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4,144 results for “ITS barcode”
Figure 3 from: Bubner B, Buchheit R, Friedrich F, Kummer V, Scholler M (2019) Species identification of European forest pathogens of the genus Milesina (Pucciniales) using urediniospore morphology and molecular barcoding including M. woodwardiana sp. nov. MycoKeys 48: 1-40. https://doi.org/10.3897/mycokeys.48.30350
Figure 3 Deviations from the consensus ITS sequence of section Milesina. The first line indicates the nucleotide positions in base pairs, the second line the consensus sequence. The order of specimens is as shown in Figure 1. "Milesina sp" denotes specimens from Abiesalba. Deviations for single specimens can be found at 5 positions. All specimens of M.blechni and M.woodwardiana deviate at position 381 from M.whitei and kriegeriana.
Figure 2 from: Bubner B, Buchheit R, Friedrich F, Kummer V, Scholler M (2019) Species identification of European forest pathogens of the genus Milesina (Pucciniales) using urediniospore morphology and molecular barcoding including M. woodwardiana sp. nov. MycoKeys 48: 1-40. https://doi.org/10.3897/mycokeys.48.30350
Figure 2 Phylograms of supplementary barcodes. The nad6 phylogram is based on a 550 bp alignment, the 28S phylogram on a 680 bp alignment. The technical description is the same as for Figure 1. All Milesina specimens from Figure 1 were attempted to sequence for the supplementary barcodes. Only the shown specimens resulted in sequences. The non-Milesina species were altered depending on availability. No GenBank sequences were included and the genus Chrysomyxa was replaced by Pucciniastrum.
Figure 1 from: Bubner B, Buchheit R, Friedrich F, Kummer V, Scholler M (2019) Species identification of European forest pathogens of the genus Milesina (Pucciniales) using urediniospore morphology and molecular barcoding including M. woodwardiana sp. nov. MycoKeys 48: 1-40. https://doi.org/10.3897/mycokeys.48.30350
Figure 1 ITS Phylogram of 11 Milesina species (excluding M.magnusiana). The phylogram is based on a 733-bp alignment. A Maximum Likelihood (ML) tree is shown with support values for ML, Bayesian Inference (BI) and Neighbour Joining (NJ), in the order ML/BI/NJ. Support values are presented when they are above 50 (ML, NJ) or 0.5 (BI). The host is indicated in brackets. Milesina specimens without species designation (host Abiesalba) are not colour-coded. For comparison, several sequences were included from closely related genera. They were all newly generated within the GBOL project, except the GenBank sequences for Cronartium spp. The drawings on the right side present the typical arrangement of spines and germ pores (grey dots) on the Milesina urediniospores.
Supplementary material 2 from: Hernández-Triana LM, Brugman VA, Nikolova NI, Ruiz-Arrondo I, Barrero E, Thorne T, de Marco MF, Krüger A, Lumley S, Johnson N, Fooks AR (2019) DNA barcoding of British mosquitoes (Diptera, Culicidae) to support species identification, discovery of cryptic genetic diversity and monitoring invasive species. ZooKeys 832: 57-76. https://doi.org/10.3897/zookeys.832.32257
: Data type: molecular data
Supplementary material 1 from: Hernández-Triana LM, Brugman VA, Nikolova NI, Ruiz-Arrondo I, Barrero E, Thorne T, de Marco MF, Krüger A, Lumley S, Johnson N, Fooks AR (2019) DNA barcoding of British mosquitoes (Diptera, Culicidae) to support species identification, discovery of cryptic genetic diversity and monitoring invasive species. ZooKeys 832: 57-76. https://doi.org/10.3897/zookeys.832.32257
: Data type: molecular data
Figure 2 from: Hernández-Triana LM, Brugman VA, Nikolova NI, Ruiz-Arrondo I, Barrero E, Thorne T, de Marco MF, Krüger A, Lumley S, Johnson N, Fooks AR (2019) DNA barcoding of British mosquitoes (Diptera, Culicidae) to support species identification, discovery of cryptic genetic diversity and monitoring invasive species. ZooKeys 832: 57-76. https://doi.org/10.3897/zookeys.832.32257
Figure 2 Neighbor joining tree of COI DNA barcodes (658 bp) for mosquito species. A divergence of > 2% may be indicative of separate operational taxonomic units. Only bootstrap values higher than 70% are shown.
