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FIGURE 4 in Comparing genetic markers' efficiencies for discrimination between two commercially important holothuroids in the Mediterranean Sea, Holothuria polii and Holothuria sanctori
FIGURE 4. Distribution of H3-based genetic pairwise distances among different Mediterranean species obtained in the current study and available in the GenBank. (a): H. polii vs. Mediterranean holothuroids, (b) H. sanctori vs. the Mediterranean holothuroids.
FIGURE 7 in Comparing genetic markers' efficiencies for discrimination between two commercially important holothuroids in the Mediterranean Sea, Holothuria polii and Holothuria sanctori
FIGURE 7. BI phylogenetic analysis for H. polii, H. sanctori, and different Mediterranean holothuroids, based on partial sequences of H3 gene. Four Markov Chains Monte Carlo (MCMC) samples were analyzed for 10 million (ngen=10,000,000) generations. Bootstrap values are shown above the branches. Bold labels refer to sequences obtained in the current study for H. polii and H. sanctori.
Replication package for "Blended Modeling in Commercial and Open-source Model-Driven Software Engineering Tools: A Systematic Study"
<p>Replication package for the paper <em>Blended Modeling in Commercial and Open-source Model-Driven Software Engineering Tools: A Systematic Study</em>.</p> <p>Protocol</p> <ul> <li><code>/01-protocol/protocol.pdf</code></li> </ul> <p>Data & analysis scripts</p> <p>This replication package is structured as follows:</p> <ul> <li><code>/02-search</code> - Detailed data on the <code>/academic</code> and <code>/grey literature</code> search.</li> <li><code>/03-tools</code> - Identified tools and inclusion/exclusion decisions.</li> <li><code>/04-classification_schema</code> - Classification framework and the corresponding data extraction form.</li> <li><code>/05-data</code> - Clean data in a processable form.</li> <li><code>/06-analysis</code> - Analysis scripts and results.</li> </ul>
Draft Genome Manuscript for Curtobacterium sp. Isolated from Berries Surfaced in Commercial Cranberry Bogs in Massachusetts, USA
<p>Annotated genome of Curtobacterium sp. MWU13.2055</p>
Draft Genome Manuscript for Pseudomonas sp. Strain MWU13.3659 Isolated from Berries Surfaced in Commercial Cranberry Bogs in Massachusetts, USA
<p>Annotated genome of Pseudomonas sp. MWU13.3659</p>
Validation phase on the cell lines using three different commercial NGS panels
<p>We performed a validation phase on the selected cell lines using three different commercial NGS panels. Similarly, two independent NGS runs using the OTML, TSO500 and QIAseq Targeted DNA Panel were conducted to ensure consistency of the results.</p>
Habitat availability alters the relative risk of a bovine tuberculosis breakdown in the aftermath of a commercial forest clearfell disturbance
<p><span></span></p> <p>1. Human modification of landscapes and associated disturbances may facilitate the emergence and spread of zoonotic diseases. Policy-makers need better understanding of the link between anthropogenic disturbances and wildlife disease hosts at the interface of human society and the natural environment, e.g. agriculture, forestry and aquaculture. Empirical research is strongly needed for the control of novel zoonoses which might emerge, as well as the management of existing zoonoses with significant economic repercussions such as bovine tuberculosis (bTB).</p> <p>2. We aimed to examine the link between ecological disturbance and relative bTB risk using Ireland as a case study. We analysed clearfell forestry operations and assessed bTB breakdowns within cattle farms across different spatio-temporal scales over multiple years, examining how ecological conditions may modulate this relationship using conditional logistic regression models.</p> <p>3. We found a significant effect of the interaction between the extent of clearfell forestry removed and the extent of natural grassland and mixed forestry present on relative bTB risk. This interaction was dynamic, leading to an increase or decrease of the relative bTB risk depending on where (between 2 and 6 km from the farm) and when (between 0 and 36 months prior to the bTB outbreak) the clearfell operations occurred.</p> <p>4. Our study provides empirical evidence of the link between mechanised forestry operations and fluctuating relative bTB risk in cattle farms, although the mechanism behind it is yet to be elucidated. Given our data, we hypothesise that wildlife hosts may abandon the area subjected to clearfell when disturbance is highest (during active operations and shortly afterward) but are subsequently attracted back to the site as they regenerate, potentially affecting the contact rates with livestock and thus, relative bTB risk.</p> <p>5. Our analysis demonstrates that landscape modification is correlated with a change in relative bTB risk that is dynamic in time and space, allowing managers to understand the risk in landscape modification and inform policy accordingly. Landscape-level studies are necessary to unveil subtle ecological processes, shifting research and management efforts away from cattle herd-centric and toward macroecological surveillance of wildlife hosts and longitudinal assessment of bTB risk.</p>
Commercial standards of Streptomyces antibiotics (LC-MS-MS/MS)
