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1,773 results for “Supplementary data,”
Supplementary data from: Current and past climate co-shape community-level plant species richness in the Western Siberian Arctic
<p>The Arctic ecosystems and their species are exposed to amplified climate warming and, in some regions, to rapidly developing economic activities. We used macroecological modeling to estimate the community-level species richness across the Western Siberian tundra, with climate variables and anthropogenic influence identified as main explanatory factors. Our results reveal complex spatial patterns of community-level species richness in the Western Siberian Arctic. We show that climatic factors such as temperature (including paleotemperature) and precipitation are the main drivers of plant species richness in this area, and the role of relief is clearly secondary.</p> <p>Here we present a supplementing dataset to the analysis of our paper "Current and past climate co-shape community-level plant species richness in the Western Siberian Arctic"<strong> </strong>(<a href="https://doi.org/10.1002/ece3.11140">https://doi.org/10.1002/ece3.11140</a>). Our research is based on the Western Siberian part of the Russian Arctic Vegetation Archive (AVA-RUS, <a href="http://avarus.space">http://avarus.space</a>), with 1483 Braun-Blanquet plots observed from 2005-2018.</p> <p>The dataset contains geolocated species richness data along with sampled raster data on environmental and anthropogenic predictors used for modeling. The scripts are used for paleoclimatic data sampling; testing univariate predictive performance and limited collinearity for all predictors; fitting four different modes: random forest, gradient boosting machine, generalized linear model, and generalized additive model; their validation and projection. Detailed information regarding the data structure and the applied methods could be found in the paper.</p>
Supplementary Data for Progressive Strain Localization with Structural Evolution of Faults and Implications for Earthquake Characteristics
<p>Fault slip measurements from geodetic imaging data (pixel offsets and InSAR) for 16 strike-slip earthquakes. </p> <p>Data columns are: Longitude, Latitude, Fault Slip (meters), 1-sigma uncertainty (meters)</p>
Supplementary data
<p><strong>STATA output from the statistical analysis of the research project "Human native skin fibroblast proliferation enhancement in natural salso-bromo-iodic mineral water added <em>in-vitro</em> culture" carried out at the University of Pavia (Italy).</strong></p> <p>The favourable, regenerative effects on wound healing of some mineral waters have long been empirically demonstrated.<br>The aim of this experimental study was to investigate the effects of an Italian salso-bromo-iodic mineral water (Rivanazzano, PV, Italy) on an in-vitro human native fibroblast culture model, in order to point out any potential regenerative action.<br>Human native fibroblasts were cultured in different experimental conditions:<br>− Dulbecco’s Modified Eagle’s Medium powder (DMEM) reconstituted with distilled water (Control).<br>− DMEM reconstituted with filtered mineral water collected at the spring.<br>− DMEM reconstituted with filtered mineral water collected at the balneotherapy facility.<br>− DMEM reconstituted with filtered heated mineral water collected at the balneotherapy facility.<br>− DMEM partially replaced with filtered mineral water collected at the spring at different concentrations (10%, 20%, 30%, 40%, 50%).<br>− DMEM partially replaced with filtered heated mineral water collected at the balneotherapy facility at different concentrations (10%, 20%, 30%, 40%, 50%).<br>− DMEM partially replaced with filtered mineral water collected at the balneotherapy facility at different concentrations (10%, 20%, 30%, 40%, 50%).<br>Cell proliferation and viability were evaluated using spectrophotometric analysis after cell staining with the XTT Microculture Tetrazolium Assay. A statistical analysis was performed for each experimental condition at 24, 48 and 72 hours.<br>The best outcome was demonstrated in the fibroblasts cultured with DMEM partially replaced with filtered mineral water collected at the spring within the range of 20-50%.<br>The results from our research showed a stimulating activity of the Rivanazzano salso-bromo-iodic mineral water on in-vitro human native fibroblast cultures. This activity was the strongest in the water collected at the spring, while it decreased in the water collected at the balneotherapy facilities. These results could be the baseline for clinical applications within the field of wound healing and balneotherapy.</p>
Supplementary data to A description of Pseudechiniscus xiai sp. nov., with a key to genus Pseudechiniscus in China
<p>XLS from Wang, Lizhi, Xue, Jing, Li, Xiaochen (2018): A description of Pseudechiniscus xiai sp. nov., with a key to genus Pseudechiniscus in China. Zootaxa 4388 (2): 255-264, DOI: https://doi.org/10.11646/zootaxa.4388.2.7</p>
