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Fig. 13 in Integrative taxonomy of five astome ciliates (Ciliophora, Astomatia) isolated from earthworms in Central Europe
Fig. 13. Multidimensional scaling of 33 individuals based on pairwise Gower's similarities calculated from 16 quantitative features, a single qualitative character and two derived ratios.
Fig. 14 in Integrative taxonomy of five astome ciliates (Ciliophora, Astomatia) isolated from earthworms in Central Europe
Fig. 14. Small subunit rRNA gene phylogenetic tree showing systematic positions of astome ciliates isolated from lumbricid earthworms. Posterior probabilities for Bayesian Inference (BI) and bootstrap values for Maximum Likelihood (ML) were mapped onto the 50%-majority rule Bayesian consensus tree. Dashes indicate ML bootstrap values below 50%. The phylogenetic tree suggests that the evolution of endosymbiotic astome ciliates has proceeded through a specialization to various ecological and systematic groups of their host organisms. Sequences in bold face were obtained during this study. For specimen codes and further details, see Table 4. The scale bar denotes eight substitutions per one hundred nucleotide positions.
Fig. 11 in Integrative taxonomy of five astome ciliates (Ciliophora, Astomatia) isolated from earthworms in Central Europe
Fig. 11. Anoplophrya vulgaris de Puytorac, 1954 (A–C) and Anoplophrya nodulata (Dujardin, 1841) (D–E), Slovak specimens in vivo. A–B. Ventral views, showing the nuclear apparatus, the arrangement of contractile vacuoles (arrowheads) and the somatic ciliary pattern. Arrow marks the apical suture. C. Detail of the anterior body region, showing the apical suture (arrow) and the meridional ciliary rows composed of very narrowly arranged basal bodies. D–E. Optical sections, showing the general body organization. The body is ovate to broadly fusiform with both ends rounded. The macronucleus is rodlike with slightly irregular surface. There are two rows of contractile vacuoles (arrowheads). Scale bars: A–B, D–E = 50 µm; C = 20 µm.
Fig. 12 in Integrative taxonomy of five astome ciliates (Ciliophora, Astomatia) isolated from earthworms in Central Europe
Fig. 12. Anoplophrya nodulata (Dujardin, 1841), Slovak specimens in vivo. A–B. Ventral views, showing the general body organization. The body is ovate with both ends rounded. The macronucleus is rod-like and extends through the cell's midline. In dying cells, the macronucleus diminishes in size leaving behind a conspicuous hyaline envelope. There are two rows of contractile vacuoles, extending right and left of the macronucleus. C. Lateral view, showing the distinctly dorsoventrally flattened body. Arrowheads denote the right row of contractile vacuoles. Scale bars: 50 µm.
Fig. 10 in Integrative taxonomy of five astome ciliates (Ciliophora, Astomatia) isolated from earthworms in Central Europe
Fig. 10. Anoplophrya vulgaris de Puytorac, 1954, Slovak specimens in vivo. A. Semi-schematic diagram of the ventral side, showing the nuclear apparatus, the arrangement of contractile vacuoles (arrowheads) and the somatic ciliary pattern. B–C. Details of the anterior body pole and the posterior body region, showing the course of the somatic kineties. Arrow denotes the apical suture. D–F. Variability of body shape and size as well as of the contractile vacuole and nuclear apparatus. Drawn to scale. Scale bars: 50 µm.
Fig. 8 in Integrative taxonomy of five astome ciliates (Ciliophora, Astomatia) isolated from earthworms in Central Europe
Fig. 8. Anoplophrya lumbrici (Schrank, 1803), Slovak specimens in vivo. A. Semi-schematic diagram of the ventral side, showing the nuclear apparatus, the arrangement of contractile vacuoles (arrowheads) and the somatic ciliary pattern. B–C. Details of the anterior and posterior body pole, showing the apical and the terminal suture. D. In dying cells, the macronucleus diminishes in size leaving behind a conspicuous hyaline envelope. The macronucleus sometimes also fragments within the envelope in postmortem cells. E–I. Variability of body shape and size as well as of the contractile vacuole and nuclear apparatus. The micronucleus is situated conspicuously far away from the macronucleus, namely, near the middle of the left body margin and always opposite to the row of contractile vacuoles. Drawn to scale. Scale bars: A, E–I = 50 µm; D = 20 µm.
