Find research datasets worth reusing

opencc-by-4.0May 2020View details →

Fig. 6 in New protoceratopsid specimens improve the age correlation of the Upper Cretaceous Gobi Desert strata

Fig. 6. Distribution of the apomorphic features within the protoceratopsid material from different Late Cretaceous localities of the Gobi Desert. A. Ratio of maxillary diastema to tooth row length (after Czepiński 2019). B. Long diastema (>35% of tooth row). C. Fused nasal horn. D. No premaxillary dentition. E. Accessory antorbital fenestra. F. Sharp buccal crest of dentary. Note: A, number of specimens for each sample, with sympatric taxa separated by a comma (Bagaceratops rozhdestvenskyi, Breviceratops kozlowskii in Khulsan, and B. rozhdestvenskyi, Protoceratops hellenikorhinus in Bayan Mandahu); B–F, number of specimens showing the apomorphic features (grey-shaded area) and the total number of specimens in which the condition state can be recognized. Detailed information in SOM.

opencc-by-4.0May 2020View details →

Fig. 3 in New protoceratopsid specimens improve the age correlation of the Upper Cretaceous Gobi Desert strata

Fig. 3. Ceratopsian dinosaur Protoceratops andrewsi Granger and Gregory, 1923 (MPC-D 100/551), from the Late Cretaceous, Üüden Sair, Ömnögovi, Mongolia. Skull in left lateral (A1, A2), dorsal (A3, A4), and right lateral (A5, A6) views. Slab with the skeleton in left laterodorsal view (A7). Abbreviations:, left; r, right.

opencc-by-4.0Dec 2023View details →

Supplementary Materials: The molecular landscape of premature aging diseases defined by multilayer network exploration

This dataset contains supplementary materials related to study "The molecular landscape of premature aging diseases defined by multilayer network exploration" (Beust C., Valdeolivas A., Baptista A., Brière G., Lévy N., Ozisik O., Baudot A.) Supplementary Figures:   Supplementary Figure S1: Clustering of the premature aging disease communities obtained with 50 iterations of  itRWR   Supplementary Figure S2: Clustering of the premature aging disease communities obtained with 150 iterations of  itRWR   Supplementary Figure S3: Clustering of the premature aging disease communities obtained with 100 iteration of  itRWR, with a cutoff value at 0.5 on the dendrogram   Supplementary Tables:   Supplementary Table S1: Premature Aging HPO phenotypes   Supplementary Table S2:Tthe 67 PA diseases and their 132 associated genes from ORPHANET   Supplementary Table S3: Number of nodes, edges, and densities of the 4 network layers composing the multilayer  biological network   Supplementary Table S4: Parameters used for MultiXrank   Supplementary Files:   Supplementary File S1: Csv file containing the enrichment analysis results computed using the genes associated with  physiological aging   Supplementary File S2: Excel file containing the gene nodes belonging to each of the 67 communities   Supplementary File S3: Excel file containing the gene nodes belonging to each cluster (i.e., the union of the genes belonging to the set of communities composing the cluster)   Supplementary File S4: Csv file containing the diseases belonging to each cluster   Supplementary File S5: Excel file containing the enrichment of clusters using lists of physiological aging genes   Supplementary File S6: Csv file containing the lists of genes differentially expressed in human blood, skin, brain, muscle and breast during aging, from the study of Irizar et al.   Supplementary File S7: Excel file containing the enrichment analysis results of the 67 communities, using GO Biological Processes and Cellular Components, and Reactome pathways functional annotations   Supplementary File S8: Excel file containing the enrichment analysis results of the 6 clusters, using GO Biological Processes and Cellular Components, and Reactome pathways functional annotations. The last 2 columns contain  the seed nodes of the cluster annotated for the corresponding function and their corresponding diseases. Supplementary File S8bis: Excel file containing the enrichment analysis results of the 8 clusters obtained with an alternative cutoff of 0.5 in the dendrogram, using GO Biological Processes and Cellular Components, and Reactome pathways functional annotations. Supplementary File S9: Excel file containing enrichment analysis results of the 6 clusters, using HPO phenotypes   Supplementary Text:   Supplementary Text S1: Comparison with alternative network exploration strategies, including classical (non- iterative) Random Walk with Restart, Multilayer network partitioning, and computation of network distances with shortest paths.

APPENDIX 2 in Discovery of Oligocene-aged mammals in Glacier National Park (Kishenehn Formation), Montana

APPENDIX 2. — Dental morphology in occlusal view of CM 87801, Paciculus Cope, 1879 from the Kishenehn Formation.