Supplementary data for "Vacancy defect configurations in the metal-organic framework UiO-66: Energetics and electronic structure"
<p>Optimised structures for UiO-66 with various defect configurations in VASP POSCAR format. For naming see the associated paper (DOI:10.1039/c7ta11155j).</p>
Supplementary Data: Combined collider constraints on neutralinos and charginos
<p><strong>Supplementary Data</strong><br> <em>Combined collider constraints on neutralinos and charginos.</em></p> <p>The files in this record contain data for the EWMSSM model considered in the <a href="http://gambit.hepforge.org">GAMBIT</a> paper on constraints on electroweakinos.</p>
Supplementary data to: Detection of Neoantigen-specific T Cells Following a Personalized Vaccine in a Patient with Glioblastoma
<p>Supplemental Data for the patient described in the manuscript: "Detection of Neoantigen-specific T Cells Following a Personalized Vaccine in a Patient with Glioblastoma". Summary of somatic variant calls from DNA whole exome, gene FPKM from RNA sequencing, and neoantigen predictions for high-affinity (ic<sub>50</sub> <500 nM) candidates.</p>
Supplementary Data for "Development of a General Calibration Model and Long-Term Performance Evaluation of Low-Cost Sensors for Air Pollutant Gas Monitoring" (abridged version)
<p>This is a supplementary data set associated with the publication "Development of a General Calibration Model and Long-Term Performance Evaluation of Low-Cost Sensors for Air Pollutant Gas Monitoring" from the Center for Atmospheric Particle Studies, submitted to Atmospheric Measurement Techniques. This is an abbreviated version which does not include the calibrated models; these models must be re-generated by running the codes contained with the data set.</p> <p> </p>
Supplementary data for "Stability and flexibility of Heterometallic Formate Perovskites with the Dimethylammonium Cation: Pressure-induced Phase transitions and Density Functional Theory Calculations"
<p>Optimized structures for DMANaCr, DMAKCr and DMAZn.</p> <p>For each structure there is a zip-file containing the force constants used for the phonon calculation, the phonon frequencies at the gamma point, the calculated thermal properties and the phonon partial density of states.</p> <p>For further information see the associated paper.</p>
Supplementary data for "Molecular-scale thermally activated fractures in methane hydrates: A molecular dynamics study"
<p>In this dataset you can find</p> <p>- a data sample that can be used to confirm the plots in the paper. This can be found in the folder "data_sample". Each folder inside "data_sample" is one simulation. It contains the thermodynamic output from the simulation (log.lammps), and the input script (mw_hydrate_pennycrack.in) and input data (s1_unit_cell_mw.data and water_methane_hydrate.sw) that enables rerunning the simulation using LAMMPS.</p> <p>- A custom LAMMPS region, region_ellipsoid. This has to be compiled into LAMMPS in order to create the systems that we simulate.</p> <p>- A python script, plot_data.py, that shows how to extract the relevant data from the lammps log files, which enables the partial reproduction of figure 3 in the paper. See instructions below for requirements to use this script.</p> <p> </p> <p>"region_ellipsoid" and "data_sample" are in zip containers. In order to use them, please unzip them and leave the resulting folders in the same directory as this README file.</p> <p> </p> <p>Installation instructions to make "plot_data.py" work (assuming you already have numpy and matplotlib):</p> <p>> pip3 install git+https://github.com/henriasv/regex-file-collector.git</p> <p>> pip3 install git+https://github.com/henriasv/lammps-logfile.git</p> <p> </p> <p>If this does not work, please contact Henrik Andersen Sveinsson, henriasv@fys.uio.no</p>
Supplementary Data: Evolution of the cholesterol biosynthesis pathway in animals
<p>Cholesterol plays essential roles in animal development and disease progression. Here, we characterize the evolutionary pattern of the canonical cholesterol biosynthesis pathway (CBP) in the animal kingdom using both genome-wide analyses and functional experiments. CBP genes in the basal metazoans were inherited from their last common eukaryotic ancestor and evolutionarily conserved for cholesterol biosynthesis. The genomes of both the basal metazoans and deuterostomes retain almost the full set of CBP genes, while Cnidaria and many protostomes have independently experienced multiple massive losses of CBP genes that might be due to the geologic events during the Ediacaran period, such as the appearance of an exogenous sterol supply and the frequent perturbation of ocean oxygenation. Meanwhile, the indispensable utilization processes of cholesterol potentially strengthened the maintenance of the complete set of CBP genes in vertebrates. These results strengthen both biotic and abiotic roles in the macroevolution of a biosynthesis pathway in animals.</p>
