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855 results for “model system”

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zenodo32/100

Supplementary material 1 from: Bustamante RO, Alves L, Goncalves E, Duarte M, Herrera I (2020) A classification system for predicting invasiveness using climatic niche traits and global distribution models: application to alien plant species in Chile. NeoBiota 63: 127-146. https://doi.org/10.3897/neobiota.63.50049

Table S1. Exotic species located in Quadrant 1 (see Figure 3) and impacts on biodiversity, agriculture and cattle raisng

opencc-zeroDec 2020View details →
dryad32/100

Data from: Cell death and survival due to cytotoxic exposure modeled as a two-state Ising system

<p>Cancer chemotherapy agents are assessed for their therapeutic utility primarily by their ability to cause apoptosis of cancer cells and their potency is given by an IC50 value. Chemotherapy uses both target-specific and systemic-action drugs and drug combinations to treat cancer. It is important to judiciously choose a drug type, its dosage, and schedule for optimized drug selection and administration. Consequently, the precise mathematical formulation of cancer cells response to chemotherapy may assist in the selection process. In this paper, we propose a mathematical description of the cancer cell response to chemotherapeutic agent exposure based on a time-tested physical model of two-state multiple-component systems near criticality. We describe the Ising model methodology and apply it to a diverse panel of cytotoxic drugs administered against numerous cancer cell lines in a dose-response manner. The analyzed dataset was generated by the Netherlands Translational Research Center B.V.(Oncolines). This approach allows for an accurate and consistent analysis of cytotoxic agents' effects on cancer cell lines and reveals the presence or absence of the bystander effect through the interaction constant. By calculating the susceptibility function, we see the value of IC50 coinciding with the peak of this measure of the system's sensitivity to external perturbations.</p>

opencc-zeroJan 2020View details →
dryad32/100

Data from: Population genetics of Setaria viridis, a new model system

An extensive survey of the standing genetic variation in natural populations is among the priority steps in developing a species into a model system. In recent years, green foxtail (Setaria viridis), along with its domesticated form foxtail millet (S. italica), has rapidly become a promising new model system for C4 grasses and bioenergy crops, due to its rapid life cycle, large amount of seed production, and small diploid genome, among other characters. However, remarkably little is known about the genetic diversity in natural populations of this species. In this study, we survey the genetic diversity of a world-wide sample of more than 200 S. viridis accessions, using the genotyping by sequencing technique. Two distinct genetic groups in S. viridis and a third group resembling S. italica were identified, with considerable admixture among the three groups. We find the genetic variation of North American S. viridis correlates with both geography and climate, and is representative of the total genetic diversity in this species. This pattern may reflect several introduction/dispersal events of S. viridis into North America. We also modeled demographic history and show signal of recent population decline in one subgroup. Finally we show linkage disequilibrium decay is rapid (less then 45 kb) in our total sample and slow in genetic subgroups. These results together provide an in-depth understanding of the pattern of genetic diversity of this new model species on a broad geographic scale. They also provide key guidelines for on-going and future work including germplasm preservation, local adaptation, crossing designs and genome-wide association studies.

opencc-zeroDec 2013View details →
dryad32/100

Data from: Gene trees, species trees and Earth history combine to shed light on the evolution of migration in a model avian system

The evolution of migration in birds has fascinated biologists for centuries. In this study, we performed phylogenetic-based analyses of Catharus thrushes, a model genus in the study of avian migration, and their close relatives. For these analyses, we used both mitochondrial and nuclear genes, and the resulting phylogenies were used to trace migratory traits and biogeographic patterns. Our results provide the first robust assessment of relationships within Catharus and relatives and indicate that both mitochondrial and autosomal genes contribute to overall support of the phylogeny. Measures of phylogenetic informativeness indicated that mitochondrial genes provided more signal within Catharus than did nuclear genes, whereas nuclear loci provided more signal for relationships between Catharus and close relatives than did mitochondrial genes. Insertion and deletion events also contributed important support across the phylogeny. Across all taxa included in the study, and for Catharus, possession of long-distance migration is reconstructed as the ancestral condition, and a North American (north of Mexico) ancestral area is inferred. Within Catharus, sedentary behaviour evolved after the first speciation event in the genus and is geographically and temporally correlated with Central American distributions and the final closure of the Central American Seaway. Migratory behaviour subsequently evolved twice in Catharus and is geographically and temporally correlated with a recolonization of North America in the late Pleistocene. By temporally linking speciation events with changes in migratory condition and events in Earth history, we are able to show support for several competing hypotheses relating to the geographic origin of migration.

