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986 results for “exchange”
Mapping structures and dynamics with frequency-correlated diffusion exchange
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Palmitoyltransferase ZDHHC19 regulates histone-to-protamine exchange during spermiogenesis in mice
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Sighting, group composition, and tactile exchange for a study on Atlantic spotted dolphins around Bimini, The Bahamas
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Data from: Precipitation and nitrogen enrichment impact carbon exchange and stability: From antagonism to synergy with increasing shrub encroachment
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Growth, gas exchange and hydraulic conductivity of greenhouse grown willows under pre-drought conditions: Investigating patterns of habitat specialization in fifteen co-occurring willow and poplar species.
Thirteen willow (Salix) species occur in southeastern Minnesota and often co-occur within the same wetlands. This high local diversity is challenging to explain since closely related species are often functionally similar and density-dependent interactions such as competition and susceptibility to pests and pathogens should limit their co-occurrence. However, if willow species are partitioning resources, or if they are phylogenetically structured so that closely related species rarely co-occur, then the impact of these density-dependent processes could be reduced. In this study, I examined the role of niche partitioning in maintaining local willow diversity by documenting species distributions in plots across a water availability gradient and comparing species physiology in the field and greenhouse. By taking a phylogenetic approach, I also investigated whether willow communities exhibit phylogenetic community structure and whether there is evidence for environmental filtering.
1996 Ring soil texture, pH and Cation Exchange Capacity (CEC):BioCON : Biodiversity, Elevated CO2, and N Enrichment
BioCON (Biodiversity, CO2, and Nitrogen) is an ecological experiment started in 1997 at the University of Minnesota's Cedar Creek Ecosystem Science Reserve. BioCON's goal is to explore the ways in which plant communities will respond to three environmental changes that are known to be occurring on a global scale: increasing nitrogen deposition, increasing atmospheric CO2, and decreasing biodiversity. Why Biodiversity, CO2, and Nitrogen? While there are many uncertainties in global change biology, there are also some well documented facts. Some of these are: 1. The amount of carbon dioxide (CO2) in the atmosphere is rising. Since the industrial revolution, the CO2 concentration in the atmosphere has increased from approximately 275 parts per million (ppm) to about 378 ppm today. This has been largely the result of fossil fuel burning. It is expected that CO2 levels will continue to rise, and that by the year 2050 these levels will be approximately 550 ppm. CO2 is the raw material for photosynthesis and is known to affect plant growth and development. 2. The amount of nitrogen moving through terrestrial ecosystems has increased in the recent past. While natural "background" levels of nitrogen fixation have remained constant, human additions to the system through fertilizer production and fossil fuel use have increased dramatically. Nitrogen is a key nutrient for plant growth and plays a critical role in plant community structure and composition in many environments. 3. Biodiversity levels are falling. While the research and data are not as complete as they are for CO2 and nitrogen, data indicate that the number of species globally, is being reduced. Perhaps more important for ecosystem function, diversity levels on local to regional scales have fallen due to land use change, biotic invasion and many other drivers. While much is known about how each of these factors affects ecosystem functioning, many questions remain. There is also little data on how these issues affe
TeRaCON Leaf Gas Exchange:E141 - BioCON: Biodiversity, CO2, and Nitrogen
