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Figure 17 from: Schiller EK, Wiltschke-Schrotta K, Häffner E, Buschbom J, Leliaert F, Zimkus BM, Dickie JB, Gomes SR, Lyal CH.C, Mulcahy D, Paton A, Droege G (2024) Permits, contracts and their terms for biodiversity specimens. Research Ideas and Outcomes 10: e114366. https://doi.org/10.3897/rio.10.e114366
Figure 17 EXAMPLE CODE 12: Applying a permission to the loan transaction
Figure 13 from: Schiller EK, Wiltschke-Schrotta K, Häffner E, Buschbom J, Leliaert F, Zimkus BM, Dickie JB, Gomes SR, Lyal CH.C, Mulcahy D, Paton A, Droege G (2024) Permits, contracts and their terms for biodiversity specimens. Research Ideas and Outcomes 10: e114366. https://doi.org/10.3897/rio.10.e114366
Figure 13 EXAMPLE CODE 8: Delegation of the activity
Figure 21 from: Schiller EK, Wiltschke-Schrotta K, Häffner E, Buschbom J, Leliaert F, Zimkus BM, Dickie JB, Gomes SR, Lyal CH.C, Mulcahy D, Paton A, Droege G (2024) Permits, contracts and their terms for biodiversity specimens. Research Ideas and Outcomes 10: e114366. https://doi.org/10.3897/rio.10.e114366
Figure 21 EXAMPLE CODE 16: Defining a context-dependent decision - adding an age restriction
Figure 15 from: Schiller EK, Wiltschke-Schrotta K, Häffner E, Buschbom J, Leliaert F, Zimkus BM, Dickie JB, Gomes SR, Lyal CH.C, Mulcahy D, Paton A, Droege G (2024) Permits, contracts and their terms for biodiversity specimens. Research Ideas and Outcomes 10: e114366. https://doi.org/10.3897/rio.10.e114366
Figure 15 EXAMPLE CODE 10: Annotation of a corresponding CMS record (or openDS twin)
Figure 12 from: Schiller EK, Wiltschke-Schrotta K, Häffner E, Buschbom J, Leliaert F, Zimkus BM, Dickie JB, Gomes SR, Lyal CH.C, Mulcahy D, Paton A, Droege G (2024) Permits, contracts and their terms for biodiversity specimens. Research Ideas and Outcomes 10: e114366. https://doi.org/10.3897/rio.10.e114366
Figure 12 EXAMPLE CODE 7: Defining the loan activity of the transaction
Figure 11 from: Schiller EK, Wiltschke-Schrotta K, Häffner E, Buschbom J, Leliaert F, Zimkus BM, Dickie JB, Gomes SR, Lyal CH.C, Mulcahy D, Paton A, Droege G (2024) Permits, contracts and their terms for biodiversity specimens. Research Ideas and Outcomes 10: e114366. https://doi.org/10.3897/rio.10.e114366
Figure 11 EXAMPLE CODE 6: Linking the specimen to its holding institution
Figure 20 from: Schiller EK, Wiltschke-Schrotta K, Häffner E, Buschbom J, Leliaert F, Zimkus BM, Dickie JB, Gomes SR, Lyal CH.C, Mulcahy D, Paton A, Droege G (2024) Permits, contracts and their terms for biodiversity specimens. Research Ideas and Outcomes 10: e114366. https://doi.org/10.3897/rio.10.e114366
Figure 20 EXAMPLE CODE 15: Defining a context-dependent decision - based on country
Figure 2 from: Tilley LJ, Woodburn M, Vincent S, Casino A, Addink W, Berger F, Bogaerts A, De Smedt S, French L, Islam S, Mergen P, Nivart A, Papp B, Petersen M, Santos C, Schiller EK, Semal P, Smith VS, Wiltschke K (2024) Systematic Design of a Natural Sciences Collections Digitisation Dashboard. Research Ideas and Outcomes 10: e118244. https://doi.org/10.3897/rio.10.e118244
Figure 2 CDD relational data model.
Figure 1 from: Tilley LJ, Woodburn M, Vincent S, Casino A, Addink W, Berger F, Bogaerts A, De Smedt S, French L, Islam S, Mergen P, Nivart A, Papp B, Petersen M, Santos C, Schiller EK, Semal P, Smith VS, Wiltschke K (2024) Systematic Design of a Natural Sciences Collections Digitisation Dashboard. Research Ideas and Outcomes 10: e118244. https://doi.org/10.3897/rio.10.e118244
Figure 1 A simplified conceptual view of the TDWG Collections Description data model.
Figure 3 from: Tilley LJ, Woodburn M, Vincent S, Casino A, Addink W, Berger F, Bogaerts A, De Smedt S, French L, Islam S, Mergen P, Nivart A, Papp B, Petersen M, Santos C, Schiller EK, Semal P, Smith VS, Wiltschke K (2024) Systematic Design of a Natural Sciences Collections Digitisation Dashboard. Research Ideas and Outcomes 10: e118244. https://doi.org/10.3897/rio.10.e118244
Figure 3 First page of the Pilot CDD showing a collection overview (Licence: CC-BY).
