Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
10,735
datasets available to search
ShareScore release 0.9.0
Dataset results
10,735 results for “dependability”
Data from: Age, state, environment and season dependence of senescence in body mass
[No abstract entered]
LRRC8A promotes Glaesserella parasuis cytolethal distending toxin-Induced p53-dependent apoptosis in NPTr cells
<p>The rawdata supporting the results or analyses</p>
Context-dependent selectivity to natural scenes in the retina
<p>Here a sample dataset to replicate the study published in https://www.biorxiv.org/content/10.1101/2021.10.01.462157v1</p>
Data from: A generalist bird exhibits site-dependent resource selection
<p>Quantifying resource selection (an organism's disproportionate use of available resources) is essential to infer habitat requirements of a species, develop management recommendations, predict species responses to changing conditions, and improve our understanding of the processes that underlie ecological patterns. Because study sites, even within the same region, can differ in both the amount and the arrangement of cover types, our objective was to determine whether proximal sites can yield markedly different resource selection results for a generalist bird, northern bobwhite (<i>Colinus virginianus</i>). We used five years of telemetry locations and newly developed land cover data at two, geographically distinct but relatively close sites in the south central semi-arid prairies of North America. We fit a series of generalized linear mixed models and used an information-theoretic model comparison approach to identify and compare resource selection patterns at each site. We determined that the importance of different cover types to northern bobwhite is site-dependent on relatively similar and nearby sites. Specifically, whether bobwhite selected for shrub cover and whether they strongly avoided trees, depended on the study site in focus. Additionally, the spatial scale of selection was nearly an order of magnitude different between the cover types. Our study demonstrates that—even for one of the most intensively studied species in the world—we may oversimplify resource selection by using a single study site approach.<i> </i>Managing the tradeoffs between practical, generalized conclusions and precise but complex conclusions is one of the central challenges in applied ecology. However, we caution against setting recommendations for broad extents based on information gathered at small extents, even for a generalist species at adjacent sites. Before extrapolating information to areas beyond the data collected, managers should account for local differences in the availability, arrangement, and scaling of resources.</p>
Data from: Correlated variability in primate superior colliculus depends on functional class
<p><span>Information read-out from populations of neurons depends strongly on the correlated variability within a population, termed r<sub>SC </sub>(spike count correlations). Traditionally, r<sub>SC</sub> is reported as a single value for a population of neurons comprising a brain area. However, single values, like summary statistics, can obscure underlying features of the constituent elements. We predict that in brain areas consisting of distinct subpopulations of neurons, different subpopulations will exhibit distinct levels of r<sub>SC</sub> not captured by the population r<sub>SC</sub>. We tested this idea by recording from neurons in macaque superior colliculus (SC), a structure that contains several subpopulations (or classes) of neurons based on function. We found that during guided saccade tasks, different classes of neurons exhibited differing degrees of r<sub>SC</sub>, which could not be attributed to variations in behavior. Neurons belonging to the "Delay" class displayed a particularly high r<sub>SC</sub>, especially during the delay epoch of tasks that relied on visual working memory. Our finding that r<sub>SC</sub> depends on functional class, as well as the type of task, demonstrate the importance of taking functional subpopulations into account when attempting to model or infer population coding principles in primate SC, or other areas of the brain that contain subpopulations supporting specific functions.</span></p>
Supplementary dataset for Expanded sequence space of radical S-adenosylmethionine-dependent enzyme involved in post-translational macrocyclization
<p>Supplementary dataset for <a href="https://www.researchsquare.com/article/rs-1789925/v1">Expanded sequence space of radical S-adenosylmethionine-dependent enzyme involved in post-translational macrocyclization</a></p> <p>Supporting Information Dataset 1: Logo sequences of 500 clusters in precursor SSN.</p> <p>Supporting Information Dataset 2: 199 cyclophane precursor from actinobacteria</p> <p>Supporting Information Dataset 3: Distribution of different enzymes adjacent to small peptides</p> <p>Supporting Information Dataset 4: Cross-comparison analysis of antiSMASH and PRISM-RiPP-predicted rSAM maturase</p> <p>Supporting Information Dataset 5: mmseq2 output of all identified precursors.</p>
Supplementary material 3 from: Bernardo-Madrid R, González-Moreno P, Gallardo B, Bacher S, Vilà M (2022) Consistency in impact assessments of invasive species is generally high and depends on protocols and impact types. In: Giannetto D, Piria M, Tarkan AS, Zięba G (Eds) Recent advancements in the risk screening of freshwater and terrestrial non-native species. NeoBiota 76: 163-190. https://doi.org/10.3897/neobiota.76.83028
Figure S1
Supplementary material 2 from: Bernardo-Madrid R, González-Moreno P, Gallardo B, Bacher S, Vilà M (2022) Consistency in impact assessments of invasive species is generally high and depends on protocols and impact types. In: Giannetto D, Piria M, Tarkan AS, Zięba G (Eds) Recent advancements in the risk screening of freshwater and terrestrial non-native species. NeoBiota 76: 163-190. https://doi.org/10.3897/neobiota.76.83028
Impact assessments and function to calculate G coefficient
