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Figure 1 from: Callaghan TM, Podmirseg SM, Hohlweck D, Edwards JE, Puniya AK, Dagar SS, Griffith GW (2015) Buwchfawromyces eastonii gen. nov., sp. nov.: a new anaerobic fungus (Neocallimastigomycota) isolated from buffalo faeces. MycoKeys 9: 11-28. https://doi.org/10.3897/mycokeys.9.9032
Figure 1 - Morphology of Buwchfawromyces eastonii. Sporangia are ovoid (A) to spherical (B), tending to be more elongate when growing on straw particles (C). Zoospores are uniformly monoflagellate (D). A distinct septum is visible where the sporangium is attached to the sporangiophore (A, E, G, H arrowed) and sporangiophores are often swollen (E–H). Nuclei were not observed in sporangiophores or rhizoids (F, H, I). Scalebar indicates 50 µm.
Figure 3 from: Callaghan TM, Podmirseg SM, Hohlweck D, Edwards JE, Puniya AK, Dagar SS, Griffith GW (2015) Buwchfawromyces eastonii gen. nov., sp. nov.: a new anaerobic fungus (Neocallimastigomycota) isolated from buffalo faeces. MycoKeys 9: 11-28. https://doi.org/10.3897/mycokeys.9.9032
Figure 3 - Maximum likelihood tree based on alignment (357 bp) of the ITS1 region. Midpoint rooting was used to root the tree and bootstrap values over 70% are shown (1000 replicates). Scalebar shows the number of substitutions per site. Clades corresponding to the known genera, the new Buwchfawromyces clade and also the 'polycephalus' clade are labelled. Codes in brackets indicate the novel clades identified by Koetschan et al. (2014).
Figure 2 from: Callaghan TM, Podmirseg SM, Hohlweck D, Edwards JE, Puniya AK, Dagar SS, Griffith GW (2015) Buwchfawromyces eastonii gen. nov., sp. nov.: a new anaerobic fungus (Neocallimastigomycota) isolated from buffalo faeces. MycoKeys 9: 11-28. https://doi.org/10.3897/mycokeys.9.9032
Figure 2 - Maximum likelihood tree based on alignment of the D1/D2 region of the Large Ribosomal Subunit (700 bp alignment; 37 sequences; 188 phylogenetically informative sites; TrN+gamma model). Bootstrap values over 70% are shown (1000 replicates). Scale bar indicates number of substitutions per site.
Figure 1 from: Juárez ML, Devescovi F, Břízová R, Bachmann G, Segura DF, Kalinová B, Fernández P, Ruiz MJ, Yang J, Teal PEA, Cáceres C, Vreysen MJB, Hendrichs J, Vera MT (2015) Evaluating mating compatibility within fruit fly cryptic species complexes and the potential role of sex pheromones in pre-mating isolation. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 125-155. https://doi.org/10.3897/zookeys.540.6133
Figure 1 - Walk-in field cage set up to evaluate female response to male pheromone: a artificial lek hanging from the tree b Anastrepha fraterculus female over an artificial lek.
Figure 2 from: Gonçalves FMP, Goyder DJ (2016) A brief botanical survey into Kumbira forest, an isolated patch of Guineo-Congolian biome. PhytoKeys 65: 1-14. https://doi.org/10.3897/phytokeys.65.8679
Figure 2 - Turraea vogelii Hook.f. ex Benth, Cola welwitschii Exell & Mendonça ex R. Germ., Pancovia golungensis (Hiern) Exell & Mendonça, Cochlospermum angolense Welw. ex Oliv., Inga vera Willd. subsp. vera, Pavetta gossweileri Bremek, Pittosporum viridiflorum Sims, Clerodendrum poggei Gürke
Figure 1 from: Gonçalves FMP, Goyder DJ (2016) A brief botanical survey into Kumbira forest, an isolated patch of Guineo-Congolian biome. PhytoKeys 65: 1-14. https://doi.org/10.3897/phytokeys.65.8679
Figure 1 - Map of Angola and its provinces, Cuanza Sul province highlighted and Kumbira in Conda municipality (black dot). Kumbira forest (top), the forest with Njelo mountain in the background (bottom).
