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Image Data sets for use in Heritage Science
<p>The following data sets were collected to support the potential uses of opensource data in the context of digital humanities and heritage sciences. </p> <p><a href="https://doi.org/10.5281/zenodo.7292917">Photographs</a> </p> <p><a href="https://doi.org/10.5281/zenodo.7292961">X-Ray Fluorescence</a> </p> <p><a href="https://doi.org/10.5281/zenodo.7322908">Hyperspectral Imaging</a> </p> <p><a href="https://doi.org/10.5281/zenodo.7292714">Multispectral Imaging</a></p> <p> </p> <p>This proposed experiment is conducted by the UCL Institute for Sustainable Heritage in collaboration with the Centre for Digital Humanities. Imaging methods including Photography, Multispectral Imaging, Hyperspectral Imaging and Xray Fluorescence Mapping have been collected along with the complete readout metadata of the instrumentation.</p> <p>We have collected this as an example of typical, unprocessed imaging datasets that would be found in standard image conditions. This data is not optimized, nor do we claim it to be perfect quality, our aim is to provide users with access to a range of imaging data sets. We have included the data with minimum processing, as it is read straight from our systems, with the accompanying metadata provided from capture alone.</p> <p>We hope that you find the data helpful, and we welcome you to use the data in any way you wish, for all and any analysis development purposes. For us to build upon this research, we ask that in return you would be willing to share in some regard your experiences in using open-source data, using our data, successes and issues. </p> <p>If you would be willing to engage with us in this endeavor, please feel free to contact us so that we may be able to follow up with you. </p> <p>E: <a href="mailto:molly.fort.21@ucl.ac.uk">molly.fort.21@ucl.ac.uk</a> </p> <p>Object Paradata; </p> <ul> <li><strong>Postcard – c. Early 1900's </strong></li> <li><strong>Language – Eng. </strong></li> <li><strong>Materials – colour print on card, metallic leafing. </strong></li> <li><strong>Front transcription - </strong></li> <li><strong> ‘Greetings’ </strong></li> <li><strong> ‘May your Birthday bring you Peace & perfect Happiness, Golden hopes & Love of Friends, And every Happiness this world can send.’ </strong></li> <li><strong>Object Dimensions – 138mm X 88mm </strong></li> </ul> <p>The postcard is an item of ephemera donated to the UCLDH Digitisation Suite by Prof Melissa Terras, for teaching and training purposes in 2015.</p>
Data sets of research paper "Towards SHM of medium-rise buildings in non-seismic areas" (2021)
<p>Accompanying data sets to the research article:</p> <p>Gaile L., Sliseris J., Ratnika L. Towards SHM of medium-rise buildings in non-seismic areas (2021) International Conference on Structural Health Monitoring of Intelligent Infrastructure: Transferring Research into Practice, SHMII, 2021-June, pp. 1023 - 1030.</p> <p>https://www.scopus.com/inward/record.uri?eid=2-s2.0-85130738547&partnerID=40&md5=d1aaeceae696dadebb7862d4e556abd2</p>
data set, source of https://doi.org/10.1016/j.foodcont.2021.108062
<p>data source of "Pierrine Didier, Christophe Nguyen-The, Lydia Martens, Mike Foden, Loredana Dumitrascu, Augustin Octavian Mihalache, Anca Ioana Nicolau, Silje Elisabeth Skuland, Monica Truninger, Luís Junqueira, Isabelle Maitre,<br> Washing hands and risk of cross-contamination during chicken preparation among domestic practitioners in five European countries,<br> Food Control, Volume 127, 2021, 108062, ISSN 0956-7135, https://doi.org/10.1016/j.foodcont.2021.108062." </p> <p>SafeConsumeQuali_ParticipantsDescription.csv includes the description of participants to the SafeConsume qualitative survey.</p> <p>SafeconsumeQuali_WashingHandsDuration.csv includes the duration of washning hands in the SafeConsume qualitative survey.</p> <p>SafeConsumeQuali_WashHands.csv includes the different occasions of washning hands in the SafeConsume qualitative survey.</p> <p>SafeConsumeSurvey_extract_ATTR20200527.csv includes the list of variables of the SafeConsume quantitative survey used in the article .</p> <p>SafeConsumeSurvey_extract_DATA20200527.csv includes the data of the SafeConsume quantitative survey used in the article</p>
mouse scRNA data set objects
<p>Combined and converted scRNA data from http://tome.gs.washington.edu/ (Qui et al. 2022), see a detailed description of the study here: https://www.nature.com/articles/s41588-022-01018-x</p> <p>Data were downloaded from http://tome.gs.washington.edu/ as R rds files, combined into a single Seurat object and converted into loom and AnnData (h5ad) files to be able to analyse with e.g. python scanpy package.</p> <p>If you use this data, please cite Mohammed et al. 2017, Cheng et al. 2019, Pijuan-Sala et al. 2019, Cao et al. 2019 and Qui et al. 2022.</p>
