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13,587 results for “specification”
Data from: Tetraconatan phylogeny with special focus on Malacostraca and Branchiopoda—Highlighting the strength of taxon-specific matrices in phylogenomics
Understanding the evolution of Tetraconata or Pancrustacea —the clade that includes crustaceans and insects—requires a well-resolved hypothesis regarding the relationships within and among its constituent taxa. Herein, we assembled a taxon-rich phylogenomic data set focusing on crustacean lineages based solely on genomes and new-generation Illumina-generated transcriptomes, including 89 representatives of Tetraconata. This constitutes the first phylogenomic study specifically addressing internal relationships of Malacostraca (with 26 species included) and Branchiopoda (36 species). Seven matrices comprising 81 to 684 orthogroups and 17,690 to 242,530 amino acid positions were assembled and analysed under five different analytical approaches. To maximize gene occupancy and to improve resolution, taxon-specific matrices were designed for Malacostraca and Branchiopoda. Key tetraconatan taxa (i.e., Oligostraca, Multicrustacea, Branchiopoda, Malacostraca, Thecostraca, Copepoda, Hexapoda) were monophyletic and well supported. Within Branchiopoda Phyllopoda, Diplostraca, Cladoceromorpha and Cladocera were monophyletic. Within Malacostraca the clades Eumalacostraca, Decapoda and Reptantia were well supported. Recovery of Caridoida or Peracarida was highly depending on the analysis for the complete matrix but were consistently recovered monophyletic in the malacostracan-specific matrix. From such examples, we demonstrate that taxon-specific matrices and particular evolutionary models and analytical methods, namely CAT-GTR and Dayhoff recoding, outperform other approaches in resolving certain recalcitrant nodes in phylogenomic analyses.
Data from: Species-specific plant-soil feedback effects on above-ground plant-insect interactions
1. Plant–soil feedback (PSF) effects on plant performance strongly depend on the plant species that conditioned the soil. Recent studies have shown that PSF can change above-ground plant–insect interactions via soil-mediated changes in plant quality, but whether these effects depend on species-specific soil conditioning is unknown. We examined how PSF effects of several plant species influence above-ground plant–aphid interactions. 2. We grew ragwort (Jacobaea vulgaris) in field soil conditioned specifically by 10 plant species, belonging to three functional groups (grasses, forbs and legumes), in a multispecies mixture of the conditioned soils and in control (unconditioned) field soil. We measured plant biomass, concentrations of primary (amino acids) and secondary (pyrrolizidine alkaloids) metabolites in phloem exudates, and performance of the generalist aphid Brachycaudus cardui and the specialist Aphis jacobaeae. 3. We observed that plant species, via species-specific effects on soil fungal communities, exerted unique plant–soil effects on J. vulgaris biomass, amino acid concentrations in phloem exudates and aphid performance. The direction and magnitude of the species-specific PSF effects on aphid performance differed between both aphid species. PSF effects on soil fungal communities, plant biomass and A. jacobaeae performance also differed between grasses, forbs and legumes, with soil conditioning by forbs resulting in lowest plant biomass and aphid performance. 4. Synthesis. Our study provides novel evidence that PSF effects on above-ground plant–insect interactions are highly species specific. Our results add a new dimension to the rapidly developing research fields of PSF and above-below-ground interactions, and highlights that these fields are tightly linked.
GIRLS TO MARRIAGE, FAMILY, SOCIETY SPECIFIC CHARACTERISTICS OF PREPARATION
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Regulation of gastric acid secretion in situ by an endogenous activator protein: Studies with activator-specific antibody
Monospecific polyclonal antibody was raised against a homogenous preparation of endogenous activator protein (HAF) for the gastric H+,K+-ATPase system. Antibody was used to assess the regulatory role of the HAF in gastric acid secretion by isolated rabbit glands in situ. Immunohistochemical studies revealed aredistribution of theHAFtowards discrete intracellular zones following stimulation of the glands with histamine. The antibody, when inserted into the stimulated gastric glands by digitonin permeabilization, could effectively block the acid forming ability of the cells. The data offers, for the first time, some concrete in situ evidence for the role of the HAF as an intracellular regulator of gastric H+ transport .