Supplementary material 1 from: Bernardo-Madrid R, González-Moreno P, Gallardo B, Bacher S, Vilà M (2022) Consistency in impact assessments of invasive species is generally high and depends on protocols and impact types. In: Giannetto D, Piria M, Tarkan AS, Zięba G (Eds) Recent advancements in the risk screening of freshwater and terrestrial non-native species. NeoBiota 76: 163-190. https://doi.org/10.3897/neobiota.76.83028
Tables S1–S13
Antibiotic tolerance indicative for persistence is pervasive among clinical Streptococcus pneumoniae isolates and shows strong condition dependence - dataset
<p>The dataset is linked to the article entitled 'Antibiotic tolerance indicative for persistence is pervasive among clinical <em>Streptococcus pneumoniae</em> isolates and shows strong condition dependence' with following abstract. </p> <p><em>Streptococcus pneumoniae</em> is an important human pathogen, being one of the most common causes of community-acquired pneumonia and otitis media. Antibiotic resistance in <em>S. pneumoniae</em> is an emerging problem as it depletes our arsenal of effective drugs. In addition, persistence also contributes to the antibiotic crisis in many other pathogens, yet, in <em>S. pneumonia</em>e little is known about antibiotic-tolerant persisters and robust experimental means are lacking. Persister cells are phenotypic variants that exist as a subpopulation within a clonal culture. Being tolerant to lethal antibiotics, they underly the chronic nature of a variety of infections and even help in acquiring genetic resistance. Here, we set out to identify and characterize persistence in <em>S. pneumoniae. </em>Specifically, we followed different strategies to overcome the self-limiting nature of<em> S. pneumoniae </em>as confounding factor in the prolonged monitoring of antibiotic survival needed to study persistence. In optimized conditions, we identified genuine persisters in various growth phases and for four relevant antibiotics through biphasic survival dynamics and heritability assays. Finally, we detected a high variety in antibiotic survival levels across a diverse collection of <em>S. pneumoniae</em> clinical isolates, which assumes that a high natural diversity in persistence is widely present in <em>S. pneumoniae</em>. Collectively, this proof-of-concept significantly progresses the understanding of the importance of antibiotic persistence in<em> S. pneumoniae</em> infections which will set stage for characterizing its relevance to clinical outcomes and advocates for increased attention to the phenotype in both fundamental and clinical research.</p>
Data for: Effects of biotic interactions on plant fecundity depend on spatial and functional structure of communities and time since disturbance
<p><span>Biotic interactions in plant communities affect individual fitness and community dynamics. Interactions between plants vary in space, over time and with organisational complexity. Yet it is challenging to quantify temporal, spatial and functional determinants of different types of interactions between long-lived perennial plant species and their effect on lifetime fecundity. We studied how plant-plant, pollinator- and seed predator-mediated interactions affect year-to-year variation in three fecundity components (cone production, seed set and seed survival) during post-fire recovery. Age-stratified data on the three fecundity components were collected in 19 even-aged communities comprising 20 serotinous <em>Protea </em>shrub species in the South African Fynbos. We analyse data on these fecundity components with neighbourhood models to infer the sign and strength of interactions throughout post-disturbance recovery, the neighbour plant traits that shape them and the spatial scale at which interactions take place. For each fecundity component, these models describe how neighbourhood effects change over time and with spatial distance between plants. For each focal plant, we then predicted neighbourhood effects on individual fecundity components and cumulative reproductive output at different post-fire stand ages. Competitive effects on cone production and seed set increased with post-fire stand age as biomass and floral resources for pollinators build up. In contrast, neighbourhood effects on seed survival were weak throughout post-disturbance recovery. Plant-plant interactions were shaped by neighbour traits related to resource acquisition, whereas animal-mediated interactions depended on neighbour traits related to resource availability for pollinators and seed predators. The spatial scale of the interactions increased from plant-plant over predator-mediated to pollinator-mediated interactions. The joint effect of these interactions on cumulative reproductive output caused the proportion of focal plants experiencing competition to increase with time since fire. We show that temporal changes in biotic interactions throughout post-disturbance recovery of perennial plant communities depend on functional traits and can be integrated to neighbourhood effects on lifetime fecundity. Studying the temporal, spatial and functional determinants of neighbourhood effects on lifetime fecundity is important for predicting not only individual plant fitness, but also population and community dynamics in changing environments. </span></p>
Variable and orbital-dependent spin-orbit field orientations in a InSb double quantum dot characterized via dispersive gate sensing
<p>Data and Codes for the manuscript.</p>
Supplementary material 1 from: Jacquemin F, Violle C, Rasmont P, Dufrêne M (2017) Mapping the dependency of crops on pollinators in Belgium. One Ecosystem 2: e13738. https://doi.org/10.3897/oneeco.2.e13738
Agricultural data and dependency ratio of crops on insect pollination used at Belgium scale in 2010
Figure 2 from: Brunke A, Smetana A, Carruthers-Lay D, Buffam J (2017) Revision of Hemiquedius Casey (Staphylinidae, Staphylininae) and a review of beetles dependent on beavers and muskrats in North America. ZooKeys 702: 27-43. https://doi.org/10.3897/zookeys.702.19936
Figure 2 - Hemiquedius ferox (Casey) (A, B, E); H. infinitus Brunke and Smetana (C, D, G); and H. castoris Brunke and Smetana (F). Aedeagus in parameral view (A, C), median lobe in lateral view (B, D), paramere (E), left portion of paramere with peg setae (F, G). Scale bars: 0.5 mm (A–E), 0.25 mm (F–G).