opencc-zeroDec 2012View details →
dryad32/100

Data from: Population dynamics of an Arctiid caterpillar-tachinid parasitoid system using state-space models

1. Population dynamics of insect host–parasitoid systems are important in many natural and managed ecosystems and have inspired much ecological theory. However, ecologists have a limited knowledge about the relative strengths of species interactions, abiotic effects and density dependence in natural host–parasitoid dynamics. Statistical time-series analyses would be more informative by incorporating multiple factors, measurement error and noisy dynamics. 2. We use a novel maximum likelihood and model-selection analysis of a state-space model for host–parasitoid dynamics to examine 21 years of annual census data for woolly bear caterpillars (Platyprepia virginalis) and their locally host-specific tachinid parasitoids (Thelaira americana). 3. Caterpillar densities varied by three orders of magnitude and were driven by density dependence and precipitation from the previous March but not detectably by parasitoids, despite variable and sometimes high (&gt;50%) parasitism. 4. Fly fluctuations, as estimated from per cent parasitism, were affected by density dependence and precipitation from the previous July. There was marginal evidence that host abundance drives fly fluctuations as a generic linear effect but no evidence for classical Nicholson–Bailey coupling. 5. The state-space model analysis includes new methods for likelihood calculation and allows a balanced consideration of effect magnitude and statistical significance in a nonlinear model with multiple alternative explanatory variables.

opencc-zeroDec 2012View details →
dryad32/100

Data from: Population genetic data of a model symbiotic cnidarian system reveal remarkable symbiotic specificity and vectored introductions across ocean basins

The Aiptasia-Symbiodinium symbiosis is a promising model for experimental studies of cnidarian-dinoflagellate associations, yet relatively little is known regarding the genetic diversity of either symbiotic partner. To address this we collected Aiptasia from 17 localities throughout the world and examined the genetic diversity of both anemones and their endosymbionts. Based on newly-developed SCAR markers, Aiptasia consisted of two genetically-distinct populations, one Aiptasia lineage from Florida and a second network of Aiptasia genotypes found at other localities. These populations did not conform to the distributions of described Aiptasia species, suggesting that taxonomic re-evaluation is needed in light of molecular genetics. Associations with Symbiodinium further demonstrated the distinctions among Aiptasia populations. According to 18S-RFLP, ITS2-DGGE, and microsatellite flanker region sequencing, Florida anemones engaged in diverse symbioses predominantly with members of Symbiodinium Clades A and B, but also C, whereas anemones from elsewhere harboured only S. minutum within Clade B. Symbiodinium minutum apparently does not form a stable symbiosis with other hosts, which implies a highly-specific symbiosis. Fine-scale differences among S. minutum populations were quantified using six microsatellite loci. Populations of S. minutum had low genotypic diversity and high clonality (R=0.14). Furthermore, minimal population structure was observed among regions and ocean basins, due to allele and genotype sharing. The lack of genetic structure and low genotypic diversity suggest recent vectoring of Aiptasia and S. minutum across localities. This first ever molecular-genetic study of a globally-distributed cnidarian and its Symbiodinium assemblages reveals host-symbiont specificity and widely-distributed populations in an important model system.

opencc-zeroDec 2012View details →
zenodo32/100

Dataset for the publication "Neutrophilic Bioleaching of Synthetic Covellite – A Model System Combining Experimental Data and Geochemical Modeling"