Supplementary data to Schmiester et al. *Efficient parameterization of large-scale dynamic models based on relative measurements*
<p>This archive contains Supplementary data to the manuscript <em>Efficient parameterization of large-scale dynamic models based on relative measurements</em> by Leonard Schmiester, Yannik Schälte, Fabian Fröhlich, Jan Hasenauer and Daniel Weindl.</p>
Supplementary Data for "Combining genomics and epidemiology to track mumps virus transmission in the United States"
<p>Supplementary data and scripts used to produce figures for "Combining genomics and epidemiology to track mumps virus transmission in the United States."</p> <p>Files are divided into "code" and "data" directories and a README is provided for each.</p>
Supplementary data for: Detection of expressed mutations in acute myeloid leukemia cells using single cell RNA-sequencing
<p>Supplemental data for the publication:<br> Detection of expressed mutations in acute myeloid leukemia cells using single cell RNA-sequencing </p> <p>Contents: <br> - expression_matrices.tar - Gene/Barcode expression matrices from `cellranger count`<br> - *.seurat.rds - R object files with Seurat analyses and data structures for each sample<br> - scrna_mutations.tar.gz - copy of a git repository containing additional scripts and data - also hosted at <a href="https://github.com/genome/scrna_mutations">https://github.com/genome/scrna_mutations</a> (snapshot as of May 20, 2019)</p>
Supplementary data S2 to: Global sinusoidal seasonality in precipitation isotopes
<p>Supplementary Materials to:</p> <p>Allen, S. T., Jasechko, S., Berghuijs, W. R., Welker, J. M., Goldsmith, G. R., and Kirchner, J. W.: Global sinusoidal seasonality in precipitation isotopes, Hydrol. Earth Syst. Sci. 2019. https://doi.org/10.5194/hess-2019-61.</p> <p>Please cite the above manuscript when using these resources. These files are all global maps at 5-minute resolution, spanning all longitudes and latitudes from 60 degrees south to 90 degrees north. See the methods section of the manuscript for more details. </p> <p> </p> <p>Precipitation δ<sup>18</sup>O amplitude (‰)</p> <p>Precipitation δ<sup>18</sup>O phase (day of peak value, in days from the summer solstice)</p> <p>Precipitation δ<sup>18</sup>O offset (‰)</p> <p>Precipitation δ<sup>2</sup>H amplitude (‰)</p> <p>Precipitation δ<sup>2</sup>H phase (day of peak value, in days from the summer solstice)</p> <p>Precipitation δ<sup>2</sup>H offset (‰)</p> <p>Precipitation amount amplitude (mm month<sup>-1</sup>)</p> <p>Precipitation amount phase (day of peak value, in days from the summer solstice)</p> <p>Precipitation amount offset (mm month<sup>-1</sup>)</p>
Supplementary Data - Rectification of Bacterial Diffusion in Microfluidic Labyrinths
<p>Maze5um_ecoli: <em>E. coli </em>trajectories (x- and y-positions, time, index) in a microfluidic maze (height 5µm).<br> Maze8um_ecoli: <em>E. coli</em> trajectories (x- and y-positions, time, index) in a microfluidic maze (height 8µm).<br> OutofMaze5um_ecoli:<em> E. coli</em> trajectories (x- and y-positions, time, index) in a microfluidic channel in absence of a maze (height 5µm).</p> <p>For experimental conditions and details of the tracking algorithm see Weber et al. <em>Frontiers in Physics </em>(2019).</p>
Supplementary dataset for SRL Data Mine article
<p>Supplementary dataset for SRL Data Mine article by Milliner & Donnellan (2019). Titled: <em>Using Daily Observations from Planet Labs Satellite Imagery to Separate the Surface Deformation Between the July 4<sup>th </sup>M<sub>w</sub> 6.4 Foreshock and July 5<sup>th </sup>M<sub>w</sub> 7.1 Mainshock During the 2019 Ridgecrest Earthquake Sequence.</em></p>
Supplementary Data for Publication related to NFFA proposal ID-509
<p>This is supplementary data for the publication "Ordered Transfer from 3D-Oriented MOF Superstructures to Polymeric Films: Microfabrication, Enhanced Chemical Stability, and Anisotropic Fluorescent Patterns", DOI: 10.1002/adma.202404384, related to the NFFA proposal ID-509. </p>
Extended data of the article "Lockbox enrichment facilitates manipulative and cognitive activities for mice": Supplementary Figure
<p><span>Figure and results of the distance traveled in the Free Exploratory Paradigm, Open Field Test, and Elevated Plus Maze Test during habituation are shown</span>.</p>
Fig. 2 in Remarks on Eimeria spp. (Apicomplexa: Eimeriidae) from Kobus spp. (Bovidae: Reduncini), with supplementary morphological data of Eimeria congolensis Ricci-Bitti et al., 1973 from a new host subspecies, the common waterbuck Kobus ellipsiprymnus ellipsiprymnus (Ogilbyi, 1833)
Fig. 2. Photomicrographs of sporulated oocysts of Eimeria congolensis from common waterbucks Kobus ellipsiprymnus ellipsiprymnus in a safari park of Portugal. Note the inner layer (il) and rough outer layer (rol) of the oocyst wall, micropyle (m), nucleous (n), polar granule (pg), refractile body (rb), sporocyst residuum (sr), Stieda (sb) and sub-stieda (ssb) bodies. Scale bar: 10 μm.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.