FIG. 2 in Discovery of Oligocene-aged mammals in Glacier National Park (Kishenehn Formation), Montana

FIG. 2. — Morphology of GLAC 26988, Pronodens transmontanus (Douglass, 1903), from the Kishenehn Formation: A, lateral view of right dentary; B, medial view of right dentary; C, lateral view of left dentary; D, medial view of left dentary; E, line drawing of the occlusal view showing tooth morphology of the left dentary. A photo of the occlusal view of the teeth is showed in Appendix 1. Scale bars: A-D, 2 cm; E, 4 mm.

FIG. 6 in Discovery of Oligocene-aged mammals in Glacier National Park (Kishenehn Formation), Montana

FIG. 6. — Morphology of CM 87801, Paciculus Cope, 1879 from the Kishenehn Formation: A, lateral view of right dentary; B, occlusal view of dentition, m1-2. Abbreviations: Aid, anteroconid; ALac, anterior labial cingulum; ALic, anterior lingual cingulum; Atid, anterolophid; Ecid, ectostylid; Entid, entolophid; Eid, entoconid; Hid, hypoconid; Lc, labial cingulum; Mepid, mesolophid; Mesid, mesostylid; Mid, metaconid; Pc, posterior cingulum; Pid, protoconid; PtiI, protolophid I; PtidII, protolophid II. A photo of the occlusal view of the teeth is showed in Appendix 2. Scale bars: A, 2 mm; B, 1 mm.

FIG. 5 in Discovery of Oligocene-aged mammals in Glacier National Park (Kishenehn Formation), Montana

FIG. 5. — Morphology of GLAC 26987, fossil Miohippus Marsh, 1874 from the Kishenehn Formation: A, lateral view of left dentary; B, medial view of left dentary; C, occlusal view of left dentary; D, lateral view of right dentary; E, medial view of right dentary; F, occlusal view of the right dentary. Scale bar: 2 cm.

FIG. 1 in Discovery of Oligocene-aged mammals in Glacier National Park (Kishenehn Formation), Montana

FIG. 1. — Geographic context of the Oligocene-aged fossils from Glacier National Park: A, detailed map of the Kishenehn basin showing the North Fork and Middle Fork areas, faults in the area (continuous black lines), continental divide (red), national park boundaries (dashed blue line), and water courses (gray). Localities of GLAC 26988 (1), GLAC 26987 (2), and CM 87801 (3) are also showed (modified from Dawson & Constenius 2018). Detailed geographic information is available to qualified researchers from repositories; B, map of western Montana showing the location of five coeval Arikareean-aged deposits bearing leptomerycid and/ or equid fossils: the Kishenehn, Renova (Cabbage Patch beds), and Fort Logan formations as well as the Canyon Ferry Reservoir and the Peterson Creek Local Fauna (in Idaho). Select water bodies, cities, and the continental divide are also displayed. Grey areas represent basins with strata coeval with the Kishenehn Formation. Black box shows location of A; C, location of the state of Montana within the United States with black box showing location of B.

APPENDIX 1 in Discovery of Oligocene-aged mammals in Glacier National Park (Kishenehn Formation), Montana

APPENDIX 1. — Dental morphology in occlusal view of GLAC 26988, Pronodens transmontanus (Douglass, 1903), from the Kishenehn Formation.

FIG. 4 in Discovery of Oligocene-aged mammals in Glacier National Park (Kishenehn Formation), Montana

FIG. 4. — Shape analysis of GLAC 26988 and other leptomerycids from the Arikareean and Hemingfordian: A-C, comparison of the shape of the premolars; D-F, comparison of the shape of the molars. GNP denotes the specimen from the Glacier National Park (Kishenehn Formation); data from the left jaw. Note that the data for Pseudoparablastomeryx Frick, 1937 are in fact a species mean. Each point otherwise represents a specimen. Disparity is showed for Pronodens transmontanus (Douglass, 1903) from the Cabbage Patch beds when four or more specimens were measured. See Tables 1-3 for data. Abbreviations: ant, anterior lophid; Ppf, Pseudoparablastomeryx francescita (Frick, 1937); Pps, P. Pseudoparablastomeryx scotti (Frick, 1937); Ps, Pronodens silberlingi Koerner, 1940; Psp, Pronodens sp.; Pt, P. transmontanus (Douglass, 1903).

FIG. 7 in Discovery of Oligocene-aged mammals in Glacier National Park (Kishenehn Formation), Montana

FIG. 7. — Size analysis of CM 87801 and other specimens of Paciculus Cope, 1879: A, comparison of the size of m1; B, comparison of the size of m2. GNP denotes the specimen from Glacier National Park (Kishenehn Formation). Note that the data for P. cedrus Korth, 2014 are in fact a species mean. Sample size is indicated for each comparison. See Table 6 for data. Abbreviations: GNP, Glacier National Park specimen; Pce, P. cedrus; Pco, P. copiosus Korth, 2010; PCP, P. cf. P. montanus; Pd, P. dakotensis Korth, 2010; Pg, P. gloveri MacDonald, 1970; Pi, P. insolitus Cope, 1879; Pm, P. montanus Black, 1961; Pmc, P. mcgregori MacDonald, 1970; Pn, P. nebraskensis Alker, 1969; Pwa, P. walshi Lindsay, Whistler, Kalthoff & von Koenigswald, 2016; Pwo, P. woodi MacDonald, 1963.