Data set for Water Affordability in the United States (Cardoso and Wichman, 2022)
<p><strong>Author Information</strong><br> - Diego S. Cardoso, Department of Agricultural Economics - Purdue University<br> - Casey J. Wichman, School of Economics - Georgia Institute of Technology and Resources for the Future</p> <p><strong>Corresponding Author:</strong> Casey J. Wichman: wichman@gatech.edu</p> <p><strong>Period of data collection:</strong> 2017--2018</p> <p><strong>License: </strong>This data set can be used under terms of the <a href="https://creativecommons.org/licenses/by-sa/4.0/">Creative Commons Attribution-ShareAlike 4.0 International license</a>. </p> <p><strong>Recommended citation for the research paper</strong> <br> Cardoso, D. S., & Wichman, C. J. (2022). Water affordability in the United States. Water Resources Research, 58, e2022WR032206. https://doi.org/10.1029/2022WR032206</p> <p><strong>Recommended citation for the data:</strong> <br> Cardoso, Diego S., & Wichman, Casey J. (2022). Data set for Water Affordability in the United States [Data set]. In Water Resources Research (v0.1, Vol. 58, Numbers e2022WR032206). Zenodo. https://doi.org/10.5281/zenodo.6991563</p> <p> </p> <p> </p> <p>Please see the README.txt file for the data dictionary and additional information.</p>
Daily time series of spatially enhanced relative humidity for Europe at 1000 m resolution (Set 5: 2020 - 2021) derived from ERA5-Land data
<p>Overview:<br> ERA5-Land is a reanalysis dataset providing a consistent view of the evolution of land variables over several decades at an enhanced resolution compared to ERA5. ERA5-Land has been produced by replaying the land component of the ECMWF ERA5 climate reanalysis. Reanalysis combines model data with observations from across the world into a globally complete and consistent dataset using the laws of physics. Reanalysis produces data that goes several decades back in time, providing an accurate description of the climate of the past.</p> <p>Processing steps:<br> The original hourly ERA5-Land air temperature 2 m above ground and dewpoint temperature 2 m data has been spatially enhanced from 0.1 degree to 30 arc seconds (approx. 1000 m) spatial resolution by image fusion with CHELSA data (V1.2) (<a href="https://chelsa-climate.org/">https://chelsa-climate.org/</a>). For each day we used the corresponding monthly long-term average of CHELSA. The aim was to use the fine spatial detail of CHELSA and at the same time preserve the general regional pattern and fine temporal detail of ERA5-Land. The steps included aggregation and enhancement, specifically:<br> 1. spatially aggregate CHELSA to the resolution of ERA5-Land<br> 2. calculate difference of ERA5-Land - aggregated CHELSA<br> 3. interpolate differences with a Gaussian filter to 30 arc seconds<br> 4. add the interpolated differences to CHELSA</p> <p>Subsequently, the temperature time series have been aggregated on a daily basis. From these, daily relative humidity has been calculated for the time period 01/2000 - 07/2021.</p> <p>Relative humidity (rh2m) has been calculated from air temperature 2 m above ground (Ta) and dewpoint temperature 2 m above ground (Td) using the formula for saturated water pressure from Wright (1997):</p> <p><code>maximum water pressure = 611.21 * exp(17.502 * Ta / (240.97 + Ta))</code></p> <p><code>actual water pressure = 611.21 * exp(17.502 * Td / (240.97 + Td))</code></p> <p><code>relative humidity = actual water pressure / maximum water pressure</code></p> <p>Data provided is the daily averages of relative humidity. This set provides data for the years 2020 - 2021. For other time periods, please see further linked data sets.</p> <p>Resultant values have been converted to represent percent * 10, thus covering a theoretical range of [0, 1000].</p> <p>The data have been reprojected to EU LAEA.</p> <p>File naming scheme (YYYY = year; MM = month; DD = day):<br> <code>ERA5_land_rh2m_avg_daily_YYYYMMDD.tif</code></p> <p>Projection + EPSG code:<br> EU LAEA (EPSG: 3035)</p> <p>Spatial extent:<br> north: 6874000<br> south: -485000<br> west: 869000<br> east: 8712000</p> <p>Spatial resolution:<br> 1000 m</p> <p>Temporal resolution:<br> Daily</p> <p>Pixel values:<br> Percent * 10 (scaled to Integer; example: value 738 = 73.8 %)</p> <p>Software used:<br> GDAL 3.2.2 and GRASS GIS 8.0.0</p> <p>Original ERA5-Land dataset license:<br> <a href="https://apps.ecmwf.int/datasets/licences/copernicus/">https://apps.ecmwf.int/datasets/licences/copernicus/</a></p> <p>CHELSA climatologies (V1.2):<br> Data used: Karger