BioCON (Biodiversity, CO2, and Nitrogen) is an ecological experiment started in 1997 at the University of Minnesota's Cedar Creek Ecosystem Science Reserve. BioCON's goal is to explore the ways in which plant communities will respond to three environmental changes that are known to be occurring on a global scale: increasing nitrogen deposition, increasing atmospheric CO2, and decreasing biodiversity. Why Biodiversity, CO2, and Nitrogen? While there are many uncertainties in global change biology, there are also some well documented facts. Some of these are: 1. The amount of carbon dioxide (CO2) in the atmosphere is rising. Since the industrial revolution, the CO2 concentration in the atmosphere has increased from approximately 275 parts per million (ppm) to about 378 ppm today. This has been largely the result of fossil fuel burning. It is expected that CO2 levels will continue to rise, and that by the year 2050 these levels will be approximately 550 ppm. CO2 is the raw material for photosynthesis and is known to affect plant growth and development. 2. The amount of nitrogen moving through terrestrial ecosystems has increased in the recent past. While natural "background" levels of nitrogen fixation have remained constant, human additions to the system through fertilizer production and fossil fuel use have increased dramatically. Nitrogen is a key nutrient for plant growth and plays a critical role in plant community structure and composition in many environments. 3. Biodiversity levels are falling. While the research and data are not as complete as they are for CO2 and nitrogen, data indicate that the number of species globally, is being reduced. Perhaps more important for ecosystem function, diversity levels on local to regional scales have fallen due to land use change, biotic invasion and many other drivers. While much is known about how each of these factors affects ecosystem functioning, many questions remain. There is also little data on how these issues affe
McMurdo Dry Valleys Streamflow and hyporheic thermal regimes influence on hyporheic storage and exchange at Von Guerard Stream, 2006
We describe the modeling data created and used to study the influence of stream and hyporheic thermal regimes on hyporheic storage and exchange, as well as the field data used in the study. Models and methodologies are also described, along with the physical details of the data. In streams, such as those in the McMurdo Dry Valleys, that experience large daily fluctuations in temperature, associated changes in water density and dynamic viscosity could affect hyporheic characteristics.  Figure: Longitudinal view of stream and hyporheic temperatures at each of the 11 temperature proble locations at two different times. One time, 8:30, was in the middle of the cool morning experiment, the second time, 15:00 was in the middle of the warm afternoon experiment.  Open circles represent stream temperatures. Filled diamonds, squares, and triangles represent temperatures at 5, 10, and 20 cm depths below the streambed surface, respectively
SGS-LTER CO2 Elevation Study: Gas exchange of the major species measured at chamber CO2 concentrations in Open Top Chambers on the Central Plains Experimental Range, Nunn, Colorado, USA 1997 - 2001
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/82454. Single leaf gas exchange (CO2 & H2O) was measured several times per season on important grass species in the shortgrass steppe open-top-chamber experiment, to investigate physiological adaptations to elevated CO2. C3 grass displayed photosynthetic acclimation, while C4 grass did not. Leaf water-use-efficiency was improved under ECO2. Absolute assimilation rates were more dependent on soil and plant water status than on CO2. This research was conducted at the Central Plains Experimental Range, near Nunn, CO; lat.40degrees 40 minutes N; long. 104 degrees 45 minutes W in the shortgrass steppe region of NE Colorado, USA and as a collaboration between SGS-LTER and USDA-ARS researchers.
SGS-LTER CO2 Elevation Study: Gas exchange at 8 light levels in major Open Top Chamber species on the Central Plains Experimental Range, Nunn, Colorado, USA 1997 - 2001
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/82454. Single leaf gas exchange (CO2 & H2O) was measured several times per season on important grass species in the shortgrass steppe open-top-chamber experiment. Cuvette light levels were varied to investigate physiological adaptations to elevated CO2. This research was conducted at the Central Plains Experimental Range, near Nunn, CO; lat.40degrees 40 minutes N; long. 104 degrees 45 minutes W in the shortgrass steppe region of NE Colorado, USA and as a collaboration between SGS-LTER and USDA-ARS researchers.