Figure 1 from: Hernández-Triana LM, Brugman VA, Nikolova NI, Ruiz-Arrondo I, Barrero E, Thorne T, de Marco MF, Krüger A, Lumley S, Johnson N, Fooks AR (2019) DNA barcoding of British mosquitoes (Diptera, Culicidae) to support species identification, discovery of cryptic genetic diversity and monitoring invasive species. ZooKeys 832: 57-76. https://doi.org/10.3897/zookeys.832.32257
Figure 1 Location of study sites in the United Kingdom. Key: 1 ADAS Arthur Rickwood; 2 Church Farm; 3 Coombelands Farms; 4 Elmley Nature Reserve; 5 Glendell Livery, Mill Lane; 6 Frimley; 7 Mudchute Farm; 8 Northney Farm, Hayling Island; 9 White Lodge, Bisley; 10 Bartley Heath; 11 Dee Marsh.
FIGURE 76 in The ant genus Rhopalomastix (Hymenoptera: Formicidae: Myrmicinae) in Southeast Asia, with descriptions of four new species from Singapore based on morphology and DNA barcoding
FIGURE 76. Distribution of R. javana and R. johorensis in Southeast Asia.
Figures 27-30 from: Linský M, Čiamporová-Zaťovičová Z, Čiampor Jr F (2019) Four new species of Hexanchorus Sharp from Ecuador (Coleoptera, Elmidae) with DNA barcoding and notes on the distribution of the genus. ZooKeys 838: 85-109. https://doi.org/10.3897/zookeys.838.33086
Figures 27-30 Aedeagi of Hexanchorus: 27H.rostratus sp. n. ventral view 28H.rostratus sp. n. lateral view 29H.shepardi sp. n. ventral view 30) H.shepardi sp. n. lateral view. Scale: 0.1 mm.
Figures 12-22 from: Linský M, Čiamporová-Zaťovičová Z, Čiampor Jr F (2019) Four new species of Hexanchorus Sharp from Ecuador (Coleoptera, Elmidae) with DNA barcoding and notes on the distribution of the genus. ZooKeys 838: 85-109. https://doi.org/10.3897/zookeys.838.33086
Figures 12-22 Hexanchorus ventral view: 12H.cordillierae male 13H.cordillierae female 14) H.virilis sp. n. male 15H.cfvirilis sp. n. female 16H.onoreionorei sp. n. male 17H.onoreionorei sp. n. female 18H.onoreisagittatus ssp. n. male 19H.onoreisagittatus ssp. n. female 20H.shepardi sp. n. male 21H.shepardi sp. n. female 22H.rostratus sp. n. male. Scale: 1 mm.
Figures 1-5 from: Linský M, Čiamporová-Zaťovičová Z, Čiampor Jr F (2019) Four new species of Hexanchorus Sharp from Ecuador (Coleoptera, Elmidae) with DNA barcoding and notes on the distribution of the genus. ZooKeys 838: 85-109. https://doi.org/10.3897/zookeys.838.33086
Figures 1-5 Hexanchorushabitus: 1H.cordillierae male 2H.cordillierae female 3H.virilis sp. n. male 4H.cfvirilis sp. n. female 5H.rostratus sp. n. male. Scale: 1 mm.
Figure 35 from: Linský M, Čiamporová-Zaťovičová Z, Čiampor Jr F (2019) Four new species of Hexanchorus Sharp from Ecuador (Coleoptera, Elmidae) with DNA barcoding and notes on the distribution of the genus. ZooKeys 838: 85-109. https://doi.org/10.3897/zookeys.838.33086
Figure 35 Maximum likelihood analysis tree based on 625 bp barcoding fragment of COI with species delimitation according to different approaches used. Numbers next to branches represent Bootstrap support (ML).
