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338
datasets available to search
ShareScore release 0.9.0
Dataset results
338 results for “antibiotic resistance”
Do Copper enhance antibiotic resistance (AR) in resistant bacteria and/or induce AR in sensitive bacteria? [DNA-seq]
GEO Series GSE160188. Pseudomonas aeruginosa. 60 samples. Type: Genome variation profiling by high throughput sequencing.
Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Streptococcus pneumoniae 180/2
GEO Series GSE152829. Streptococcus pneumoniae. 18 samples. Type: Expression profiling by high throughput sequencing.
Profiles of antibiotic resistance genes (ARGs) and virulence genes (VGs) and their temporal interactions in OD and MBR
GEO Series GSE124018. Bacteria; activated sludge metagenome; Eukaryota; Viruses; Archaea. 48 samples. Type: Other.
Implications of the use of organic fertilizers for Antibiotic Resistant Gene dissemination in agricultural soils and fresh food products. A plot-scale study
GEO Series GSE179685. soil metagenome; feces metagenome; sludge metagenome; solid waste metagenome. 71 samples. Type: Other.
RNAP stalling-derived genome instability underlies ribosomal antibiotics efficacy and resistance evolution (ChIP-seq data)
GEO Series GSE267245. Escherichia coli. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Antibiotic resistance in Aeromonas hydrophila associated with exposure to low levels of oxytetracycline
GEO Series GSE290492. Aeromonas hydrophila. 18 samples. Type: Expression profiling by high throughput sequencing.
Novel Mechanisms of Antibiotic Resistance in Mismatch Repair-Deficient Pseudomonas aeruginosa hypermutators
GEO Series GSE180086. Pseudomonas aeruginosa. 74 samples. Type: Expression profiling by high throughput sequencing.
Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Streptococcus pneumoniae 4559
GEO Series GSE152827. Streptococcus pneumoniae. 18 samples. Type: Expression profiling by high throughput sequencing.
Molecular Epidemiology of Enterobacterales Resistant to Antibiotics of Last Resort in Pregnant Women in Labour at a Tertiary Hospital
GEO Series GSE208573. Enterobacter cloacae; Klebsiella pneumoniae; Enterobacter roggenkampii. 5 samples. Type: Methylation profiling by high throughput sequencing; Other.
Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Streptococcus pneumoniae 947
GEO Series GSE152965. Streptococcus pneumoniae. 18 samples. Type: Expression profiling by high throughput sequencing.
Data deposition - Expanding the genetic toolbox for Cutaneotrichosporon oleaginosus employing newly identified promoters and two novel antibiotic resistance markers
<p>1. folder: Motif_discovery: Data used for motif discovery and results of the RSAT, MEME, and MAST tools</p> <p>2. folder: Plasmid_maps: Plasmid maps used and constructed in both SnapGene and GeneBank format.</p> <p>3. folder: Sanger_sequencing_genomic_integration: Sanger sequencing of the PCR products of the genomic DNA, each on the integrated gene or promoter to confirm genomic integration.</p>
Do Copper enhance antibiotic resistance (AR) in resistant bacteria and/or induce AR in sensitive bacteria? [RNA-seq]
GEO Series GSE160187. Pseudomonas aeruginosa. 60 samples. Type: Expression profiling by high throughput sequencing.
Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Streptococcus pneumoniae 4496
GEO Series GSE152828. Streptococcus pneumoniae. 18 samples. Type: Expression profiling by high throughput sequencing.
Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Streptococcus pneumoniae 180/15
GEO Series GSE152832. Streptococcus pneumoniae. 18 samples. Type: Expression profiling by high throughput sequencing.
Characterization of Antibiotic Resistance and Metal Homeostasis Genes in Midwest USA Agricultural Sediments
GEO Series GSE125810. uncultured soil bacterium; uncultured soil microorganism. 9 samples. Type: Other.
Do Copper enhance antibiotic resistance (AR) in resistant bacteria and/or induce AR in sensitive bacteria?
GEO Series GSE160190. Pseudomonas aeruginosa. 120 samples. Type: Expression profiling by high throughput sequencing; Genome variation profiling by high throughput sequencing.
REPARES interlaboratory study (ring test) on qPCR quantification of antibiotic resistance genes and other related genes in DNA isolated from sewage sludge and wastewater
<p>This dataset collects data on interlaboratory study (Ring test), performed within project REPARES in two phases (Ring test phase 1, Ring test phase 2). Sampling and analyses for phase 1 started on 25.2.2020 and for phase 2 on 27.9.2021. The sampling site was a wastewater treatment plant (> 100 000 inhabitants) in the Czech Republic.</p> <p>REPARES: Research platform on antibiotic resistance spread through wastewater treatment plants</p> <p>H2020-EU.4.b. ID 857552</p> <p>https://repares.vscht.cz/</p>
Deciphering Complex Antibiotic Resistance Patterns in Helicobacter pylori Through Whole Genome Sequencing and Machine Learning
<p>Helicobacter pylori affects billions of people worldwide. Despite the availability of different antibiotics, emerging resistance of H. pylori renders antibiotic treatment ineffective. Next generation sequencing provides a powerful technology to investigate the genotype-phenotype connection for H. pylori. However, the prediction of antibiotic resistance using whole genome sequencing data remains a formidable challenge. Here we conducted a comprehensive investigation into the antibiotic resistance profiles of H. pylori strains against five distinct antibiotics, alongside assessing clinical treatment outcomes for Amoxicillin and Clarithromycin combination therapy. Concurrently, we performed whole-genome sequencing on a collection of H. pylori isolates. We rigorously evaluated the potential for predicting antibiotic resistance through univariate statistical tests, multivariate unsupervised and supervised machine learning. Our study contributes valuable insights towards enhancing precision and effectiveness in antibiotic treatment strategies for H. pylori infections with the application of whole-genome sequencing for H. pylori.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.