Exchangeable Ammonium in Seagrass in Hog Island Bay, VA 2008-2010
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Replica exchange molecular dynamics simulation data of designed β-hairpins (implicit solvent, AMBER ff99SB-ildn-nmr)
<p>Raw REMD simulation data (protein only) of designed β-hairpins. AMBER ff99SB-ildn-nmr and implicit solvent model is used. More details can be found in this paper: </p> <p>Yunhui Ge, Brandon Kier, Niels H. Andersen and Vincent A. Voelz. <a href="https://pubs.acs.org/doi/10.1021/acs.jcim.7b00132"><em>Computational and experimental evaluation of designed beta-cap hairpins using molecular simulations and kinetic network models.</em></a> J. Chem. Inf. Model., 2017, 57 (7), pp 1609–1620</p>
Data from: Community carbon and water exchange responses to warming and precipitation enhancement in sandy grassland along a restoration gradient
Temperature increasing and precipitation alteration are predicted to occur in arid and semi-arid lands, however, the response mechanism of carbon and water exchange at community level is still unclear in semi-arid sandy land. We investigated the responses of carbon and water exchanges to warming and precipitation enhancement along a sand-dune restoration gradient: mobile sand dunes (MD), semi-fixed sand dunes (SFD) and fixed sand dunes (FD). The average net ecosystem productivity (NEP) and evapotranspiration (ET) between May and August increased by 98% and 59%, respectively, from MD to SFD. While they had no significant differences between FD and the other two habitats. Warming inhibited ecosystem NEP, ET and water use efficiency (WUE) by 69%), 49% P<0.001 and 80%, respectively in SFD, while it nearly had no significant effects in MD and FD. However, precipitation addition by 30% nearly had no significant effects on community NEP, ET and WUE, except for warming treatment in FD. In general, precipitation addition of 30% may still not be enough to prevent drought stress for growth of plants, due to with low water-holding capacity and high evaporation rates in sandy land. Temperature increase magnified drought stress as it increased evapotranspiration rates especially in summer. In addition, community NEP, ET and WUE were usually influenced by interactions between habitats and temperature, as well as the interactions among habitats, temperature and precipitation. Species differences in each habitat along the restoration gradient may alter climate sensitivity of sandy land. These results will support in understanding and the prediction of the impacts of warming and precipitation change in semiarid sandy grassland.
The sodium/proton exchanger NHA2 regulates blood pressure through a WNK4-NCC dependent pathway in the kidney
<p>NHA2 is sodium/hydrogen exchanger that was associated with arterial hypertension in humans, but the role of NHA2 in kidney function and blood pressure homeostasis is currently unknown. Here we show that NHA2 localizes almost exclusively to distal convoluted tubules in the kidney. NHA2 knock-out mice displayed reduced blood pressure, normocalcemic hypocalciuria and an attenuated response to the thiazide diuretic hydrochlorothiazide. Phosphorylation of the thiazide-sensitive sodium/chloride cotransporter NCC and its upstream activating kinase Ste20/SPS1-related proline/alaninerich kinase (SPAK), as well as the abundance of with no lysine [K] kinase 4 (WNK4), were significantly reduced in kidneys of NHA2 knock-out mice. In vitro experiments recapitulated these findings and revealed increased WNK4 ubiquitylation and enhanced proteasomal WNK4 degradation upon loss of NHA2. The effect of NHA2 on WNK4 stability was Kelch-like 3 (KLHL3)-dependent. More specifically, loss of NHA2 selectively attenuated KLHL3 phosphorylation and the physiologically important PKAand PKC-mediated decrease of WNK4 degradation was blunted upon loss of NHA2. Phenotype analysis of NHA2/NCC double knock-out mice supported the notion that NHA2 affects blood pressure homeostasis by an intrarenal and NCC-dependent mechanism. In summary, our data reveal NHA2 as a critical component of the WNK4-NCC pathway and hence as a novel regulator of blood pressure homeostasis in the kidney.</p>
Flow through a submerged canopy partially covering the bed: spatial flow pattern, multi-dimensional vortices and junction momentum exchange
<p>The dataset (including videos) are uploaded to support the research study <strong>Flow through a submerged canopy partially covering the bed: spatial flow pattern, multi-dimensional vortices and junction momentum exchange (submitted to Water Resources Research) </strong></p>
Data from: Cryptic sex? Estimates of genome exchange in unisexual mole salamanders (Ambystoma sp.)
