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3,878 results for “Molecular Data”
FIGURE 3 in Description of Electrogena sartorii sp. nov., a new representative of the genus Electrogena Zurwerra & Tomka, 1985 (Ephemeroptera: Heptageniidae), from Iran using molecular and morphological data
FIGURE 3. Whole larva in dorsal view with body coloration of Electrogena sartorii sp. nov.
FIGURE 1 in Strobilanthes medahinnensis (Acanthaceae) a new species, based on morphological and molecular data, from the Peak Wilderness Nature Reserve, Sri Lanka
FIGURE 1. Strobilanthes medahinnensis and Strobilanthes anceps recorded localities in Sri Lanka.
Counteracting dephasing in Molecular Nanomagnets by optimized qudit encodings. Open data set
<p>Data supporting the original figures 1, 2, 3, 4, 5, 7 of the related publication.</p>
Figure 3 a–b in Mideopsis milankovici sp. nov. a new water mite from Montenegro based on morphological and molecular data (Acariformes, Hydrachnidia, Mideopsidae)
Figure 3 a–b Mideopsis milankovici sp. nov., ♀ paratype, Međurječka rijeka stream, Montenegro. a – ventral shield; b – palp; c–e, ejaculatory complex (c–d, from Biesiadka and Kowalik 1979; e – from Pešić and Saboori 2015): c – M. orbicularis (Müller, 1776); d – M. roztoczensis Biesiadka & Kowalik, 1979; e – M. persicus Pešić & Saboori, 2015. Scale bar = 100 µm.
Figure 6 in Phylogenetic relationships of thorny catfishes (Siluriformes: Doradidae) inferred from molecular and morphological data
Figure 6. Maximum likelihood tree of Doradidae inferred from nuclear EF1a intron and exon sequence data. Numbers at nodes represent Bayesian posterior probability percentages, ML bootstrap (500 pseudoreplicates) values, MP bootstrap (1000 pseudoreplicates) values. Nodes without support values represent <50% support obtained by each method (Bayesian, ML, MP). This is an unrooted tree; the black star indicates the hypothetical attachment point of the root (see Fig. 7).
FIGURE 1 in A novel species of Ischaemum (Poaceae, Andropogoneae) from the northern Western Ghats, India, based on morphological and molecular data
FIGURE 1. Collection locations of Ischaemum amboliense in India.
FIGURE 3 in Cymbidium weishanense (Orchidaceae; Epidendroideae), a new species from China: evidence from morphological and molecular data
FIGURE 3. Cymbidium weishanense (A), C. concinnum (B) and C. insigne (C).
Figure 1. A in Phylogenetic relationships and evolution of Orbiniidae (Annelida, Polychaeta) based on molecular data
Figure 1. A, Protoaricia oerstedi, lateral view. B, Methanoaricia dendrobranchiata, anterior end. C, Naineris dendritica, anterior end. D, Naineris dendritica, notopodium with camerated chaetae. Abbreviations: cc, camerated chaetae; per, peristomal ring.
Figure 5 in Phylogenetic relationships and evolution of Orbiniidae (Annelida, Polychaeta) based on molecular data
Figure 5. Maximum likelihood tree of the combined dataset based on the GTR + I + G model of sequence evolution (–lnL = 14756.30445). The first value at each node represents the ML bootstrap support, the second the Bayesian posterior probability. Taxa which are discussed in detail in the discussion are in bold type.
Controlled coherent dynamics of [VO(TPP)], a prototype molecular nuclear qudit with an electronic ancilla. Open data set
<p>Data supporting the original figures 2, 3, 4, 5, 6, 7, 8 of the related publication.</p>
data for "An unbound proline-rich signaling peptide frequently samples cis conformations in Gaussian accelerated molecular dynamics simulations"
<p>Disordered proline-rich motifs are common across the proteomes of many species and are often involved in protein-protein interactions. Proline is a unique amino acid due to the covalent bond between the backbone nitrogen and the proline side chain. The resulting five-membered ring allows proline to sample the <em>cis</em> state about its peptide bond, which other residues cannot do as readily. Because proline-rich disordered sequences exist as ensembles that likely include structures with the proline peptide bond in <em>cis</em>, a robust methodology to accurately account for these conformations in the overall ensemble is crucial. Observing the <em>cis </em>conformations of proline in a disordered sequence is challenging both experimentally and computationally. Nitrogen-hydrogen NMR spectroscopy cannot directly observe proline residues, which lack an amide bond, and computational methods struggle to overcome the large kinetic barrier between the <em>cis </em>and <em>trans </em>states, since isomerization usually occurs on the order of seconds. In the current work, Gaussian accelerated molecular dynamics was used to overcome this free energy barrier and simulate proline isomerization in a tetrapeptide (KPTP) and in the 12-residue proline-rich SH3 binding peptide, ArkA. We found that Gaussian accelerated molecular dynamics, when combined with a lowered peptide bond dihedral angle potential energy barrier (15 kcal/mol), allowed sufficient sampling of the proline <em>cis </em>and <em>trans </em>states on a microsecond timescale. All ArkA prolines spend a significant fraction of time in <em>cis</em>, leading to a more compact ensemble with less polyproline II helix structure than an ArkA ensemble with all peptide bonds in <em>trans</em>. The ensemble containing <em>cis</em> prolines also matches more closely to <em>in vitro</em> circular dichroism data than the all-<em>trans</em> ensemble. The ability of the ArkA prolines to isomerize likely affects the peptide’s ability to bind its partner SH3 domain, and should be studied further. This is the first molecular dynamics simulation study of proline isomerization in a biologically relevant proline-rich sequence that we know of, and a similar protocol could be applied to study multi-proline isomerization in other proline-containing proteins to improve conformational diversity and agreement with <em>in vitro</em> data.</p>
Molecular dynamics simulation data of stapled peptides
<p>Molecular dynamics simulations for Axin and HIV peptides.</p>
FIGURE 15 in Annotated and updated checklist of marine crabs (Decapoda: Brachyura) of Mozambique supported by morphological and molecular data from shelf and slope species of the "MOZAMBIQUE" surveys
FIGURE 15. Charybdis africana ♂ IEO-CD-MZ08/1813-2. A. Carapace; B, G1; C, Telson. Scale bar: 1cm.