Fig. 9 in Integrative taxonomy of five astome ciliates (Ciliophora, Astomatia) isolated from earthworms in Central Europe
Fig. 9. Anoplophrya lumbrici (Schrank, 1803), Slovak specimens in vivo. A, D. Optical sections, showing the general body organization. The body is elliptical with both ends rounded. The macronucleus is rodlike and extends through the cell's midline. The micronucleus is situated conspicuously far away from the macronucleus, namely, near the middle of the left body margin and always opposite to the row of contractile vacuoles (arrowheads). B. Ventral view, showing the somatic ciliary pattern. Arrowheads denote the contractile vacuoles which originate by fusion of three to five vesicules. C. In dying cells, the macronucleus diminishes in size leaving behind a conspicuous hyaline envelope. The macronucleus sometimes also fragments within the envelope in postmortem cells. E. Frontal view, showing the apical suture. Scale bars: A–B, D = 50 µm; C, E = 20 µm.
Figure 3 from: Gonçalves MFM, Vicente TFL, Esteves AC, Alves A (2019) Neptunomyces aureus gen. et sp. nov. (Didymosphaeriaceae, Pleosporales) isolated from algae in Ria de Aveiro, Portugal. MycoKeys 60: 31-44. https://doi.org/10.3897/mycokeys.60.37931
Figure 3 Phylogenetic relationships of Didymosphaeriaceae species based on ITS and tef1-α sequence data and inferred using the Maximum Likelihood method under the Kimura 2-parameter model. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site and rooted to Cucurbitaria berberidis (CBS 130007) and Coniothyrium palmarum (CBS 400.71). Bootstrap values (> 70%) are shown at the nodes. Ex-type strains are in bold and the isolates from the current study are in blue.
Supplementary material 1 from: Gonçalves MFM, Vicente TFL, Esteves AC, Alves A (2019) Neptunomyces aureus gen. et sp. nov. (Didymosphaeriaceae, Pleosporales) isolated from algae in Ria de Aveiro, Portugal. MycoKeys 60: 31-44. https://doi.org/10.3897/mycokeys.60.37931
: Data type: species data
Figure 4 from: Gonçalves MFM, Vicente TFL, Esteves AC, Alves A (2019) Neptunomyces aureus gen. et sp. nov. (Didymosphaeriaceae, Pleosporales) isolated from algae in Ria de Aveiro, Portugal. MycoKeys 60: 31-44. https://doi.org/10.3897/mycokeys.60.37931
Figure 4 Neptunomyces aureus (MUM 19.38). A, B Colony after 2 weeks at 25 °C on PDA (obverse and reverse) C, D colony after 2 weeks at 25 °C on MEA (obverse and reverse) E, F colony after 2 weeks at 25 °C on OA (obverse and reverse) G, H conidiomata after 1 month at 25 °C on pine needles and PDA. I, J conidiogenous cells K conidia. Scale bars: 2.5 μm.
Figure 2 from: Gonçalves MFM, Vicente TFL, Esteves AC, Alves A (2019) Neptunomyces aureus gen. et sp. nov. (Didymosphaeriaceae, Pleosporales) isolated from algae in Ria de Aveiro, Portugal. MycoKeys 60: 31-44. https://doi.org/10.3897/mycokeys.60.37931
Figure 2 Phylogenetic relationships of Didymosphaeriaceae species based on ITS and tub2 sequence data and inferred using the Maximum Likelihood method under the Kimura 2-parameter model. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site and rooted to Cucurbitaria berberidis (CBS 130007) and Coniothyrium palmarum (CBS 400.71). Bootstrap values (> 70%) are shown at the nodes. Ex-type strains are in bold and the isolates from the current study are in blue.