D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E, Linder, H.P., Kessler, M. (2018): Data from: Climatologies at high resolution for the earth's land surface areas. Dryad digital repository. <a href="http://dx.doi.org/doi:10.5061/dryad.kd1d4">http://dx.doi.org/doi:10.5061/dryad.kd1d4</a><br> Original peer-reviewed publication: Karger, D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E., Linder, P., Kessler, M. (2017): Climatologies at high resolution for the Earth land surface areas. Scientific Data. 4 170122. <a href="https://doi.org/10.1038/sdata.2017.122">https://doi.org/10.1038/sdata.2017.122</a></p> <p>Processed by:<br> mundialis GmbH & Co. KG, Germany (<a href="https://www.mundialis.de/">https://www.mundialis.de/</a>)</p> <p>Reference: Wright, J.M. (1997): Federal meteorological handbook no. 3 (FCM-H3-1997). Office of Federal Coordinator for Meteorological Services and Supporting Research. Washington, DC</p> <p>Data is also available in Latitude-Longitude/WGS84 (EPSG: 4326) projection: <a href="http://https://doi.org/10.5281/zenodo.6344125">https://doi.org/10.5281/zenodo.6344125</a></p>
Daily time series of spatially enhanced relative humidity for Europe at 1000 m resolution (Set 3: 2010 - 2014) derived from ERA5-Land data
<p>Overview:<br> ERA5-Land is a reanalysis dataset providing a consistent view of the evolution of land variables over several decades at an enhanced resolution compared to ERA5. ERA5-Land has been produced by replaying the land component of the ECMWF ERA5 climate reanalysis. Reanalysis combines model data with observations from across the world into a globally complete and consistent dataset using the laws of physics. Reanalysis produces data that goes several decades back in time, providing an accurate description of the climate of the past.</p> <p>Processing steps:<br> The original hourly ERA5-Land air temperature 2 m above ground and dewpoint temperature 2 m data has been spatially enhanced from 0.1 degree to 30 arc seconds (approx. 1000 m) spatial resolution by image fusion with CHELSA data (V1.2) (<a href="https://chelsa-climate.org/">https://chelsa-climate.org/</a>). For each day we used the corresponding monthly long-term average of CHELSA. The aim was to use the fine spatial detail of CHELSA and at the same time preserve the general regional pattern and fine temporal detail of ERA5-Land. The steps included aggregation and enhancement, specifically:<br> 1. spatially aggregate CHELSA to the resolution of ERA5-Land<br> 2. calculate difference of ERA5-Land - aggregated CHELSA<br> 3. interpolate differences with a Gaussian filter to 30 arc seconds<br> 4. add the interpolated differences to CHELSA</p> <p>Subsequently, the temperature time series have been aggregated on a daily basis. From these, daily relative humidity has been calculated for the time period 01/2000 - 07/2021.</p> <p>Relative humidity (rh2m) has been calculated from air temperature 2 m above ground (Ta) and dewpoint temperature 2 m above ground (Td) using the formula for saturated water pressure from Wright (1997):</p> <p><code>maximum water pressure = 611.21 * exp(17.502 * Ta / (240.97 + Ta))</code></p> <p><code>actual water pressure = 611.21 * exp(17.502 * Td / (240.97 + Td))</code></p> <p><code>relative humidity = actual water pressure / maximum water pressure</code></p> <p>Data provided is the daily averages of relative humidity. This set provides data for the years 2010 - 2014. For other time periods, please see further linked data sets.</p> <p>Resultant values have been converted to represent percent * 10, thus covering a theoretical range of [0, 1000].</p> <p>The data have been reprojected to EU LAEA.</p> <p>File naming scheme (YYYY = year; MM = month; DD = day):<br> <code>ERA5_land_rh2m_avg_daily_YYYYMMDD.tif</code></p> <p>Projection + EPSG code:<br> EU LAEA (EPSG: 3035)</p> <p>Spatial extent:<br> north: 6874000<br> south: -485000<br> west: 869000<br> east: 8712000</p> <p>Spatial resolution:<br> 1000 m</p> <p>Temporal resolution:<br> Daily</p> <p>Pixel values:<br> Percent * 10 (scaled to Integer; example: value 738 = 73.8 %)</p> <p>Software used:<br> GDAL 3.2.2 and GRASS GIS 8.0.0</p> <p>Original ERA5-Land dataset license:<br> <a href="https://apps.ecmwf.int/datasets/licences/copernicus/">https://apps.ecmwf.int/datasets/licences/copernicus/</a></p> <p>CHELSA climatologies (V1.2):<br> Data used: Karger D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E, Linder, H.P., Kessler, M. (2018): Data from: Climatologies at high resolution for the earth's land surface areas. Dryad digital repository. <a href="http://dx.doi.org/doi:10.5061/dryad.kd1d4">http://dx.doi.org/doi:10.5061/dryad.kd1d4</a><br> Original peer-reviewed publication: Karger, D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E., Linder, P., Kessler, M. (2017): Climatologies at high resolution for the Earth land surface areas. Scientific Data. 4 170122. <a href="https://doi.org/10.1038/sdata.2017.122">https://doi.org/10.1038/sdata.2017.122</a></p> <p>Processed by:<br> mundialis GmbH & Co. KG, Germany (<a href="https://www.mundialis.de/">https://www.mundialis.de/</a>)</p> <p>Reference: Wright, J.M. (1997): Federal meteorological handbook no. 3 (FCM-H3-1997). Office of Federal Coordinator for Meteorological Services and Supporting Research. Washington, DC</p> <p>Data is also available in Latitude-Longitude/WGS84 (EPSG: 4326) projection: <a href="http://https://doi.org/10.5281/zenodo.6344012">https://doi.org/10.5281/zenodo.6344012</a></p>
Daily time series of spatially enhanced relative humidity for Europe at 1000 m resolution (Set 2: 2005 - 2009) derived from ERA5-Land data
<p>Overview:<br> ERA5-Land is a reanalysis dataset providing a consistent view of the evolution of land variables over several decades at an enhanced resolution compared to ERA5. ERA5-Land has been produced by replaying the land component of the ECMWF ERA5 climate reanalysis. Reanalysis combines model data with observations from across the world into a globally complete and consistent dataset using the laws of physics. Reanalysis produces data that goes several decades back in time, providing an accurate description of the climate of the past.</p> <p>Processing steps:<br> The original hourly ERA5-Land air temperature 2 m above ground and dewpoint temperature 2 m data has been spatially enhanced from 0.1 degree to 30 arc seconds (approx. 1000 m) spatial resolution by image fusion with CHELSA data (V1.2) (<a href="https://chelsa-climate.org/">https://chelsa-climate.org/</a>). For each day we used the corresponding monthly long-term average of CHELSA. The aim was to use the fine spatial detail of CHELSA and at the same time preserve the general regional pattern and fine temporal detail of ERA5-Land. The steps included aggregation and enhancement, specifically:<br> 1. spatially aggregate CHELSA to the resolution of ERA5-Land<br> 2. calculate difference of ERA5-Land - aggregated CHELSA<br> 3. interpolate differences with a Gaussian filter to 30 arc seconds<br> 4. add the interpolated differences to CHELSA</p> <p>Subsequently, the temperature time series have been aggregated on a daily basis. From these, daily relative humidity has been calculated for the time period 01/2000 - 07/2021.</p> <p>Relative humidity (rh2m) has been calculated from air temperature 2 m above ground (Ta) and dewpoint temperature 2 m above ground (Td) using the formula for saturated water pressure from Wright (1997):</p> <p><code>maximum water pressure = 611.21 * exp(17.502 * Ta / (240.97 + Ta))</code></p> <p><code>actual water pressure = 611.21 * exp(17.502 * Td / (240.97 + Td))</code></p> <p><code>relative humidity = actual water pressure / maximum water pressure</code></p> <p>Data provided is the daily averages of relative humidity. This set provides data for the years 2005 - 2009. For other time periods, please see further linked data sets.</p> <p>Resultant values have been converted to represent percent * 10, thus covering a theoretical range of [0, 1000].</p> <p>The data have been reprojected to EU LAEA.</p> <p>File naming scheme (YYYY = year; MM = month; DD = day):<br> <code>ERA5_land_rh2m_avg_daily_YYYYMMDD.tif</code></p> <p>Projection + EPSG code:<br> EU LAEA (EPSG: 3035)</p> <p>Spatial extent:<br> north: 6874000<br> south: -485000<br> west: 869000<br> east: 8712000</p> <p>Spatial resolution:<br> 1000 m</p> <p>Temporal resolution:<br> Daily</p> <p>Pixel values:<br> Percent * 10 (scaled to Integer; example: value 738 = 73.8 %)</p> <p>Software used:<br> GDAL 3.2.2 and GRASS GIS 8.0.0</p> <p>Original ERA5-Land dataset license:<br> <a href="https://apps.ecmwf.int/datasets/licences/copernicus/">https://apps.ecmwf.int/datasets/licences/copernicus/</a></p> <p>CHELSA climatologies (V1.2):<br> Data used: Karger D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E, Linder, H.P., Kessler, M. (2018): Data from: Climatologies at high resolution for the earth's land surface areas. Dryad digital repository. <a href="http://dx.doi.org/doi:10.5061/dryad.kd1d4">http://dx.doi.org/doi:10.5061/dryad.kd1d4</a><br> Original peer-reviewed publication: Karger, D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E., Linder, P., Kessler, M. (2017): Climatologies at high resolution for the Earth land surface areas. Scientific Data. 4 170122. <a href="https://doi.org/10.1038/sdata.2017.122">https://doi.org/10.1038/sdata.2017.122</a></p> <p>Processed by:<br> mundialis GmbH & Co. KG, Germany (<a href="https://www.mundialis.de/">https://www.mundialis.de/</a>)</p> <p>Reference: Wright, J.M. (1997): Federal meteorological handbook no. 3 (FCM-H3-1997). Office of Federal Coordinator for Meteorological Services and Supporting Research. Washington, DC</p> <p>Data is also available in Latitude-Longitude/WGS84 (EPSG: 4326) projection: <a href="http://https://doi.org/10.5281/zenodo.6342822">https://doi.org/10.5281/zenodo.6342822</a></p>