FIG. 8 in Discovery of Oligocene-aged mammals in Glacier National Park (Kishenehn Formation), Montana

FIG. 8. — Shape analysis of CM 87801 and other specimens of Paciculus Cope, 1879: A, comparison of the shape of m1; B, comparison of the shape of m2. GNP denotes the specimen from the Glacier National Park (Kishenehn Formation). Note that the data for P. cedrus Korth, 2014 are in fact a species mean. Each point otherwise represents a specimen. Disparity is showed for species when three or more specimens were measured. See Table 6 for data. Abbreviations: GNP, Glacier National Park specimen; Pce, P. cedrus Korth, 2014; Pco, P. copiosus Korth, 2010; PCP, P. cf. P. montanus; Pd, P. dakotensis Korth, 2010; Pg, P. gloveri MacDonald, 1970; Pi, P. insolitus Cope, 1879; Pm, P. montanus Black, 1961; Pmc, P. mcgregori MacDonald, 1970; Pn, P. nebraskensis Alker, 1969; Pwa, P. walshi Lindsay, Whistler, Kalthoff & von Koenigswald, 2016; Pwo, P. woodi MacDonald, 1963.

FIG. 3 in Discovery of Oligocene-aged mammals in Glacier National Park (Kishenehn Formation), Montana

FIG. 3. — Size analysis of GLAC 26988 and other leptomerycids from the Arikareean and Hemingfordian: A, comparison of the depth of the dentary at different tooth positions; B, comparison of the size of the premolars; C, comparison of the size of the molars. GNP denotes the specimen from Glacier National Park (Kishenehn Formation); data from the left jaw. Note that the data for Pseudoparablastomeryx Frick, 1937 are in fact a species mean. Sample size is indicated for each comparison. See Tables 1-3 for data. Abbreviations: ant, anterior lophid; post, posterior lophid; Ppf, Pseudoparablastomeryx francescita (Frick, 1937); Pps, P. Pseudoparablastomeryx scotti (Frick, 1937); Ps, Pronodens silberlingi Koerner, 1940; Psp, Pronodens sp.; Pt, P. transmontanus (Douglass, 1903).

Fig. 9 in Age, Growth and Reproduction of Coryphaena hippurus (Linnaeus, 1758) in Maltese Waters, Central Mediterranean

Fig. 9: Mean monthly GSI values for male and female dolphinfish categorised as spawners. Error bars represent ± 2 SE.

Fig. 8 in Age, Growth and Reproduction of Coryphaena hippurus (Linnaeus, 1758) in Maltese Waters, Central Mediterranean

Fig. 8: Maturity ogive for male and female dolphinfish collected from Maltese longline and FAD fisheries in the period 2004–2010.

Fig. 7 in Age, Growth and Reproduction of Coryphaena hippurus (Linnaeus, 1758) in Maltese Waters, Central Mediterranean

Fig. 7: Sex ratio for different size classes of dolphinfish from the Maltese FAD fishery in the period 2004–2010.

Fig. 10 in Age, Growth and Reproduction of Coryphaena hippurus (Linnaeus, 1758) in Maltese Waters, Central Mediterranean

Fig. 10: Birthdate distribution for male and female juvenile dolphinfish sampled from the Maltese FAD fishery.

Fig. 5 in Age, Growth and Reproduction of Coryphaena hippurus (Linnaeus, 1758) in Maltese Waters, Central Mediterranean

Fig. 5: Dorsal spine found to be most suitable for measurement and subsequent calculation of the MIR. This was the first of the longest spines in the dorsal fin (arrow) of dolphinfish. Spine numbers within the dorsal fin are indicated. (Scale bar: 3 cm).

Fig. 4 in Age, Growth and Reproduction of Coryphaena hippurus (Linnaeus, 1758) in Maltese Waters, Central Mediterranean

Fig. 4: L-W relationships for male and female dolphinfish sampled from the Maltese longline and FAD fisheries in the period 2004-2010.

Fig. 3 in Age, Growth and Reproduction of Coryphaena hippurus (Linnaeus, 1758) in Maltese Waters, Central Mediterranean

Fig. 3: Top: Two-year old dolphinfish and bottom: One-year old dolphinfish dorsal spine sections at X25 magnification. A corresponds to the 1st year annulus while B corresponds to the 2nd year annulus.