FIGURE 8. Mugil curvidens. Lectotype, MNHN 2012.0400 in Taxonomic review of the species of Mugil (Teleostei: Perciformes: Mugilidae) from the Atlantic South Caribbean and South America, with integration of morphological, cytogenetic and molecular data
FIGURE 8. Mugil curvidens. Lectotype, MNHN 2012.0400, SL 69.9 mm.
Figure 1 from: Lumbsch T, Kantvilas G, Parnmen S (2012) Molecular data support placement of Cameronia in Ostropomycetidae (Lecanoromycetes, Ascomycota). MycoKeys 5: 31-44. https://doi.org/10.3897/mycokeys.5.4140
Figure 1 - Phylogenetic placement of Cameronia as inferred from a concatenated alignment of mtSSU and nuLSU DNA sequences. This is a simplified cartoon of the optimal tree under maximum likelihood with well supported families and species groups collapsed that were shown in previous studies (Baloch et al. 2010; Lumbsch et al. 2007a; Lumbsch et al. 2007b; Wedin et al. 2005). Asterisks indicate branches with likelihood bootstrap support values above 70% and posterior probabilities equal or above 0.95.
Figure 8 from: Guayasamin J, Paez D, Yanez M (2011) A new species of Andean toad (Bufonidae, Osornophryne) discovered using molecular and morphological data, with a taxonomic key for the genus. ZooKeys 108: 73-97. https://doi.org/10.3897/zookeys.108.1129
Figure 8 - Osteology of hand and foot of Osornophryne simpsoni sp. n. in ventral view; adult male, QCAZ 45899.
Figure 1 from: Guayasamin J, Paez D, Yanez M (2011) A new species of Andean toad (Bufonidae, Osornophryne) discovered using molecular and morphological data, with a taxonomic key for the genus. ZooKeys 108: 73-97. https://doi.org/10.3897/zookeys.108.1129
Figure 1 - Maximum likelihood phylogeny of the species in Osornophryne inferred from the mitochondrial gene 12S (lnL = –1384,3649).
Figure 3 from: Guayasamin J, Paez D, Yanez M (2011) A new species of Andean toad (Bufonidae, Osornophryne) discovered using molecular and morphological data, with a taxonomic key for the genus. ZooKeys 108: 73-97. https://doi.org/10.3897/zookeys.108.1129
Figure 3 - Osornophryne simpsoni sp. n. in alcohol. A–C Dorsal, ventral and lateral views of holotype, adult male, QCAZ 49774, SVL 20.1 mm D–F Dorsal, ventral and lateral views of adult female, DH-MECN 5260, SVL 33.0 mm.
Figure 11 from: Guayasamin J, Paez D, Yanez M (2011) A new species of Andean toad (Bufonidae, Osornophryne) discovered using molecular and morphological data, with a taxonomic key for the genus. ZooKeys 108: 73-97. https://doi.org/10.3897/zookeys.108.1129
Figure 11 - Head shape in dorsal and lateral views of Osornophryne females. Illustrated species are: Osornophryne angel, QCAZ 43560; Osornophryne antisana, QCAZ 48221; Osornophryne bufoniformis, QCAZ 40122; Osornophryne cofanorum, DH-MECN 6194; Osornophryne guacamayo, QCAZ 26047; Osornophryne simpsoni, DH-MECN 5260; Osornophryne occidentalis, QCAZ 43498; Osornophryne percrassa, ICN 319; Osornophryne puruanta, QCAZ 11471; Osornophryne sumacoensis, QCAZ 41244; Osornophryne talipes, EPN 2823. Not drawn at scale.
Figure 5 from: Guayasamin J, Paez D, Yanez M (2011) A new species of Andean toad (Bufonidae, Osornophryne) discovered using molecular and morphological data, with a taxonomic key for the genus. ZooKeys 108: 73-97. https://doi.org/10.3897/zookeys.108.1129
Figure 5 - Skull and hyoid of Osornophryne simpsoni sp. n., adult male, QCAZ 45899. A Dorsal view of skull B Ventral view of skull C Lateral view of skull D Ventral view of hyoid.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.