Figure 1 from: Gonçalves MFM, Vicente TFL, Esteves AC, Alves A (2019) Neptunomyces aureus gen. et sp. nov. (Didymosphaeriaceae, Pleosporales) isolated from algae in Ria de Aveiro, Portugal. MycoKeys 60: 31-44. https://doi.org/10.3897/mycokeys.60.37931
Figure 1 Phylogenetic relationships of Didymosphaeriaceae species based on ITS sequence data and inferred using the Maximum Likelihood method under the Kimura 2-parameter model. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site and rooted to Cucurbitaria berberidis (CBS 130007) and Coniothyrium palmarum (CBS 400.71). Bootstrap values (> 70%) are shown at the nodes. Ex-type strains are in bold and the isolates from the current study are in blue.
Figure 1 in Ants (Hymenoptera: Formicidae) of the Parque Estadual São Camilo, an isolated Atlantic Forest remnant in western Paraná, Brazil
Figure 1. Map showing the collection points indicated by yellow circles at Parque Estadual São Camilo, Palotina, Paraná state, Southern Brazil. The photos show the main environments explored, and the green filled polygons depict the vegetation cover of the park. Photos: N. Ladino, 8–11/12/2020.
Figure 11 in Scopaeus saotomensis spec. nov., a flightless rove beetle from the Island of São Tomé (Coleoptera: Staphylinidae: Paederinae: Lathrobiini) - Isolation and adaptation in a dark, humid, tropical forest environment
Figure 11. The pitfall trap (arrow) in situ at Lagoa Amélia illustrating the exact collecting spot for Scopaeus saotomensis.
Fig. 8 in Morphological Description of Telaepolella tubasferens n. g. n. sp., Isolate ATCC© 50593™, a Filose Amoeba in the Gracilipodida, Amoebozoa
Fig. 8. Fine structure of the cyst wall. A – an early stage of cyst wall development shows the electron dense inner layer (1) and closely apposed finely fibrillar outer layer (2) surrounded by a mucoid thicker layer (3); B – a more mature cyst wall with undulating electron dense inner layer (1), thickened fibrous outer layer (2) consisting of a proximal finely fibrillar layer and a more distal denser layer, surrounded by a much thickened mucoid layer (3) containing organic debris particles and occasional bacteria (B). Scale bars in A, B: 1 µm.
Fig. 6 in Morphological Description of Telaepolella tubasferens n. g. n. sp., Isolate ATCC© 50593™, a Filose Amoeba in the Gracilipodida, Amoebozoa
Fig. 6. Phase contrast micrographs of T. tubasferens cysts. A – typical round, thin-walled cysts; B – typical irregular cysts, walls are even thinner than in spherical cysts; C – thick-walled, spherical cysts, note that besides the wall being thicker, there is a space between the cell and the cyst wall; D, E – an irregular shaped cyst from which the amoeba excysted successfully; F, G – a typical combination of cysts that come from a single amoeba, one irregular cyst surrounded by two thin or thick walled cysts (1 indicates an irregular cyst, 2 indicates the inner part of a thick walled cyst and 3 indicates the wall); H, I and J – amoebae exiting their cysts, cysts are indicated by the white arrow, amoebae are indicated by the black arrow. Scale bar for all images: 20 µm.
Fig. 5 in Morphological Description of Telaepolella tubasferens n. g. n. sp., Isolate ATCC© 50593™, a Filose Amoeba in the Gracilipodida, Amoebozoa
Fig. 5. Phase contrast micrographs of floating form of T. tubasferens. A – immediately before floating; B, C, D – actively floating. In C, there are three separate floaters, which united in the water column, apparently the cytoplasm has not joined. In D there are two separate floating forms. E–I – phase contrast micrographs of a floating T. tubasferens purposely flattened for observation. These are sequential images of the initial moments after forceful flattening. The amoeba clearly shows lobose pseudopods (all images) and the nuclei gathered at the center, especially visible in I. Scale bar for all images: 20 µm.