Figure 36 from: Linský M, Čiamporová-Zaťovičová Z, Čiampor Jr F (2019) Four new species of Hexanchorus Sharp from Ecuador (Coleoptera, Elmidae) with DNA barcoding and notes on the distribution of the genus. ZooKeys 838: 85-109. https://doi.org/10.3897/zookeys.838.33086
Figure 36 Distribution map of all known Hexanchorus species. (top down triangle – known species, top up triangle – new species, question mark – doubtful distribution).
Supplementary material 1 from: Linský M, Čiamporová-Zaťovičová Z, Čiampor Jr F (2019) Four new species of Hexanchorus Sharp from Ecuador (Coleoptera, Elmidae) with DNA barcoding and notes on the distribution of the genus. ZooKeys 838: 85-109. https://doi.org/10.3897/zookeys.838.33086
: Data type: Genetic distances
Figures 6-11 from: Linský M, Čiamporová-Zaťovičová Z, Čiampor Jr F (2019) Four new species of Hexanchorus Sharp from Ecuador (Coleoptera, Elmidae) with DNA barcoding and notes on the distribution of the genus. ZooKeys 838: 85-109. https://doi.org/10.3897/zookeys.838.33086
Figures 6-11 Hexanchorushabitus: 6H.onoreionorei sp. n. male 7H.onoreionorei sp. n. female 8H.onoreisagittatus ssp. n. male 9H.onoreisagittatus ssp. n. female 10H.shepardi sp. n. male 11H.shepardi sp. n. female. Scale: 1 mm.
Figures 31-34 from: Linský M, Čiamporová-Zaťovičová Z, Čiampor Jr F (2019) Four new species of Hexanchorus Sharp from Ecuador (Coleoptera, Elmidae) with DNA barcoding and notes on the distribution of the genus. ZooKeys 838: 85-109. https://doi.org/10.3897/zookeys.838.33086
Figures 31-34 Aedeagi of Hexanchorus: 31H.onoreionorei sp. n. ventral view 32H.onoreionorei sp. n. lateral view 33H.onoreisagittatus ssp. n. ventral view 34H.onoreisagittatus ssp. n. lateral view. Scale: 0.1 mm.
Figures 23-26 from: Linský M, Čiamporová-Zaťovičová Z, Čiampor Jr F (2019) Four new species of Hexanchorus Sharp from Ecuador (Coleoptera, Elmidae) with DNA barcoding and notes on the distribution of the genus. ZooKeys 838: 85-109. https://doi.org/10.3897/zookeys.838.33086
Figures 23-26 Aedeagi of Hexanchorus: 23H.cordillierae ventral view 24H.cordillierae lateral view 25H.virilis sp. n. ventral view 26H.virilis sp. n. lateral view. Scale: 0.1 mm.
FIGURE 8 in Two new species of treefrog (Pelodrydidae: Litoria) from southern New Guinea elucidated by DNA barcoding
FIGURE 8. Distribution of Litoria vivissimia sp. nov., Litoria pronimia and Litoria pinocchio.
FIGURE 1 in Two new species of treefrog (Pelodrydidae: Litoria) from southern New Guinea elucidated by DNA barcoding
FIGURE 1. Holotype of Litoria pterodactyla sp. nov. SAMA R65030 in preservative. Scale bar 10 mm.
Supplementary material 2 from: Raupach MJ, Hannig K, Morinière J, Hendrich L (2019) About Notiophilus Duméril, 1806 (Coleoptera, Carabidae): Species delineation and phylogeny using DNA barcodes. Deutsche Entomologische Zeitschrift 66(1): 63-73. https://doi.org/10.3897/dez.66.34711
: Data type: Substitution saturation plot
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