Data for "Evolution upon leather manufacturing: comparison of the two Halobacterium salinarum strains isolated in the early 20-th century with the twin laboratory strains NRC-1 and R1"
<p>This set of files contains data associated with the emerging manuscript<br> "Evolution upon leather manufacturing: comparison of the two<br> Halobacterium salinarum strains isolated in the early 20-th century<br> with the twin laboratory strains NRC-1 and R1."<br> by Friedhelm Pfeiffer and Mike Dyall-Smith.</p> <p>The manuscript provides a detailed comparison of the complete genome<br> sequences from four strains of Halobacterium salinarum:<br> 91-R6 (NRC 34002, the type strain of Halobacterium salinarum);<br> 63-R2 (NRC 34001, a strain originally reported as 'cutirubra');<br> NRC-1 and R1 (two laboratory strains).</p> <p>A detailed comparison of the complete genome sequences of three strains<br> (excluding 63-R2) has been previously reported:<br> Microbiologyopen (2020) 9: e974 (doi: 10.1002/mbo3.974; PMID:31797576).</p> <p>The 'seq_' series of files contains newly reported sequences of<br> episomal plasmids (pHcu190, pHcu229) and plasmid integrants into<br> the chromosome (contigDRAFT1, contigDRAFT2) from strain 63-R2.</p> <p>There are two versions for pHcu229, as this plasmid could only<br> be partially assembled (_asAssembled, 170458 bp) but could be<br> completed in silico (_inSilicoCompleted, 229124 bp).</p> <p>The 'tagMGE_' series of files contains the sequences of all<br> replicons (the main chromosome and all plasmids) with markup<br> of all mobile genetic elements (MGEs) for each of the<br> four strains of Halobacterium salinarum.</p> <p>The file dbHsAllStrainsTotal.fasta contains the complete sequences<br> of the chromosomes and plasmids in a single file.</p> <p>The dbHsAllStrainsCore.fasta contains the same set of sequences but<br> with strain-specific copies of mobile genetic elements removed. This<br> version was generated to facilitate inter-strain sequence comparison.<br> </p>
Text-fig. 31. Scanning electron microscope (SEM) images of isolated pollen of Piercipollis sp. (a, b) and Teebacia sp. (c–e); Catefica locality, Portugal. a) Isolated pollen grain (arrow) adhering to the much larger pollen of Araucariacites sp. in fragment of a conifer cone; note the size difference between the angiosperm and conifer pollen that is typical in Early Cretaceous floras; b) Pollen grain in (a) enlarged showing the extended aperture and homobrochate reticulum with smooth muri supported by long, scattered, columellae; c) Isolated pollen grains adhering to the outer surface of a Saportanthus parvus flower; d) Pollen grain in (c) enlarged showing the open reticulum and muri ornamented by fine transverse ribs; e) Detail of pollen grain in (d) showing the muri supported by long, scattered columellae; note the fine transverse ribs on the muri. Specimens, Catefica 49-S170139-01 (a, b), Catefica 361-S174322-01 (c–e). Scale bars = 50 Μm (a), 20 Μm (c), 6 Μm (b, d), 1.5 Μm (e). in The Early Cretaceous Mesofossil Flora Of Catefica, Portugal: Angiosperms
Text-fig. 31. Scanning electron microscope (SEM) images of isolated pollen of Piercipollis sp. (a, b) and Teebacia sp. (c–e); Catefica locality, Portugal. a) Isolated pollen grain (arrow) adhering to the much larger pollen of Araucariacites sp. in fragment of a conifer cone; note the size difference between the angiosperm and conifer pollen that is typical in Early Cretaceous floras; b) Pollen grain in (a) enlarged showing the extended aperture and homobrochate reticulum with smooth muri supported by long, scattered, columellae; c) Isolated pollen grains adhering to the outer surface of a Saportanthus parvus flower; d) Pollen grain in (c) enlarged showing the open reticulum and muri ornamented by fine transverse ribs; e) Detail of pollen grain in (d) showing the muri supported by long, scattered columellae; note the fine transverse ribs on the muri. Specimens, Catefica 49-S170139-01 (a, b), Catefica 361-S174322-01 (c–e). Scale bars = 50 Μm (a), 20 Μm (c), 6 Μm (b, d), 1.5 Μm (e).
Supplementary material 1 from: Kamimura Y, Lee C-Y, Yamasako J, Nishikawa M (2023) Identification and reproductive isolation of Euborellia species (Insecta, Dermaptera, Anisolabididae) from East and Southeast Asia. ZooKeys 1146: 115-134. https://doi.org/10.3897/zookeys.1146.98248
The samples and results of the crossing experiments
Supplementary material 3 from: Kamimura Y, Lee C-Y, Yamasako J, Nishikawa M (2023) Identification and reproductive isolation of Euborellia species (Insecta, Dermaptera, Anisolabididae) from East and Southeast Asia. ZooKeys 1146: 115-134. https://doi.org/10.3897/zookeys.1146.98248
Species and the collection sites of the Dermaptera samples sequenced in this study
Supplementary material 2 from: Kamimura Y, Lee C-Y, Yamasako J, Nishikawa M (2023) Identification and reproductive isolation of Euborellia species (Insecta, Dermaptera, Anisolabididae) from East and Southeast Asia. ZooKeys 1146: 115-134. https://doi.org/10.3897/zookeys.1146.98248
The specimens and results of morphological measurements
Fig. 10 in New species of land snails (Mollusca: Gastropoda) from two isolated karst formations in central western Madagascar: Tsingy Beanka and Antsingimavo, with additional notes on other regional endemics
Fig. 10. Conulinus randalanai sp. n. and C. rufoniger (Reeve, 1849): (A, B) C. randalanai, holotype, height 16.9 mm, AMS C.469591; (C) C. randalanai, paratype, height 17.5 mm, NMSA L8469/T2897; (D–E) C. rufoniger, Diego Suarez [Antsiranana] district, 8 km south of Orangea, height 18.6 mm, NMSA L8443.