<p>This dataset contains data, which were used in preparation of the publication &quot;Neutrophilic Bioleaching of Synthetic Covellite &ndash; A Model System Combining Experimental Data and Geochemical Modeling&quot;</p>

opencc-by-4.0Aug 2016View details →
zenodo32/100

Deep Learning Methods for Unsupervised Acoustic Modeling using HMM posteriograms (system #2)

<p>System combination of HMM-DNN with auto encoder features</p>

opencc-by-4.0Jul 2017View details →
zenodo32/100

Deep Learning Methods for Unsupervised Acoustic Modeling using GMM posteriograms (system #1)

<p>System combination of autoencoder and GMM-DNN features.  </p>

opencc-by-4.0Jul 2017View details →
zenodo32/100

Unsupervised Acoustic Modeling using Autoencoder-DNN with HMM Posteriograms (system #3)

<p>DNN trained with Autoencoder features with HMM posteriograms.</p>

opencc-by-4.0Jul 2017View details →
zenodo32/100

Data bundle for egon-data: A transparent and reproducible data processing pipeline for energy system modeling

<p><strong>egon-data</strong> provides a transparent and reproducible open data based data processing pipeline for generating data models suitable for energy system modeling. The data is customized for the requirements of the research project <strong>eGon</strong>. The research project aims to develop tools for an open and cross-sectoral planning of transmission and distribution grids. For further information please visit the eGon <a href="https://ego-n.org/">project website</a> or its <a href="https://github.com/openego/eGon-data">Github repository.</a></p> <p>egon-data retrieves and processes data from several different external input sources. As not all data dependencies can be downloaded automatically from external sources we provide a data bundle to be downloaded by egon-data.</p> <p>The following data sets are part of the available data bundle:</p> <ol> <li> <p><strong>climate_zones_germany</strong></p> <ul> <li> <p>Climate zones in Germany</p> </li> <li> <p>source: Own representation based on DWD TRY climate zones</p> </li> <li> <p>License: Attribution 4.0 International (CC BY 4.0)</p> </li> </ul> </li> <li> <p><strong>cutouts</strong></p> <ul> <li> <p>Weather data from Europe in 2011. Source: ERA5</p> </li> </ul> </li> <li> <p><strong>demand_regio_backup</strong></p> <ul> <li> <p>Electricity and heat demands</p> </li> </ul> </li> <li> <p><strong>emobility</strong></p> <ul> <li> <p>Data on eMobility mit_trip_data:<br>motorized individual travel - individual trips of electric vehicles (EV) generated with a modified version of simBEV v0.1.3 (https://github.com/rl-institut/simbev/tree/1f87c716d14ccc4a658b8d2b01fd12b88a4334d5). simBEV generates driving profiles for BEVs and PHEVs based upon MID data (BMVI) per RegioStaR7 region type (BBSR).</p> </li> <li> <p>Reiner Lemoine Institut, June 2022</p> </li> <li> <p>License: Attribution 4.0 International (CC BY 4.0)</p> </li> </ul> </li> <li> <p><strong>entsoe</strong></p> <ul> <li> <p>&nbsp;</p> </li> </ul> </li> <li> <p><strong>gas_data</strong></p> <ul> <li> <p>CH4 infrastructure</p> </li> <li> <p>Biogas demand</p> </li> <li> <p>CH4 demand</p> </li> <li> <p>Source: SciGRID_gas</p> </li> </ul> </li> <li> <p><strong>geothermal_potential</strong></p> <ul> <li> <p>Spatial distribution of deep geothermal potentials in Germany</p> </li> <li> <p>source: <a href="https://doi.org/10.3390/en11020332">Assessment and Public Reporting of Geothermal Resources in Germany: Review and Outlook</a></p> </li> <li> <p>License: Attribution 4.0 International (CC BY 4.0)</p> </li> </ul> </li> <li> <p><strong>household_electricity_demand_profiles</strong></p> <ul> <li> <p>Annual profiles in hourly resolution of electricity demand of private households for different household types (singles, couples, other) with varying number of elderly and children.