<p>Commercial standards for 8 antibiotics produced by Streptomyces used for method validation for the untargeted metabolomics workflow UmetaFlow. Germicidin A, Germicidin B, Kanamycin, Tetracycline, Thiostreptone, Globomycin, Ampicillin, Apramycin. Publicly available also at MassIVE MSV000090047.</p>
Dataset for "Rainfall intensity estimations based on degradation characteristics of images taken with commercial cameras" (3/3)
<p>Dataset for "Rainfall intensity estimations based on degradation characteristics of images taken with commercial cameras" (3/3)</p> <p>This dataset contains images of Camera 3.</p>
Dataset for "Rainfall intensity estimations based on degradation characteristics of images taken with commercial cameras" (2/3)
<p>Dataset for "Rainfall intensity estimations based on degradation characteristics of images taken with commercial cameras" (2/3)</p> <p>This dataset contains images of Camera 2.</p>
Dataset for "Rainfall intensity estimations based on degradation characteristics of images taken with commercial cameras" (1/3)
<p>Dataset for "Rainfall intensity estimations based on degradation characteristics of images taken with commercial cameras" (1/3)</p> <p>This dataset contains images of Camera 1 and data used for analysis.</p>
Portable ultrasound technologies for estimating gestational age in pregnant women: A scoping review and analysis of commercially available models
<p><strong>Objectives</strong>: To identify all available studies assessing the use of portable ultrasound devices for pregnant women, with the specific aim of finding evidence for devices used to determine gestational age and their validity when compared to conventional ultrasound machines. We also wanted to determine what portable ultrasound models are commercially available for obstetric use. </p> <p><strong>Design</strong>: Systematic scoping review</p> <p><strong>Primary and secondary outcome measures:</strong> Extracted variables included study design, population, method of ultrasound measurement, devices used and whether studies formally validated accuracy against conventional ultrasound</p> <p><strong>Results</strong>: We searched four databases – Medline, Embase, CINAHL, and Maternal and Infant Care. In total, 56 studies from 34 countries were identified; most were observational studies. Across all studies, 27 different portable ultrasound models (from 17 manufacturers) were evaluated. Twenty-one studies assessed use of portable ultrasound for evaluating fetal characteristics or estimating gestational age, and 10 of these were formal validation studies. In total, six portable devices have been validated for gestational age estimation against a conventional ultrasound comparator. The web searches identified 102 portable devices (21 manufacturers). These were a mix of handheld devices that connected to a phone or computer, or laptop-style portable ultrasound devices. Prices ranged from $1,190 to $30,000 USD and weight ranged from 0.9 kg to 13.0 kg.</p> <p><strong>Conclusion</strong>: While the number of commercially available portable ultrasound devices continues to grow, there remains a lack of peer-reviewed, quality evidence demonstrating their accuracy and validity when compared to conventional ultrasound machines. This review identified some models that may be useful in gestational age estimation in low-resource settings, but more research is required to help implement the technology at scale.</p>
FIGURE 4 in Photophore counts in the deep-sea commercial shrimp Aristeus alcocki Ramadan, 1938 (Crustacea: Decapoda: Aristeidae), with a revised key to the Indo-West Pacific species of the genus
FIGURE 4. Neighbor-joining (NJ) tree from partial sequences of mitochondrial COI gene of the Indo-West Pacific species of Aristeus. Numbers at nodes are bootstrap values and only values>50 are shown.?: indicates possible misidentification in GenBank and reexamination of voucher specimens is necessary.
FIGURE 3. Aristeus alcocki Ramadan, 1938 in Photophore counts in the deep-sea commercial shrimp Aristeus alcocki Ramadan, 1938 (Crustacea: Decapoda: Aristeidae), with a revised key to the Indo-West Pacific species of the genus
FIGURE 3. Aristeus alcocki Ramadan, 1938, Sakthikulangara fishing harbor, southwestern India, female cl 52.6 mm (DABFUK). A, left pereiopod I, chela to distal part of merus; B, left pereiopod II, chela to distal part of merus; C, left pereiopod III, chela to distal part of merus; D, left pereiopod IV, dactylus to distal part of merus; E, left pereiopod V, dactylus to distal part of merus. Dots representing photophores. Scale = 2 mm.
FIGURE 2. A, C in Photophore counts in the deep-sea commercial shrimp Aristeus alcocki Ramadan, 1938 (Crustacea: Decapoda: Aristeidae), with a revised key to the Indo-West Pacific species of the genus
FIGURE 2. A, C, Aristeus alcocki Ramadan, 1938, Sakthikulangara fishing harbor, southwestern India, A, female cl 41.4 mm (DABFUK), C, female cl 52.6 mm (DABFUK)); B, D, A. virilis (Bate, 1881), Dasi fishing port, northeastern Taiwan, female cl 38.8 mm (NTOU M02048). A, B, branchial chamber of thoracic segment VI and VII (corresponding to pereiopods III and IV), a= arthobranch, e = epipods, p = pleurobranch, P = pereiopod; C, D, pterygostomian region of carapace. Scales: A, B = 2 mm, C, D = 5 mm.