Daily time series of spatially enhanced relative humidity for Europe at 1000 m resolution (Set 1: 2000 - 2004) derived from ERA5-Land data
<p>Overview:<br> ERA5-Land is a reanalysis dataset providing a consistent view of the evolution of land variables over several decades at an enhanced resolution compared to ERA5. ERA5-Land has been produced by replaying the land component of the ECMWF ERA5 climate reanalysis. Reanalysis combines model data with observations from across the world into a globally complete and consistent dataset using the laws of physics. Reanalysis produces data that goes several decades back in time, providing an accurate description of the climate of the past.</p> <p>Processing steps:<br> The original hourly ERA5-Land air temperature 2 m above ground and dewpoint temperature 2 m data has been spatially enhanced from 0.1 degree to 30 arc seconds (approx. 1000 m) spatial resolution by image fusion with CHELSA data (V1.2) (<a href="https://chelsa-climate.org/">https://chelsa-climate.org/</a>). For each day we used the corresponding monthly long-term average of CHELSA. The aim was to use the fine spatial detail of CHELSA and at the same time preserve the general regional pattern and fine temporal detail of ERA5-Land. The steps included aggregation and enhancement, specifically:<br> 1. spatially aggregate CHELSA to the resolution of ERA5-Land<br> 2. calculate difference of ERA5-Land - aggregated CHELSA<br> 3. interpolate differences with a Gaussian filter to 30 arc seconds<br> 4. add the interpolated differences to CHELSA</p> <p>Subsequently, the temperature time series have been aggregated on a daily basis. From these, daily relative humidity has been calculated for the time period 01/2000 - 07/2021.</p> <p>Relative humidity (rh2m) has been calculated from air temperature 2 m above ground (Ta) and dewpoint temperature 2 m above ground (Td) using the formula for saturated water pressure from Wright (1997):</p> <p><code>maximum water pressure = 611.21 * exp(17.502 * Ta / (240.97 + Ta))</code></p> <p><code>actual water pressure = 611.21 * exp(17.502 * Td / (240.97 + Td))</code></p> <p><code>relative humidity = actual water pressure / maximum water pressure</code></p> <p>Data provided is the daily averages of relative humidity. This set provides data for the years 2000 - 2004. For other time periods, please see further linked data sets.</p> <p>Resultant values have been converted to represent percent * 10, thus covering a theoretical range of [0, 1000].</p> <p>The data have been reprojected to EU LAEA.</p> <p>File naming scheme (YYYY = year; MM = month; DD = day):<br> <code>ERA5_land_rh2m_avg_daily_YYYYMMDD.tif</code></p> <p>Projection + EPSG code:<br> EU LAEA (EPSG: 3035)</p> <p>Spatial extent:<br> north: 6874000<br> south: -485000<br> west: 869000<br> east: 8712000</p> <p>Spatial resolution:<br> 1000 m</p> <p>Temporal resolution:<br> Daily</p> <p>Pixel values:<br> Percent * 10 (scaled to Integer; example: value 738 = 73.8 %)</p> <p>Software used:<br> GDAL 3.2.2 and GRASS GIS 8.0.0</p> <p>Original ERA5-Land dataset license:<br> <a href="https://apps.ecmwf.int/datasets/licences/copernicus/">https://apps.ecmwf.int/datasets/licences/copernicus/</a></p> <p>CHELSA climatologies (V1.2):<br> Data used: Karger D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E, Linder, H.P., Kessler, M. (2018): Data from: Climatologies at high resolution for the earth's land surface areas. Dryad digital repository. <a href="http://dx.doi.org/doi:10.5061/dryad.kd1d4">http://dx.doi.org/doi:10.5061/dryad.kd1d4</a><br> Original peer-reviewed publication: Karger, D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E., Linder, P., Kessler, M. (2017): Climatologies at high resolution for the Earth land surface areas. Scientific Data. 4 170122. <a href="https://doi.org/10.1038/sdata.2017.122">https://doi.org/10.1038/sdata.2017.122</a></p> <p>Processed by:<br> mundialis GmbH & Co. KG, Germany (<a href="https://www.mundialis.de/">https://www.mundialis.de/</a>)</p> <p>Reference: Wright, J.M. (1997): Federal meteorological handbook no. 3 (FCM-H3-1997). Office of Federal Coordinator for Meteorological Services and Supporting Research. Washington, DC</p> <p>Data is also available in Latitude-Longitude/WGS84 (EPSG: 4326) projection: <a href="https://doi.org/10.5281/zenodo.6342776">https://doi.org/10.5281/zenodo.6342776</a></p>