Cryptic sex has been argued to explain the exceptional longevity of certain parthenogenetic vertebrate lineages, yet direct measurements of genetic exchange between sexual and apparently parthenogenetic forms are rare. Female unisexual mole salamanders (Ambystoma sp.) are the oldest known unisexual vertebrate lineage (~5 million years), and one hypothesis for their persistence is that allopolyploid female unisexuals periodically exchange haploid genomes 'genome exchange' during gynogenetic reproduction with males from sympatric sexual species. We test this hypothesis by using genome-specific microsatellite DNA markers to estimate the rates of genome exchange between sexual males and unisexual females in two ponds in NE Ohio. We also test the prediction that levels of gene flow should be higher for 'sympatric' (sexual males present) genomes in unisexuals compared to 'allopatric' (sexual males absent) unisexual genomes. We used a model testing framework in the coalescent-based program MIGRATE-N to compare models where unidirectional gene flow is present and absent between sexual species and unisexuals. As predicted, our results show higher levels of gene flow between sexuals and sympatric unisexual genomes compared to lower (likely artefactual) levels of gene flow between sexuals and allopatric unisexual genomes. Our results provide direct evidence that genome exchange between sexual and unisexual Ambystoma occurs and demonstrate that the magnitude depends on which sexual species are present. The relatively high levels of gene flow suggest that unisexuals must be at a selective advantage over sexual forms so as to avoid extinction due to genetic swamping through genome exchange.
Data from: Small volume plasma exchange for Guillain-Barré syndrome in resource-limited settings: a phase II safety and feasibility study
OBJECTIVE: To assess the safety and feasibility of small volume plasma exchange (SVPE) as an alternative to standard plasma exchange (PE) or intravenous immunoglobulin (IVIg) for Guillain-Barré syndrome (GBS) patients. DESIGN: Non-randomized, single arm, interventional trial. SETTING: National Institute of Neurosciences and Hospital, Dhaka, Bangladesh. PARTICIPANTS: Twenty adult (>18 years) patients with GBS presented within 2 weeks of onset of weakness who were unable to walk unaided for more than 10 meters. INTERVENTIONS: SVPE involves blood cell sedimentation in a blood bag and removal of supernatant plasma after blood cells are re-transfused. This procedure was repeated three to six times a day, for eight consecutive days. OUTCOME MEASURES: Serious adverse events (SAE) were defined as severe sepsis and deep venous thrombosis related to the central vein catheter (CVC) used during SVPE. SVPE was considered safe if less than 5/20 patients experienced a SAE, and feasible if 8 L plasma could be removed within 8 days in at least 15/20 patients. RESULTS Median patient age 33 years (IQR 23-46; range 18-55); 13 (65%) were male. Median MRC sum score was 20 (IQR 0-29; range 0-36); three (15%) patients required mechanical ventilation. One patient developed SAE (severe sepsis, possibly related to CVC). Minor adverse effects were transient hypotension in 10 (50%) patients; CVC-associated bleeding in 10 (50%); transfusion reaction to fresh frozen plasma in 4 (20%); and hypo-albuminemia, anaemia or electrolyte imbalance in 4 (20%). Removal of 8 L plasma was possible in 15 (75%) patients. GBS disability score improved by at least one grade in 14 (70%) patients four weeks after SVPE started. No patients died. CONCLUSION: SVPE seems a safe and feasible alternative treatment to standard PE or IVIg for GBS; further studies of clinical efficacy in low-resource developing countries are warranted. TRIAL REGISTRATION: Clinicaltrials.gov NCT02780570 on May 23, 2016. Strength and limitations of the study: 1. The strength of this study underlies the novel and simple technique of SVPE, which is much less expensive than conventional immunotherapies (plasma exchange and intravenous immunoglobulin). 2. SVPE is corroborated as safe and feasible for the first time in a prospective and standardized cohort of patients with Guillain-Barré syndrome (GBS). 3. The intrinsic limitations of this study are its non-randomized, single arm nature, which is conducted in a single center with a limited sample size of GBS patients. 4. Clinical efficacy of SVPE on patients with GBS was a secondary end-point assessment and therefore deserves a randomized controlled trial in future to assess the clinical efficacy of SVPE for the patients with GBS.
