Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
Phased gene expression and chromatin accessibility during progressive EMT and MET linked to dynamic CTCF engagement (RNA-Seq)
GEO Series GSE145850. Homo sapiens. 31 samples. Type: Expression profiling by high throughput sequencing.
Cumulative in-cis mutagenesis in vivo reveals various functions for CTCF sites at the mouse Hoxd cluster
GEO Series GSE181387. Mus musculus. 86 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Dissecting developmental disorders caused by CTCF mutation at R567 [snRNA-seq]
GEO Series GSE214690. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Female-specific CTCF binding on the inactive X chromosome in mouse
GEO Series GSE66262. Mus musculus x Mus spretus; Mus musculus. 19 samples. Type: Genome binding/occupancy profiling by genome tiling array.
CTCF and transcription orchestrate chromatin structure re-configuration after mitosis [Hi-C]
GEO Series GSE168176. Mus musculus. 22 samples. Type: Other.
CTCF promotes RNA pol II pausing and links DNA methylation to alternative splicing
GEO Series GSE31278. Homo sapiens. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Subtelomeric CTCF and Cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline
GEO Series GSE55053. Homo sapiens. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Advanced auxin-inducible degron system deciphers unique functions of CTCF in transcriptional regulation [ChIP-seq]
GEO Series GSE205408. Homo sapiens. 38 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Spermiogenesis alterations in the absence of CTCF revealed by single cell RNA sequencing
GEO Series GSE166774. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Nuclear receptor activation leads to functional changes in CTCF-defined chromatin structure
GEO Series GSE190464. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
CTCF facilitates subset-specific chromatin interactions to limit the formation of memory CD8+ T cells [ATAC-Seq]
GEO Series GSE205076. Mus musculus. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
An alternative CTCF isoform antagonizes canonical CTCF occupancy and changes chromatin architecture to promote apoptosis
GEO Series GSE108869. Homo sapiens. 30 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Nuclear receptor activation leads to functional changes in CTCF-defined chromatin structure [Hi-C]
GEO Series GSE190463. Homo sapiens. 2 samples. Type: Other.
Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia [Array CGH]
GEO Series GSE182312. Homo sapiens. 93 samples. Type: Genome variation profiling by genome tiling array.
Genome wide targeting of the epigenetic regulatory protein CTCF to gene promoters by the transcription factor TFII-I [gene expression]
GEO Series GSE60915. Mus musculus. 6 samples. Type: Expression profiling by array.
ChIP-seq of H3K27ac and CTCF in primary glioblastoma cultures
GEO Series GSE121601. Homo sapiens. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CRISPR and biochemical screens Identify MAZ as a co-factor in CTCF-mediated insulation at Hox Clusters [CRISPR_set8]
GEO Series GSE192435. synthetic construct; Mus musculus. 13 samples. Type: Other.
RNA interactions are essential for proper CTCF function
GEO Series GSE125595. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Disentangling the architectural and non-architectural functions of CTCF and cohesin in global gene regulation [ATAC-Seq]
GEO Series GSE262516. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
RedChIP identifies noncoding RNAs associated with genomic sites occupied by Polycomb and CTCF proteins
GEO Series GSE174474. Homo sapiens. 8 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.