Figure 10 from: Fujie S, Shimizu S, Tone K, Matsuo K, Maeto K (2021) Stars in subtropical Japan: a new gregarious Meteorus species (Hymenoptera, Braconidae, Euphorinae) constructs enigmatic star-shaped pendulous communal cocoons. Journal of Hymenoptera Research 86: 19-45. https://doi.org/10.3897/jhr.86.71225
Figure 10 Phylogenetic relationships among the species of pulchricornis clade and their lifestyle.
Figure 10 from: Peleshok K, Bondar B, Kryskiw L, Kucher T, Poliak O, Logoyda L (2021) Non-extractive spectrophotometric determination of valsartan in pure form and in pharmaceutical products by ion-pair complex formation with bromophenol blue and methyl red. Pharmacia 68(4): 851-858. https://doi.org/10.3897/pharmacia.68.e73559
Figure 10 Calibration curve for the determination of valsartan with BPB.
Figure 10 from: Veenakumari K, Kolla S, Mohanraj P, Khan FR (2021) Revision of Indian species of Phanuromyia Dodd, 1914 (Platygastroidea, Scelionidae) with descriptions of new species. Deutsche Entomologische Zeitschrift 68(2): 309-339. https://doi.org/10.3897/dez.68.70497
Figure 10 Phanuromyia nirvighna sp. nov. (♂). A. Habitus (dorsal view); B. Antennae.
Figure 10 from: Sharkey MJ, Baker A, McCluskey K, Smith A, Naik S, Ratnasingham S, Manjunath R, Perez K, Sones J, D'Souza M, Jacques BS, Hebert P, Hallwachs W, Janzen D (2021) Addendum to a minimalist revision of Costa Rican Braconidae: 28 new species and 23 host records. ZooKeys 1075: 77-136. https://doi.org/10.3897/zookeys.1075.72197
Figure 10 Lytopylus davidschindeli, holotype.
Figure 10 from: Penev L, Koureas D, Groom Q, Lanfear J, Agosti D, Casino A, Miller J, Arvanitidis C, Cochrane G, Hobern D, Banki O, Addink W, Kõljalg U, Copas K, Mergen P, Güntsch A, Benichou L, Benito Gonzalez Lopez J, Ruch P, Martin CS, Barov B, Demirova I, Hristova K (2022) Biodiversity Community Integrated Knowledge Library (BiCIKL). Research Ideas and Outcomes 8: e81136. https://doi.org/10.3897/rio.8.e81136
Figure 10 A diagram showing the management structure of BiCIKL.
Figure 10 from: Leijs R, Dorey J, Hogendoorn K (2020) The genus Amegilla (Hymenoptera, Apidae, Anthophorini) in Australia: a revision of the subgenus Asaropoda. ZooKeys 908: 45-122. https://doi.org/10.3897/zookeys.908.47375
Figure 10 Amegilla (Asaropoda) dawsoni (Rayment, 1951).
Figure 10 from: Matsuo K, Fujii T, Tokuda M, Ganaha-Kikumura T, Yukawa J, Yamagishi K (2018) Descriptions of two new species of Platygaster Latreille that attack gall midges (Diptera, Cecidomyiidae) with notes on their biology (Hymenoptera, Platygastridae). ZooKeys 754: 113-125. https://doi.org/10.3897/zookeys.754.23296
Figure 10 Holotype female of Platygaster urniphila.
Figure 10 from: Arteaga A, Salazar-Valenzuela D, Mebert K, Peñafiel N, Aguiar G, Sánchez-Nivicela JC, Pyron RA, Colston TJ, Cisneros-Heredia DF, Yánez-Muñoz MH, Venegas PJ, Guayasamin JM, Torres-Carvajal O (2018) Systematics of South American snail-eating snakes (Serpentes, Dipsadini), with the description of five new species from Ecuador and Peru. ZooKeys 766: 79-147. https://doi.org/10.3897/zookeys.766.24523
Figure 10 Adult male holotype of Dipsas bobridgelyi. MZUTI 5417. Scale bar: 1 cm.
Figures 9- 10 from: Popovici OA, Veenakumari K, Mitroiu M-D (2019) A new species of Platygaster (Hymenoptera, Platygastroidea) from India with an unusual antenna. Journal of Hymenoptera Research 68: 19-28. https://doi.org/10.3897/jhr.68.28403
Figures 9- 10 - Platygaster harpagoceras , female (SEM): 9 Habitus, dorsal 10 Habitus, lateral.
Figure 10 from: Murphy R, Berry K, Edwards T, Leviton A, Lathrop A, Riedle J (2011) The dazed and confused identity of Agassiz's land tortoise, Gopherus agassizii (Testudines: Testudinidae) with the description of a new species and its consequences for conservation. ZooKeys 113: 39-71. https://doi.org/10.3897/zookeys.113.1353
Figure 10 - Ventral view of the holotype of Gopherus morafkai, CAS 33867.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.