<br>The profiles were created using a bottom-up load profile generator by Fraunhofer IEE developed in the Bachelor's thesis "Auswirkungen verschiedener Haushaltslastprofile auf PV-Batterie-Systeme" by Jonas Haack, Fachhochschule Flensburg, December 2012.<br>The columns are named as follows: "&lt;HH_TYPE_PREFIX&gt;a&lt;PROFILE_ID&gt;", e.g. P2a0000 is the first profile of a couple's household with 2 children. See publication below for the list of prefixes. Values are given in Wh.<br>A related conference paper can be obtained here: http://publica.fraunhofer.de/documents/N-374761.html</p> </li> <li> <p>License: Attribution 4.0 International (CC BY 4.0)</p> </li> </ul> </li> <li> <p><strong>household_heat_demand_profiles</strong></p> <ul> <li> <p>Sample heat time series including hot water and space heating for single- and multi-familiy houses. The profiles were created using the loadprofile generator by Fraunhofer IEE developed in the Master's thesis "Synthesis of a heat and electrical load profile for single and multi-family houses used for subsequent performance tests of a multi-component energy system", Simon Ruben Drauz, RWTH Aachen University, March 2016</p> </li> <li> <p>License: Attribution 4.0 International (CC BY 4.0)</p> </li> </ul> </li> <li> <p><strong>hydrogen_network</strong></p> <ul> <li> <p>Planned H2 infrastructure</p> </li> <li> <p>Forecast H2 demand</p> </li> <li> <p>Source: fnb-gas</p> </li> </ul> </li> <li> <p><strong>hydrogen_storage_potential_saltstructures</strong></p> <ul> <li> <p>The data are taken from figure 7.1 in Donadei, S., et al., (2020), p. 7-5..</p> </li> <li> <p>Source: Flach lagernde Salze, (c) BGR Hannover, 2021.<br>Datenquelle: InSpEE-Salzstrukturen, (c) BGR, Hannover, 2015. &amp;<br>Donadei, S., Horv&aacute;th, B., Horv&aacute;th, P.-L., Keppliner, J., Schneider, G.-S., &amp;<br>Zander-Schiebenh&ouml;fer, D. (2020). Teilprojekt Bewertungskriterien und<br>Potenzialabsch&auml;tzung. BGR. Informationssystem Salz: Planungsgrundlagen,<br>Auswahlkriterien und Potenzialabsch&auml;tzung f&uuml;r die Errichtung von Salzkavernen<br>zur Speicherung von Erneuerbaren Energien (Wasserstoff und Druckluft) &ndash;<br>Doppelsalinare und flach lagernde Salzschichten: InSpEE-DS. Sachbericht.<br>Hannover: BGR.</p> </li> <li> <p>License: The original data are licensed under the GeoNutzV, see <a href="https://sg.geodatenzentrum.de/web_public/gdz/lizenz/geonutzv.pdf">https://sg.geodatenzentrum.de/web_public/gdz/lizenz/geonutzv.pdf</a></p> </li> </ul> </li> <li> <p><strong>industrial_gas_demand</strong></p> </li> <li> <p><strong>industrial_sites</strong></p> <ul> <li> <p>Information about industrial sites with DSM-potential in Germany from a Master's thesis by Danielle Schmidt. The data set includes own information on the coordinates of every industrial site.