Text-fig. 9A. Eospondylus cf. primigenius (STÜRTZ) "Červený lom" quarry near Praha-Klukovice, Loděnice Limestone, Lower Devonian, Pragian, NM L 36910, x 40. Left lateral plate. Inner surface view from below. The spine ridge faces distally (posteriorly) and has blunt pointed denticles. Anterior and parallel to denticled part of spine ridge is internal rounded ridge. Ventrolaterally ossicle has slit-like sockets for groove spines. in Isolated Ossicles Of The Family Eospondylidae Spencer Wright, 1966, In The Lower Devonian Of Bohemia (Czech Republic) And Correction Of The Systematic Position Of Eospondylid Brittlestars (Echinodermata: Ophiuroidea: Oegophiurida)
Text-fig. 9A. Eospondylus cf. primigenius (STÜRTZ) "Červený lom" quarry near Praha-Klukovice, Loděnice Limestone, Lower Devonian, Pragian, NM L 36910, x 40. Left lateral plate. Inner surface view from below. The spine ridge faces distally (posteriorly) and has blunt pointed denticles. Anterior and parallel to denticled part of spine ridge is internal rounded ridge. Ventrolaterally ossicle has slit-like sockets for groove spines.
Text-fig. 7A. Eospondylus primigenius (STÜRTZ) Bundenbach, Eschenbach-Bocksberg quarry, Lower Devonian, Lower Emsian (Zlichovian), Hunsrück Slate, BMNH E3353, x 3. Extreme horizontal arm bending: Arm loop with half-twist in Hunsrück Slate. In the proximal part of the arm the view is of the upper surface, but after the loop the view is of the lower surface. Seven arm segments (six articulations) bend 180 degrees, indicating 30 degrees of bend per articulation. in Isolated Ossicles Of The Family Eospondylidae Spencer Wright, 1966, In The Lower Devonian Of Bohemia (Czech Republic) And Correction Of The Systematic Position Of Eospondylid Brittlestars (Echinodermata: Ophiuroidea: Oegophiurida)
Text-fig. 7A. Eospondylus primigenius (STÜRTZ) Bundenbach, Eschenbach-Bocksberg quarry, Lower Devonian, Lower Emsian (Zlichovian), Hunsrück Slate, BMNH E3353, x 3. Extreme horizontal arm bending: Arm loop with half-twist in Hunsrück Slate. In the proximal part of the arm the view is of the upper surface, but after the loop the view is of the lower surface. Seven arm segments (six articulations) bend 180 degrees, indicating 30 degrees of bend per articulation.
Text-fig. 1. Eospondylus primigenius (STÜRTZ) Bundenbach, Eschenbach-Bocksberg quarry, Lower Devonian, Lower Emsian (Zlichovian), Hunsrück Slate, specimens PWL 1996 57LS (NMM) top image (A) x 1.5, and PWL 1996 66LS (NMM) bottom image (B) x 1.7. Specimen with rays bent into strong curves. Such flexibility and attitudes of rays differentiate the behavioral ecology of Eospondylus from all other Hunsrück Slate ophiuroids. Delicateness of the top specimen and robustness of the bottom specimen is perhaps the combined result of real phenotypic differences, differences of preserved detail, and differences of distortion of the rock. [courtesy of Herbert Lutz and Thomas Engel; photos by Alexander Glass]. in Isolated Ossicles Of The Family Eospondylidae Spencer Wright, 1966, In The Lower Devonian Of Bohemia (Czech Republic) And Correction Of The Systematic Position Of Eospondylid Brittlestars (Echinodermata: Ophiuroidea: Oegophiurida)
Text-fig. 1. Eospondylus primigenius (STÜRTZ) Bundenbach, Eschenbach-Bocksberg quarry, Lower Devonian, Lower Emsian (Zlichovian), Hunsrück Slate, specimens PWL 1996 57LS (NMM) top image (A) x 1.5, and PWL 1996 66LS (NMM) bottom image (B) x 1.7. Specimen with rays bent into strong curves. Such flexibility and attitudes of rays differentiate the behavioral ecology of Eospondylus from all other Hunsrück Slate ophiuroids. Delicateness of the top specimen and robustness of the bottom specimen is perhaps the combined result of real phenotypic differences, differences of preserved detail, and differences of distortion of the rock. [courtesy of Herbert Lutz and Thomas Engel; photos by Alexander Glass].
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.