FIG. 4 in Morphological description and molecular phylogeny of two diatom clones from the genus Ulnaria (Kützing) Compère isolated from an ultraoligotrophic lake at the Pole of Cold in the Northern Hemisphere, Republic of Sakha (Yakutia), Russia
FIG. 4. — Phylogenetic analysis of rbcL gene fragments, carried out by the maximum likelihood method. In the tree nodes there are bootstrap values obtained for n = 1000 replicas. Evolution distances are determined by the GTR method with Gamma distributed equal to four. ● Marked sequences obtained in this work.
Supplementary material 1 from: Lin L, Bai Y, Pan M, Tian C, Fan X (2023) Morphology and molecular analyses reveal three new species of Botryosphaeriales isolated from diseased plant branches in China. MycoKeys 97: 1-19. https://doi.org/10.3897/mycokeys.97.102653
Strains used in the molecular analyses in this study
Figure 1 in Isolation of Bacillus thuricgiecsis from tce state of Amazonas, in Brazil, and screening against Aedes aegypti %Diptera, Culicidae)
Figure 1. Amplification products of gen (A) cry4Ba and (B) cry4Aa of dipteran-specific genes isolated from Bacillus thuringiensis from the state of Amazonas, Brazil.
Fig. 3 in Newly recorded genera and species, Pantanalinema rosaneae and Alkalinema pantanalense (Leptolyngbyaceae, Cyanobacteria) isolated in Korea
Fig. 3. Microphotographs of Alkalinema pantanalense from the strain FBCC-A1469. (A-C) Colonies (mats) formed in culture, (D-F) Hormogonia, (G-I) Morphologies of apical cells, (J-L) Firm sheathes of trichomes in culture. Scale bars = (A) 100 μm, (B-L) 10 μm.
Fig. 4 in Newly recorded genera and species, Pantanalinema rosaneae and Alkalinema pantanalense (Leptolyngbyaceae, Cyanobacteria) isolated in Korea
Fig. 4. Phylogenetic position of Pantanalinema and Alkalinema within the family Leptolyngbyaceae inferred from 16S rRNA sequences with the maximum-likelihood (ML) algorithm. 16S rRNA sequences of genera (Gloeobacter violaceus, Accession No. NR074282/ Gloeobacter kilaueenis, Accession No. NR121745) were included as the outgroup. Additionally, the probability of Bayesian analysis was incor- porated into the ML tree to support the strength of each branch. The first and second numbers at the nodes display the bootstrap proportions (BP) (>50%) in ML and posterior probabilities (PP;>0.50) in Bayesian analysis, respectively. The branch lengths are proportional to the scale given.
Fig. 4 in Isolation and identification of 18 unrecorded prokaryotic species from the intestinal tracts of aquatic animals in Korea
Fig. 4. The phylogenetic tree based on 16S rRNA gene sequence showing the phylogenetic relatedness between the two isolated strains belonging to the phylum Bacteroidetes and the type species from each genus. The tree was mainly reconstructed using the NJ, ML, and MP algorithms. The filled diamonds indicate the branches present in the phylogenetic trees reconstructed using three different tree reconstruction methods. Numbers on the nodes represent bootstrap values with 1000 replicates (NJ/ML/MP). Escherichia coli ATCC 11775T was used as an outgroup. The bar indicates 0.05 accumulated substitutions per nucleotide.
Fig. 2 in A report of unrecorded bacterial species of Korea isolated in 2016, belonging to the family Deinococcaceae and Planctomycetaceae
Fig. 2. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the genus Deinococcus. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 substitutions per nucleotide position.
Fig. 2 in Genotype diversity, phylogenetic analysis and seasonality of isolates of Acanthamoeba spp. in swimming pools in Kafrelsheikh, Egypt
Fig. 2. The maximum-likelihood constructed phylogenetic tree of Acanthamoeba isolates inferred from the small subunit ribosomal RNA gene sequences from GenBank showing the phylogenetic position of three strains detected in the present study; T4 (blue), T9 (green) and T11 (red). The tree with the highest log likelihood (-1201.92) is shown.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.