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409
datasets available to search
ShareScore release 0.9.0
Dataset results
409 results for “genome organization”
SMCHD1 controls the structure and accessibility of heterochromatin and functions as an organizer of genome compartments (DamID-Seq)
GEO Series GSE251748. Homo sapiens. 10 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing.
De Novo Assembly of Plasmodium knowlesi Genomes From Clinical Samples Explains the Counterintuitive Intrachromosomal Organization of Variant SICAvar and kir Multiple Gene Family Members
<p>Published DOI: <a href="https://doi.org/10.3389/fgene.2022.855052">https://doi.org/10.3389/fgene.2022.855052</a></p> <p>Supporting data for the attached publication. De Novo assembled genomes of <em>Plasmodium knowlesi</em> generated using Nanopore long reads. Supporting statistical results are included. Variant call files from structural variant calls are attached for each genome. Additionally, statistical results from BUSCO, QUAST, Pomoxis and AGAT are included. Annotation files in GFF3 format including further analyses of these annotation files are attached. Scripts for post analysis are attached with scripts for data generation presented on Github repository: "Pknowlesi_denovo_genome_assembly"</p>
Diurnal 3D genome organization remodeling orchestrates rhythmic gene expression in rice [ChIA-PET]
GEO Series GSE143721. Oryza sativa. 20 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The three-dimensional genomic organization changes in terminal erythropoiesis reveal independence of chromatin condensation from nuclear condensation [ATAC-Seq]
GEO Series GSE185468. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells [MEC_ATAC]
GEO Series GSE228917. Mus musculus. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Transcriptional and genome organization changes in HT1080 cells after overexpression of tissue-specific nuclear transmembrane proteins (NETs)
GEO Series GSE87228. Homo sapiens. 35 samples. Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing.
The role of the 3D genome organization on platinum drug induced DNA damage susceptibility
GEO Series GSE267578. Homo sapiens. 15 samples. Type: Other.
Deciphering the role of 3D genome organization in breast cancer susceptibility
GEO Series GSE184285. Rattus norvegicus. 19 samples. Type: Expression profiling by high throughput sequencing; Other.
Genome structure and organization in mouse CD8 T cells [RNA-seq]
GEO Series GSE85513. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
ChIP-seq of holocentric Chionographis japonica to determine the centromere distribution and genome organization
GEO Series GSE228407. Chionographis japonica; Secale cereale. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Neuronal Activity Suppresses NEUROD-Dependent Transcription and Genome Organization
GEO Series GSE310933. Mus musculus. 87 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing.
Neuronal Activity Suppresses NEUROD-Dependent Transcription and Genome Organization [Hi-C]
GEO Series GSE310752. Mus musculus. 6 samples. Type: Other.
Nuclear speckles as a key regulator for the 3D genome organization [HiC]
GEO Series GSE131463. Mus musculus. 4 samples. Type: Other.
Systematic analysis of circadian gene expression mediated by epigenetic modification and 3D genome organization in Rice [ChIP-Seq]
GEO Series GSE213226. Oryza sativa Indica Group. 37 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
NFIB Is a Pioneer Factor for DNA Replication by Acting as a Genome Organizer [ATAC-seq]
GEO Series GSE201861. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells (HiC)
GEO Series GSE185882. Mus musculus. 8 samples. Type: Other.
Correlated alterations in genome organization, histone methylation, and DNA-lamina interactions in Hutchinson-Gilford progeria syndrome (expression)
GEO Series GSE41751. Homo sapiens. 6 samples. Type: Expression profiling by array.
A role for Snf2 related nucleosome spacing enzymes in genome-wide nucleosome organization
GEO Series GSE31015. Saccharomyces cerevisiae. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A cohesin cancer mutation reveals a role for the hinge domain in genome organization and gene expression [ChIP-seq]
GEO Series GSE153573. Mus musculus. 25 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The chromatin organization of a chlorarachniophyte nucleomorph genome
GEO Series GSE181751. Bigelowiella natans. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.