FIGURE 1. Aristeus alcocki Ramadan, 1938 in Photophore counts in the deep-sea commercial shrimp Aristeus alcocki Ramadan, 1938 (Crustacea: Decapoda: Aristeidae), with a revised key to the Indo-West Pacific species of the genus
FIGURE 1. Aristeus alcocki Ramadan, 1938, Sakthikulangara fishing harbor, southwestern India, female cl 41.4 mm (DABFUK), atypical in having only two instead of three dorsal rostral teeth.
Kaisa Helminen is CEO of Fimmic Oy, a Finnish company that created the first commercial tool integrating deep learning and computer vision for pathology research. Photograph: Sebastian Mardones / Health Capital Helsinki. in Deep learning brings speed, accuracy to the life sciences.
Kaisa Helminen is CEO of Fimmic Oy, a Finnish company that created the first commercial tool integrating deep learning and computer vision for pathology research. Photograph: Sebastian Mardones / Health Capital Helsinki.
Effect of Project Management on Success of Mergers and Acquisitions of Companies in Rwanda: case of Investment Finance / Commercial Buildings Project of KCB and Rural Sector Support Project of BPR (2020-2023).
<h1><span><br></span></h1> <p><span>Background: the study aimed to assess the impact of project management on the success of mergers and acquisitions in Rwandan companies, focusing on the Investment Finance/Commercial Buildings project of KCB and the Rural Sector Support Project of BPR. The specific objectives included examining the effects of project timeline management, project budget management, project human resource management, project quality planning management, and project risk assessment on the success of mergers and acquisitions. <span> </span>Methods: The research utilized descriptive and correlative research designs, employing a mixed approach of qualitative and quantitative methods. Data were collected from a population of 237 individuals, with a sample size of 149 selected through stratified and purposive sampling. Statistical Package for the Social Sciences (SPSS) version 23.0 was used for data processing and analysis, employing descriptive statistics, correlation, and multiple linear regression analysis. Findings: The correlation analysis revealed significant and positive relationships between the independent variables (X1, X2, X3, X4, and X5) and the dependent variable </span><span>(Y - success of mergers and acquisitions). Effective timeline management (X1) demonstrated a significant positive correlation (Pearson Correlation = 0.476), emphasizing its importance for project success. Project budget management (X2) also exhibited a significant positive correlation (Pearson Correlation = 0.583), highlighting the value of budget management. Efficient human resource management (X3) showed a significant positive correlation (Pearson Correlation = 0.522), underscoring the role of human resources in project success. Effective quality planning management (X4) displayed a significant positive correlation (Pearson Correlation = 0.621), emphasizing the importance of quality planning. Thorough project risk assessment (X5) had a significant positive correlation (Pearson Correlation = 0.671), stressing the role of risk assessment in achieving success. Conclusion: all independent variables (X1, X2, X3, X4, and X5) were found to be positively and significantly correlated with the success of merger and acquisition projects. These results underscore the crucial role of project management factors, including timeline management, budget management, human resource management, quality planning management, and risk assessment, in determining the success of mergers and acquisitions in Rwandan companies. Recommendations: Based on the findings, it is recommended that companies engaged in mergers and acquisitions in Rwanda prioritize effective project management strategies, focusing on timeline management, budget management, human resource management, quality planning management, and risk assessment. Implementing robust project management practices can enhance the likelihood of successful outcomes in the context of mergers and acquisitions. Additionally, organizations are encouraged to invest in training and development programs to build the necessary skills and competencies in project management for their personnel involved in such strategic initiatives.</span></p>
Raw data: Electronic and Structural Property Comparison of a Novel vs. a Commercial Iridium-based OER Catalysts Enabled by Operando Ir L3-edge X-ray Absorption Spectroscopy
<p>Raw data for the manuscript titled:</p> <p><strong>Electronic and Structural Property Comparison of a Novel vs. a Commercial Iridium-based OER Catalysts Enabled by <em>Operando </em>Ir L3-edge X-ray Absorption Spectroscopy</strong></p> <p> </p>
FIGURE 1 in A simple molecular method for rapid identification of commercially used Amblyseius and Neoseiulus species (Acari: Phytoseiidae)
FIGURE 1. Products of endonuclease digestion of the PCR products (ITS1/ITS4 primers): 1, AccB1I; 2, AspLEI; 3, SspI.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.