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476
datasets available to search
ShareScore release 0.9.0
Dataset results
476 results for “footprints”
Footprint-free human fetal foreskin derived iPSCs: a tool for modeling hepatogenesis associated gene regulatory networks
GEO Series GSE66282. Homo sapiens. 12 samples. Type: Expression profiling by array.
Genome-wide assessments of transcriptional pauses and errors by nascent transcript sequencing combined with RNase footprinting (RNET-seq)
GEO Series GSE62102. Escherichia coli. 2 samples. Type: Expression profiling by high throughput sequencing.
High-resolution CTCF footprinting reveals impact of chromatin state on cohesin extrusion [HiChIP]
GEO Series GSE285007. Homo sapiens. 4 samples. Type: Other.
Seminoma and embryonal carcinoma footprints identified by analysis of integrated genome-wide epigenetic and expression profiles of germ cell cancer cell lines
GEO Series GSE56454. Homo sapiens. 10 samples. Type: Expression profiling by array; Methylation profiling by genome tiling array; Genome binding/occupancy profiling by high throughput sequencing.
Sequencing of RNA and footprints of wildtype and RpS5b mutant Drosophila ovaries [RIBO-seq]
GEO Series GSE168878. Drosophila melanogaster. 4 samples. Type: Other.
Polysome profiling and ribosome footprinting of Drosophila mature oocyte and activated egg
GEO Series GSE52799. Drosophila melanogaster. 54 samples. Type: Expression profiling by high throughput sequencing.
Massively multiplex single-molecule oligonucleosome footprinting
GEO Series GSE162410. Homo sapiens; unidentified plasmid. 22 samples. Type: Other.
Tissue-specific transcription footprinting using RNA PolII DamID (RAPID) in C. elegans [Young adult]
GEO Series GSE157416. Caenorhabditis elegans. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
LMX1B missense-perturbation of regulatory element footprints disrupt postnatal serotonergic forebrain axon arborization [ChIP-seq]
GEO Series GSE283963. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Perturbation-response genes reveal signaling footprints in cancer gene expression
GEO Series GSE97979. Homo sapiens. 24 samples. Type: Expression profiling by high throughput sequencing.
Multi-scale chromatin footprinting reveals wide-spread alterations to the structure of DNA regulatory elements [Human BMMC RNA]
GEO Series GSE216461. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
Widespread EJC footprints in the RNA degradome mark mRNA degradation before steady-state translation
GEO Series GSE118215. Arabidopsis thaliana. 14 samples. Type: Other.
Dissecting neural differentiation regulatory networks through epigenetic footprinting
GEO Series GSE62193. Homo sapiens. 99 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Other.
Multi-scale chromatin footprinting reveals wide-spread alterations to the structure of DNA regulatory elements [in vitro footprinting]
GEO Series GSE280479. Homo sapiens. 4 samples. Type: Other.
Post-transcriptional regulation by the let-7 microRNA and the TRIM-NHL protein LIN41 [Ribosome footprinting]
GEO Series GSE80133. Caenorhabditis elegans. 43 samples. Type: Expression profiling by high throughput sequencing.
Ribosome profiling study of Dhh1p overexpression and the dhh1 knockout strain using monosome-protected footprints
GEO Series GSE81269. Saccharomyces cerevisiae. 18 samples. Type: Expression profiling by high throughput sequencing; Other.
High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells (Dnase-seq)
GEO Series GSE25344. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide discovery of daily transcriptome, cis-regulatory elements and transcription factor footprints in the monarch butterfly brain [RNA-Seq]
GEO Series GSE122442. Danaus plexippus. 32 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide discovery of daily transcriptome, cis-regulatory elements and transcription factor footprints in the monarch butterfly brain
GEO Series GSE122447. Danaus plexippus. 39 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide discovery of active regulatory elements and transcription factor footprints in Caenorhabditis elegans using DNase-seq
GEO Series GSE97425. Caenorhabditis elegans. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.