Daily time series of spatially enhanced relative humidity for Europe at 1000 m resolution (Set 4: 2015 - 2019) derived from ERA5-Land data
<p>Overview:<br> ERA5-Land is a reanalysis dataset providing a consistent view of the evolution of land variables over several decades at an enhanced resolution compared to ERA5. ERA5-Land has been produced by replaying the land component of the ECMWF ERA5 climate reanalysis. Reanalysis combines model data with observations from across the world into a globally complete and consistent dataset using the laws of physics. Reanalysis produces data that goes several decades back in time, providing an accurate description of the climate of the past.</p> <p>Processing steps:<br> The original hourly ERA5-Land air temperature 2 m above ground and dewpoint temperature 2 m data has been spatially enhanced from 0.1 degree to 30 arc seconds (approx. 1000 m) spatial resolution by image fusion with CHELSA data (V1.2) (<a href="https://chelsa-climate.org/">https://chelsa-climate.org/</a>). For each day we used the corresponding monthly long-term average of CHELSA. The aim was to use the fine spatial detail of CHELSA and at the same time preserve the general regional pattern and fine temporal detail of ERA5-Land. The steps included aggregation and enhancement, specifically:<br> 1. spatially aggregate CHELSA to the resolution of ERA5-Land<br> 2. calculate difference of ERA5-Land - aggregated CHELSA<br> 3. interpolate differences with a Gaussian filter to 30 arc seconds<br> 4. add the interpolated differences to CHELSA</p> <p>Subsequently, the temperature time series have been aggregated on a daily basis. From these, daily relative humidity has been calculated for the time period 01/2000 - 07/2021.</p> <p>Relative humidity (rh2m) has been calculated from air temperature 2 m above ground (Ta) and dewpoint temperature 2 m above ground (Td) using the formula for saturated water pressure from Wright (1997):</p> <p><code>maximum water pressure = 611.21 * exp(17.502 * Ta / (240.97 + Ta))</code></p> <p><code>actual water pressure = 611.21 * exp(17.502 * Td / (240.97 + Td))</code></p> <p><code>relative humidity = actual water pressure / maximum water pressure</code></p> <p>Data provided is the daily averages of relative humidity. This set provides data for the years 2015 - 2019. For other time periods, please see further linked data sets.</p> <p>Resultant values have been converted to represent percent * 10, thus covering a theoretical range of [0, 1000].</p> <p>The data have been reprojected to EU LAEA.</p> <p>File naming scheme (YYYY = year; MM = month; DD = day):<br> <code>ERA5_land_rh2m_avg_daily_YYYYMMDD.tif</code></p> <p>Projection + EPSG code:<br> EU LAEA (EPSG: 3035)</p> <p>Spatial extent:<br> north: 6874000<br> south: -485000<br> west: 869000<br> east: 8712000</p> <p>Spatial resolution:<br> 1000 m</p> <p>Temporal resolution:<br> Daily</p> <p>Pixel values:<br> Percent * 10 (scaled to Integer; example: value 738 = 73.8 %)</p> <p>Software used:<br> GDAL 3.2.2 and GRASS GIS 8.0.0</p> <p>Original ERA5-Land dataset license:<br> <a href="https://apps.ecmwf.int/datasets/licences/copernicus/">https://apps.ecmwf.int/datasets/licences/copernicus/</a></p> <p>CHELSA climatologies (V1.2):<br> Data used: Karger D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E, Linder, H.P., Kessler, M. (2018): Data from: Climatologies at high resolution for the earth's land surface areas. Dryad digital repository. <a href="http://dx.doi.org/doi:10.5061/dryad.kd1d4">http://dx.doi.org/doi:10.5061/dryad.kd1d4</a><br> Original peer-reviewed publication: Karger, D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E., Linder, P., Kessler, M. (2017): Climatologies at high resolution for the Earth land surface areas. Scientific Data. 4 170122. <a href="https://doi.org/10.1038/sdata.2017.122">https://doi.org/10.1038/sdata.2017.122</a></p> <p>Processed by:<br> mundialis GmbH & Co. KG, Germany (<a href="https://www.mundialis.de/">https://www.mundialis.de/</a>)</p> <p>Reference: Wright, J.M. (1997): Federal meteorological handbook no. 3 (FCM-H3-1997). Office of Federal Coordinator for Meteorological Services and Supporting Research. Washington, DC</p> <p>Data is also available in Latitude-Longitude/WGS84 (EPSG: 4326) projection: <a href="http://https://doi.org/10.5281/zenodo.6344066">https://doi.org/10.5281/zenodo.6344066</a></p>
Data set from Fischertechnik Smart Factory Model at University of St.Gallen