Data from: Range-wide multilocus phylogeography of the red fox reveals ancient continental divergence, minimal genomic exchange, and distinct demographic histories
Widely distributed taxa provide an opportunity to compare biogeographic responses to climatic fluctuations on multiple continents and to investigate speciation. We conducted the most geographically and genomically comprehensive study to date of the red fox (Vulpes vulpes), the world's most widely distributed wild terrestrial carnivore. Analyses of 697 bp of mitochondrial sequence in ~1000 individuals suggested an ancient Middle Eastern origin for all extant red foxes and a 400 kya (SD = 139 kya) origin of the primary North American (Nearctic) clade. Demographic analyses indicated a major expansion in Eurasia during the last glaciation (~50 kya), coinciding with a previously described secondary transfer of a single matriline (Holarctic) to North America. In contrast, North American matrilines (including the transferred portion of Holarctic clade) exhibited no signatures of expansion until the end of the Pleistocene (~12 kya). Analyses of 11 autosomal loci from a subset of foxes supported the colonization timeframe suggested by mtDNA (and the fossil record) but, in contrast, reflected no detectable secondary transfer, resulting in the most fundamental genomic division of red foxes at the Bering Strait. Endemic continental Y-chromosome clades further supported this pattern. Thus, intercontinental genomic exchange was overall very limited, consistent with long-term reproductive isolation since the initial colonization of North America. Based on continental divergence times in other carnivoran species pairs, our findings support a model of peripatric speciation and are consistent with the previous classification of the North American red fox as a distinct species, V. fulva.
Data from: Horizontal partner exchange does not preclude stable mutualism in fungus-growing ants
Vertical symbiont transmission tends to stabilize mutualisms by aligning the reproductive interests of cooperating species. The attine ants conform well to this principle, because all species are nutritionally dependent on vertically transmitted and clonally propagated fungal cultivars. Multiple mechanisms expressed by both partners constrain cultivar transmission between established colonies, but these appear not to preclude horizontal transfer during colony founding, consistent with multiple phylogenetic analyses indicating at least occasional horizontal transfer. The ecological and evolutionary impact of transfers is unknown because, although they can be induced in laboratory experiments, they remain undocumented in natural colonies. In a large-scale field study, we manipulated clusters of newly founded nests and their still portable gardens in two sympatric species of Acromyrmex leaf-cutting ants. This created mosaics of intact nests, queens without a cultivar, and cultivars without a tending queen. We tracked the movements of queens and cultivars through direct observation and microsatellite analysis, respectively. This showed that horizontal acquisition of incipient gardens is surprisingly common, because queens actively searched for replacement cultivars and often adopted orphaned gardens. However, these horizontal cultivar exchanges are unlikely to destabilize obligate farming mutualisms when they are restricted to the founding stage, as colonies eventually commit to a single cultivar clone, irreversibly aligning the partners' fitness interests before colonies reproduce.
Data from: Energy exchanges at contact events guide sensorimotor integration across intermodal delays
The brain must consider the arm's inertia to predict the arm's movements elicited by commands impressed upon the muscles. Here, we present evidence suggesting that the integration of sensory information leading to the representation of the arm's inertia does not take place continuously in time but only at discrete transient events, in which kinetic energy is exchanged between the arm and the environment. We used a visuomotor delay to induce cross-modal variations in state feedback and uncovered that the difference between visual and proprioceptive velocity estimations at isolated collision events was compensated by a change in the representation of arm inertia. The compensation maintained an invariant estimate across modalities of the expected energy exchange with the environment. This invariance captures different types of dysmetria observed across individuals following prolonged exposure to a fixed intermodal temporal perturbation and provides a new interpretation for cerebellar ataxia.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.