Specific induction of TSLP by the viral RNA analogue poly(I:C) in primary epithelial cells derived from nasal polyps
<p>Database with files used for generating the result in this manuscript.</p>
ASD specific data set An. aging
<p>These are the *.asd specific files from the spectrometer.</p>
Age-Specific Mortality Climate Impact Distributions
<p>Percentiles of age-specific mortality impacts due to climate change, organized by level of aggregation, climate scenario, and time period.</p> <p>Mortality impacts are estimated by applying future climate data to dose-response functions of mortality rates for specific age bands.</p> <p>The uncertainty represented by these percentiles comes from a combination of statistical uncertainty in the dose-response functions, climate uncertainty across GCMs, and within-month weather realization, as sampled by Monte Carlo runs.</p> <p>The archive contains four folders: county_20a with county-level impacts, state_20yr with state-aggregated impacts, nca_20yr with NCA-region aggregated impacts, and national_20y with nationally aggregated impacts. Aggregation is weighted by population within each region</p> <p>The files are labeled as follow:</p> <p>health-mortage-<BAND>-<RCP>-<YEAR><SUFFIX>.</p> <p>The age BAND is one of 0-0 (newborns), ages 1 - 44, 45 - 64, and 65-inf (older than 64). The RCP may be RCP 2.6, RCP 4.5, RCP 6.0, or RCP 8.5; the years are "2020", for average impacts during 2020 - 2039, "2040" for impacts 2040 - 2059, and "2080" for impacts 2080 - 2099. Files with the suffix 'b.csv' contain percent changes; those with the suffix '-absolute.csv' contain level changes in MT.</p> <p>The columns of these files specify the region (using the FIPS code for counties), and the quantiles from 1% ("q0.01") to 99% ("q0.99").</p> <p><em>This data is provided for non-commercial research and educational purposes.</em></p>
ROS-specific Huntingtin Interactions: Oxidative Stress Optimization 3NP
<p>Optimization step in the lead up to mass spec identification of ROS-specific huntingtin protein-protein interactions.</p>
Site-specific Design Load Cases for floating offshore wind turbine applications I : Historical data
<p>This document includes a brief description of the <a href="https://leopard.tu-braunschweig.de/receive/dbbs_mods_00077703" target="_blank" rel="noopener">first database</a> on the site-specific Design Load Cases (DLCs) based on historical metocean data. The dataset includes metocean data, statistical analysis and site-specific DLCs across the three areas of study defined in the INF4INiTY project: Scottish Sea, Baltic Sea and Adriatic Sea. In addition to the dataset, this deliverable includes a Graphical User Interface (GUI) for the analysis of specific locations within these three areas and the generation of the site-specific DLCs.<br>The aim of this initial version of the database is to provide a first characterisation of the areas of interest in order to use the DLCs on the design of the different innovations planned in various work packages (WPs) INF4INiTY. As the project proceeds, the second database will extend the site-specific DLCs including forecasted data for different horizons and under diverse climate change scenarios.<br>The deliverable is divided into six brief sections describing the (i) the GUI, (ii) characteristics of the data, (iii) the three areas of study and technological requirements, (iv) historical metocean data, (v) site-specific statistical analysis and reporting, and (vi) site-specific DLCs.</p>
Data from: Chemotype-specific susceptibility to foliar spray treatment with 5-azacytidine and kaolin in Tanacetum vulgare
<p><strong>General information</strong></p><p>This deposition contains the datasets that were used in the statistical analysis of the manuscript entitled <strong>Chemotype-specific susceptibility to foliar spray treatment with 5-azacytidine and kaolin in </strong><i><strong>Tanacetum vulgar</strong></i><strong> </strong>submitted to PeerJ.</p><p><strong>Uploaded files</strong></p><ul><li><strong>README</strong> file to explain the datasets</li><li><strong>Glandular trichomes dataset</strong> called Jürgens_et_al_2023_PeerJ_RawData_GlandularTrichomes.txt</li><li><strong>VOC dataset from 5-azacytidine foliar spray treatment</strong> called Jürgens_et_al_2023_PeerJ_RawData_VOC_5AZA.txt</li><li><strong>VOC dataset from kaolin foliar spray treatment</strong> called JJürgens_et_al_2023_PeerJ_RawData_VOC_Kaolin.txt</li></ul>
TO DEVELOP A SYSTEM FOR MANAGING PUBLIC INVOLVEMENT IN THE PRODUCTION OF SPECIFIC LOCAL COSTUMES
<p>This article discusses the challenges of implementing a modern management system for controlling the efficient use of cotton in public carpet production, and also considers the issues related to maximizing the utilization of modern management in the textile industry.</p>
SPECIFIC CHARACTERISTICS OF REPEATED NOMINATIONS IN SYNTAGMATIC RELATIONSHIPS
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SPECIFIC RHIZOBACTERIA PROTECT WHEAT PLANTS FROM PHYTOPATHOGENIC FUNGI.
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SOME CHARACTERISTICS OF WORD SEMANTIC SPECIFICATIONS IN FRENCH AND UZBEKI LANGUAGES
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Community and species-specific responses of coastal birds to COVID-19 "anthropause" in the largest hypersaline lagoon of South America
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SPECIFIC FEATURES OF USING GRAPHIC INFORMATION PROCESSING TECHNOLOGY
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Mycobacterium tuberculosis-specific antibodies detect progression to active tuberculosis in South African adolescents
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LEXICAL SEMANTIC FEATURES OF SPECIFIC GENDER AFFILIATION IN THE LANGUAGE COMMUNITY
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Dataset: The unusual gene architecture of polyubiquitin is created by dual-specific splice sites
<p>Data for the research paper "The unusual gene architecture of polyubiquitin is created by dual-specific splice sites".</p>
Double and triple thermodynamic mutant cycles reveal the basis for specific MsbA-lipid interactions
<p>Raw native MS data for manuscript</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.