<p>This is the data set of IoT data from the Fischertechnik Smart Factory Model deployed at the Institute of Computer Science at the University of St.Gallen. It is used as basis for the interactive identification of process activity executions from the IoT data. The corresponding publication can be found here:</p> <p>Seiger, R., Franceschetti, M., & Weber, B. (2023). An Interactive Method for Detection of Process Activity Executions from IoT Data. <em>Future Internet</em>, <em>15</em>(2), 77.<br> <a href="https://doi.org/10.3390/fi15020077">https://doi.org/10.3390/fi15020077</a></p> <p>The data set contains:</p> <ul> <li><strong>cps_log.txt:</strong> A file of all sensor and actuator readings (in JSON format) from the smart factory during the execution of 3 instances of the storage process and 3 instances of the production process. For visualization, it can be fed line-by-line into an <a href="https://www.influxdata.com/">Influx</a> database and <a href="https://grafana.com/">Grafana</a> can then be used to create visualizations of the data.</li> <li><strong>wfms_log.txt:</strong> A file containing the corresponding event log (in JSON format) recorded and extracted from the <a href="https://camunda.com/">Camunda Platform</a> workflow management system during the execution of the process instances. For visualization, it can be fed line-by-line into an <a href="https://www.influxdata.com/">Influx</a> database and <a href="https://grafana.com/">Grafana</a> can then be used to create visualizations of the data.</li> <li><strong>storage_process.bpmn:</strong> Executable BPMN 2.0 model of the storage process executed in the smart factory model.</li> <li><strong>production_process.bpmn:</strong> Executable BPMN 2.0 model of the storage process executed in the smart factory model.</li> </ul> <p>More details on the systems architecture used to execute the processes and record the data from the smart factory can be found in the follow publication:</p> <p>Ronny Seiger, Lukas Malburg, Barbara Weber, Ralph Bergmann,<br> Integrating process management and event processing in smart factories: A systems architecture and use cases,<br> Journal of Manufacturing Systems, Volume 63, 2022, Pages 575-592, ISSN 0278-6125,<br> <a href="https://doi.org/10.1016/j.jmsy.2022.05.012">https://doi.org/10.1016/j.jmsy.2022.05.012</a></p>
celegans scRNA data set objects
<p>Combined and converted scRNA data from (Packer and Zhu et al. 2019), see a detailed description of the study here: https://www.science.org/doi/full/10.1126/science.aax1971</p> <p>Data were downloaded from https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE126954 converted into Seurat object and converted into loom and AnnData (h5ad) files to be able to analyse with e.g. python scanpy package.</p> <p>If you use this data, please cite Packer and Zhu et al. 2019.</p>
Data set of German coal power stations for coal phase out auctions
<p>This repository contains the coal power station data set used in the paper "Auctions to phase out coal power: Lessons learned from Germany" by Silvana Tiedemann and Finn Müller-Hansen, published in Energy Policy in 2023. All details about the data set are provided in the readme.md.</p> <p> </p>
Diversity-Driven Unit Test Generation (Data Set)
<p>The goal of automated unit test generation tools is to create a set of test cases for the software under test that achieve the highest possible coverage for the selected test quality criteria. The most effective approaches for achieving this goal at the present time use meta-heuristic optimization algorithms to search for new test cases using fitness functions defined on existing sets of test<br> cases and the system under test. Regardless of how their search algorithms are controlled, however, all existing approaches focus on the analysis of exactly one implementation, the software under test, to drive their search processes, which is a limitation on the information they have available. In this paper we investigate whether the practical effectiveness of white box unit test generation tools can be increased by giving them access to multiple, diverse implementations of the functionality under test harvested from widely available Open Source software repositories. After presenting a basic implementation of such an approach, DivGen (Diversity-driven Generation), on top of the leading test generation tool for Java (EvoSuite), we assess the performance of DivGen compared to EvoSuite when applied in its traditional, mono-implementation oriented mode (MonoGen). The results show that while DivGen outperforms MonoGen in 33% of the sampled classes for mutation coverage (+16% higher on average), MonoGen outperforms<br> DivGen in 12.4% of the classes for branch coverage (+10% higher average).</p>
Two metabolomics data sets (mouse kidney, mouse plasma), generated for the publication Bignon et al., 2023: "Multiomics reveals multilevel control of renal and systemic metabolism by the renal tubular circadian clock".