Figure 1 from: Brunke A, Smetana A, Carruthers-Lay D, Buffam J (2017) Revision of Hemiquedius Casey (Staphylinidae, Staphylininae) and a review of beetles dependent on beavers and muskrats in North America. ZooKeys 702: 27-43. https://doi.org/10.3897/zookeys.702.19936
Figure 1 - Habitus of Hemiquedius castoris Brunke and Smetana (A); H. castoris, elytra and scutellum (B); H. infinitus Brunke and Smetana, elytra and scutellum (C); H. ferox (Casey), male sternite VIII (D); H. castoris, male sternite VIII (E). Scale bars: 2 mm (A); 1 mm (B–E).
Figure 4 from: Brunke A, Smetana A, Carruthers-Lay D, Buffam J (2017) Revision of Hemiquedius Casey (Staphylinidae, Staphylininae) and a review of beetles dependent on beavers and muskrats in North America. ZooKeys 702: 27-43. https://doi.org/10.3897/zookeys.702.19936
Figure 4 - Distribution of H. castoris Brunke and Smetana, Hemiquedius ferox (Casey), and H. infinitus Brunke and Smetana. White markers indicate state only records (placed at the centre of each state) in the absence of more detailed data.
Figure 3 from: Brunke A, Smetana A, Carruthers-Lay D, Buffam J (2017) Revision of Hemiquedius Casey (Staphylinidae, Staphylininae) and a review of beetles dependent on beavers and muskrats in North America. ZooKeys 702: 27-43. https://doi.org/10.3897/zookeys.702.19936
Figure 3 - Pronotum shape in Hemiquedius species (n = 10, 5 of each sex): Hemiquedius castoris Brunke and Smetana (A); H. infinitus Brunke and Smetana (B) and H. ferox (Casey) (C).
The role of Gper1 in colorectal cancer progression depends on gender and p53 functionality
Open the record for dataset details and reuse information.
Carbon neutrality transitions from government-dependent towards free trade autonomy renewable markets with grid-demand-storage synergies
Open the record for dataset details and reuse information.
Data and scripts (1) for Storkey et al, "Resolution dependence of interlinked Southern Ocean biases in global coupled HadGEM3 models", GMD (2024)
<p><br> ================================================================<br> Data and scripts for producing plots from Storkey et al (2024):<br> "Resolution dependence of interlinked Southern Ocean biases in<br> global coupled HadGEM3 models"<br> ================================================================</p> <p>The plots in the paper consist of 10-year mean fields from the third <br>decade of the spin up and timeseries of scalar quantities for the first<br>150 years of the spin up. The data to produce these plots are stored<br>in the MEANS_YEARS_21-30 and TIMESERIES_DATA directories respectively.</p> <p>Note that due to the size limit on records on Zenodo, the 10-year mean <br>output from the N216-ORCA12 integration has been stored as a separate<br>record.</p> <p>Scripts to produce the plots are in SCRIPT, with section definitions<br>in SECTIONS. Bespoke plotting scripts are included in SCRIPT. They use<br>python 3 including the Matplotlib, Iris and Cartopy packages. The <br>plotting of the timeseries data used the Marine_Val VALSO-VALTRANS <br>package which is available here:</p> <p> https://github.com/JMMP-Group/MARINE_VAL/tree/main/VALSO-VALTRANS </p> <p>Much of the processing of the model output data was performed with the<br>CDFTools package, which is available here:</p> <p> https://github.com/meom-group/CDFTOOLS</p> <p>and the NCO package:</p> <p> https://web.mit.edu/course/13/13.715/nco-2.8.1/doc/</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.