>Pubmed_id: Numerical identifier of the document in PubMed</li><li>Mention_id: Numerical identifier of the mention in the document.</li><li>Entity_type: Type of mention. It can be CHEMICAL or GENE.</li><li>Span_ini: Index of the first character of the annotated span in the text</li><li>Span_end: Index of the first character after the annotated span.</li><li>Span: Text span of the annotation</li></ul></li><li>relations.tsv: File of existing relations between entities. Each line represents a relationship, and has the following fields:<ul><li>Pubmed_id: Numerical identifier of the document in PubMed</li><li>Relation_type: DrugProt relation type among entities/arguments.</li><li>Arg1: Mention of CHEMICAL</li><li>Arg2: Mention of GENE</li></ul></li></ul><p> </p><p><strong>Files:</strong></p><ul><li>drugprot-silver-standard-kg.zip : Folders with the files previously explained</li></ul><p> </p><p><strong>Related resources:</strong></p><ul><li><a href="https://biocreative.bioinformatics.udel.edu/tasks/biocreative-vii/track-1/">Web</a></li><li><a href="https://doi.org/10.5281/zenodo.4955410">DrugProt corpus</a></li><li><a href="https://github.com/tonifuc3m/drugprot-evaluation-library">Evaluation library</a></li><li><a href="https://codalab.lisn.upsaclay.fr/competitions/8293">Online evaluation (CodaLab)</a></li><li><a href="https://doi.org/10.5281/zenodo.4957137">Relation annotation guidelines</a></li><li><a href="https://doi.org/10.5281/zenodo.4957576">Gene and protein annotation guidelines</a></li><li><a href="https://doi.org/10.5281/zenodo.4957518">Chemicals and drugs annotation guidelines</a></li><li><a href="https://doi.org/10.5281/zenodo.5042178">FAQ</a></li><li><a href="https://doi.org/10.5281/zenodo.5119878">DrugProt Large Scale Additional SubTrack</a></li><li><a href="https://doi.org/10.5281/zenodo.5656991">DrugProt Large Scale document collection protocol</a></li><li><a href="https://doi.org/10.5281/zenodo.8246229">DrugProt Complete PubMed Knowledge Graph</a><br> </li></ul>
A Complete Water Balance of a Rain Garden
<p>A bioinfiltration rain garden was retrofitted from an existing traffic island at Villanova University in 2001. It has been monitored continuously since 2003 at a five-minute timeseries resolution and with instrumentation that would enable a water balance calculation. This twenty-year dataset allows for an in-depth analysis of the hydrologic pathways and management in the rain garden. Using physical equations and modeled data (based on real-time measurements), a balance of all influent, stored, and effluent water within the rain garden was constructed.</p> <p>The water balance data (totals of individual water balance components) of all storms used in assessing the rain garden’s performance in the study are provided in this dataset. This dataset is associated with the forthcoming publication: <em>A Complete Water Balance of a Rain Garden</em> (McGauley et al. 2023). </p>
Plane waves versus correlation-consistent basis sets: A comparison of MP2 non-covalent interaction energies in the complete basis set limit
<p>Supporting data and analysis scripts for the work</p> <p><a href="https://doi.org/10.26434/chemrxiv-2023-203z9">Plane waves versus correlation-consistent basis sets: A comparison of MP2 non-covalent interaction energies in the complete basis set limit</a></p>
CAIRT Complete Data Fusion 2D - Input/Output Dataset
<p>This package contains input/output data of tool Complete_Data_Fusion_2D (CDF_2D)(https://doi.org/10.5281/zenodo.8290163) which performs the 2D data fusion of CAIRT with IASI-NG, Sentinel 5 (S5) simulated measurements, both flying on MetOp-SG A which CAIRT will be in formation with.</p>
Photometric Completeness Modelled With Neural Networks
<p>Neural networks associated with the paper "Photometric Completeness Modelled With Neural Networks" (Harris & Speagle 2023).</p> <p>Neural networks (`nn_clf_[...].joblib`) are included for all possible parameter combinations and trained over various numbers of artificial star tests (`ngc[...].dat`). See the example notebook (`nn_example.ipynb`) for detailed explanations of the files, their contents, and some usage examples.</p>
low Cerro Gordo; StL 2, Cerro Gordo sandstone; StL 3, between Cerro Gordo and Chunchullo; StL 4, Chunchullo sandstone; StL 5, bed set between Chunchullo and Tatacoa; StL 6, Tatacoa sandstone; StL 7, bed set below Cerbatana conglomerate; StL 8, Cerbatana conglomerate; StL 9, Monkey beds; StL 10, bed set above Monkey beds; StL 12, bed set above Fish bed; StL 14, bed set below La Venta red beds; StL 15, La Venta red beds; StL 16, bed set between La Venta red beds and El Cardón red beds; StL 17, El Cardón red beds; StL 18, San Francisco sandstone; StL 19, Polonia red beds; D, reconstruction of the head of Neodolodus colombianus based on the 3D model of the almost complete skull of the specimen VPPLT 1696. Abbreviations: Fm, Formation; St m, Stratigraphic meter. Reconstruction of N. colombianus made by Tatsuya Shimura. in New remains of Neotropical bunodont litopterns and the systematics of Megadolodinae (Mammalia: Litopterna)
low Cerro Gordo; StL 2, Cerro Gordo sandstone; StL 3, between Cerro Gordo and Chunchullo; StL 4, Chunchullo sandstone; StL 5, bed set between Chunchullo and Tatacoa; StL 6, Tatacoa sandstone; StL 7, bed set below Cerbatana conglomerate; StL 8, Cerbatana conglomerate; StL 9, Monkey beds; StL 10, bed set above Monkey beds; StL 12, bed set above Fish bed; StL 14, bed set below La Venta red beds; StL 15, La Venta red beds; StL 16, bed set between La Venta red beds and El Cardón red beds; StL 17, El Cardón red beds; StL 18, San Francisco sandstone; StL 19, Polonia red beds; D, reconstruction of the head of Neodolodus colombianus based on the 3D model of the almost complete skull of the specimen VPPLT 1696. Abbreviations: Fm, Formation; St m, Stratigraphic meter. Reconstruction of N. colombianus made by Tatsuya Shimura.
DESI Complete Calibration of the Color-Redshift Relation (DC3R2): Results from early DESI data
<p>The data and python code used to reproduce the figures in the paper of the same name, J. McCullough et al.</p>
Image stacks for full-body transcription factor expression atlas with completely resolved cell identities in C. elegans
<p>Each image stack presented as zip file. Once decompressed, each folder contain '.ano' linker file, straightening C. elegans L1 images file, the segmentation mask image file and the cell annotation file. The image files are stored in Peng Hanchuan RAW/TIFF format, and the cell annotation file is stored in simple comma separated values format. To visualize the image stack data, drag the '.ano' linker file to VANO interface. </p> <p>vano_win32_1.741.zip contains VANO for worm visualization.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.