<p><strong>Publication: </strong>Bignon Y, Wigger L, Ansermet C, Weger BD, Lagarrigue S, Centeno G, Durussel F, Götz L, Ibberson M, Pradervand S, Quadroni M, Weger M, Amati F, Gachon F, Firsov D. Multiomics reveals multilevel control of renal and systemic metabolism by the renal tubular circadian clock. J Clin Invest. 2023 Mar 2:e167133. doi: 10.1172/JCI167133. Epub ahead of print. PMID: 36862511.</p> <p> </p> <p><strong>Abstract: </strong> Circadian rhythmicity in renal function suggests rhythmic adaptations in renal metabolism. To decipher the role of the circadian clock in renal metabolism, we studied diurnal changes in renal metabolic pathways using integrated transcriptomic, proteomic, and metabolomic analysis performed on control mice and mice with inducible deletion of the circadian clock regulator Bmal1 in the renal tubule (cKOt). With this unique resource, we demonstrated that ~30% RNAs, ~20% proteins and ~20% metabolites are rhythmic in kidneys of control mice. Several key metabolic pathways including NAD+ biosynthesis, fatty acid transport, carnitine shuttle,and b-oxidation displayed impairments in kidneys of cKOt, resulting in a perturbed mitochondrial activity. Carnitine reabsorption from the primary urine was one of the most impacted processes with a ~50% reduction in plasma carnitine levels and a parallel systemic decrease in tissues carnitine content. This suggests that the circadian clock in the renal tubule controls both kidney and systemic physiology.</p> <p> </p> <p><strong>This record contains two separate mass-spectrometry metabolomics data sets associated with this study:</strong></p> <ol> <li>Metabolic profile of renal tubules, MS/MS data, Metabolon, Morrisville, NC (N=60)</li> <li>Metabolic profile of blood plasma, MS/MS data, Biocrates, Innsbruck, Austria (N=60)</li> </ol> <p>For each data set, original data as received from the platforms and processed data as used in the data analysis are provided. Preprocessing of kidney data included removal of metabolites with more than 80% missing data values, median normalization, imputation and glog2 transformation. Preprocessing of plasma data included filtering of metabolites with any missing data and log2 transformation. Details of data processing are available in the STAR*methods of the publication.</p> <p> </p> <p><strong>Data sets in other repositories associated with the same study:</strong></p> <p>Additional data sets (transcriptomics, proteomics) pertaining to the same study have been deposited in public repositories:</p> <ul> <li>Gene Expression Omnibus (NCBI GEO), GSE216252</li> <li>PRIDE Archive (EMBL-EBI), PXD036803</li> </ul> <p> </p>
Supplemental Data Sets for "Buried Ice Deposits in Lunar Polar Cold Traps were Disrupted by Ballistic Sedimentation"
<p>Supporting Data Sets for manuscript "Buried Ice Deposits in Lunar Polar Cold Traps were Disrupted by Ballistic Sedimentation". Contains Data Sets S1-S7 as described in the manuscript and Supplementary information S1 (see <a href="https://doi.org/10.1029/2022JE007567">https://doi.org/10.1029/2022JE007567</a>).</p>
ShiftCrypt training data set for training ConforMine
<p>Data set containing the ShiftCrypt values of the proteins used for training ConforMine. This set is not to be confused the the Molecular Dynamics (MD) data set, also used for training of this model. </p> <p>The data set also contains a python script which recreates the filtering of sequences performed in the training steps of ConforMine, which discards all proteins for which no valid ShiftCrypt predictions were obtained. </p>
Metrics As Scores Dataset: The Iris Flower Data Set
<p>The Iris flower data set or Fisher’s Iris data set is a multivariate data set used and made famous by the British statistician and biologist Ronald Fisher. The dataset was introduced in his 1936 paper "The Use of Multiple Measurements in Taxonomic Problems" (Fisher 1936) as an example of linear discriminant analysis.</p> <p>This dataset has the following Features:</p> <ul> <li><em>Petal.Length</em>: Length of the petal</li> <li><em>Petal.Width</em>: Width of the petal</li> <li><em>Sepal.Length</em>: Length of the sepal</li> <li><em>Sepal.Width</em>: Width of the sepal</li> </ul> <p>It has a total of 3 <strong>Groups</strong>: <em>setosa</em>, <em>versicolor</em>, and <em>virginica</em>.</p>
Data Set on Chilean Undersecretaries (1990-2022)
<p><strong>Data Set on Chilean Undersecretaries (1990-2022)</strong></p> <p>This repository contains a data set on Chilean undersecretaries between 1990 and 2022 in Comma-Separated Values (CSV) format with Unicode encoding (UTF-8). The data collection was carried out based on official sources such as archives of Congress and ministries, the National Library, and press archives.</p> <p><strong>GitHub repository:</strong> <a href="https://github.com/bgonzalezbustamante/chilean-undersecretaries">https://github.com/bgonzalezbustamante/chilean-undersecretaries</a></p>
Data Set on Chilean Ministers (1990-2014)
<p><strong>Data Set on Chilean Ministers (1990-2014)</strong></p> <p>This repository contains a data set on Chilean ministers between 1990 and 2014 in Comma-Separated Values (CSV) format with Unicode encoding (UTF-8). The data collection was carried out based on official sources such as archives of Congress and ministries, the National Library, and press archives.</p> <p><strong>GitHub repository:</strong> <a href="https://github.com/bgonzalezbustamante/chilean-ministers">https://github.com/bgonzalezbustamante/chilean-ministers</a></p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.