</p> </li> <li> <p>source: Schmidt, Danielle. (2019). Supplementary material to the masters thesis: NUTS-3 Regionalization of Industrial Load Shifting Potential in Germany using a Time-Resolved Model [Data set]. Zenodo. https://doi.org/10.5281/zenodo.3613767</p> </li> <li> <p>License: Attribution 4.0 International (CC BY 4.0)</p> </li> </ul> </li> <li> <p><strong>mastr_geocoding</strong></p> </li> <li> <p><strong>nep2035_version2021</strong></p> <ul> <li> <p>Data extracted from the German grid development plan - power</p> </li> <li> <p>source: Netzentwicklungsplan Strom 2035 (2021), erster Entwurf | &Uuml;bertragungsnetzbetreiber (M) CC-BY-4.0</p> </li> <li> <p>License: Attribution 4.0 International (CC BY 4.0)</p> </li> </ul> </li> <li> <p><strong>pipeline_classification_gas</strong></p> <ul> <li> <p>Parameters for the classification of gas pipelines</p> </li> <li> <p>source: Single parameters extracted from <a href="https://www.econstor.eu/bitstream/10419/173388/1/1011162628.pdf">Electricity, Heat and Gas Sector Data for Modelling the German System</a></p> </li> <li> <p>License: Attribution 4.0 International (CC BY 4.0)</p> </li> </ul> </li> <li> <p><strong>pypsa_eur</strong></p> </li> <li> <p><strong>regions_dynamic_line_rating</strong></p> <ul> <li> <p>German regions suitable to model dynamic line rating</p> </li> <li> <p>source: Own representation based on <a href="https://www.transnetbw.de/files/pdf/netzentwicklung/netzplanungsgrundsaetze/UENB_PlGrS_Juli2020.pdf">Grunds&auml;tze f&uuml;r die Ausbauplanung des Deutschen &Uuml;bertragungsnetze (2020)</a></p> </li> <li> <p>License: Attribution 4.0 International (CC BY 4.0)</p> </li> </ul> </li> <li> <p><strong>re_potential_areas</strong></p> <ul> <li> <p>Eligible areas for wind turbines and ground-mounted PV systems.</p> </li> <li> <p>Reiner Lemoine Institut, January 2022</p> </li> <li> <p>License: Attribution 4.0 International (CC BY 4.0)</p> </li> </ul> </li> <li> <p><strong>wind_offshore_status2019</strong></p> <ul> <li> <p>&nbsp;</p> </li> </ul> </li> <li> <p><strong>WZ_definition</strong></p> <ul> <li> <p>Definitions of industrial and commercial branches</p> </li> <li> <p>source: <a href="https://www.destatis.de/static/DE/dokumente/klassifikation-wz-2008-3100100089004.pdf">Klassifikation der Wirtschaftszweige (WZ 2008)</a></p> </li> <li> <p>Extract from Terms of Use: &copy; Statistisches Bundesamt, Wiesbaden 2008 Vervielf&auml;ltigung und Verbreitung, auch auszugsweise, mit Quellenangabe gestattet.</p> </li> </ul> </li> <li> <p><strong>zensus_households</strong><strong> </strong></p> <ul> <li> <p>Dataset describing the amount of people living by a certain types of family-types, age-classes,sex and size of household in Germany in state-resolution.</p> </li> <li> <p>source: Data retrieved from <a href="https://ergebnisse2011.zensus2022.de/datenbank/online">Zensus Datenbank</a> by performing these steps:</p> <ul> <li> <p>Search for: "1000A-2029"</p> </li> <li> <p>or choose topic: "Bev&ouml;lkerung kompakt"</p> </li> <li> <p>Choose table code: "1000A-2029" with title "Personen: Alter (11 Altersklassen)/Geschlecht/Gr&ouml;&szlig;e desprivaten Haushalts - Typ des privaten Haushalts (nach Familien/Lebensform)"</p> </li> <li> <p>Change setting "GEOLK1" to "Bundesl&auml;nder (16)" higher resolution "Landkreise und kreisfreie St&auml;dte (412)" only accessible after registration.</p> </li> </ul> </li> <li> <p>Extract from Terms of Use: &copy; Statistische &Auml;mter des Bundes und der L&auml;nder 2021, Vervielf&auml;ltigung und Verbreitung, auch auszugsweise, mit Quellennachweis gestattet.</p> </li> </ul> </li> <li> <p><strong>zensus_population</strong></p> </li> <li> <p><strong>district_heating_shares_egon.csv</strong></p> </li> </ol>

openother-openNov 2023View details →
zenodo32/100

Model data for "The GERB Obs4MIPs Radiative Flux Dataset: A new tool for climate model evaluation", submitted to Earth System Science Data

<p>© Crown Copyright, Met Office</p><p>The E1hrClimMon files contain the monthly mean diurnal cycles of TOA radiative fluxes (all-sky and clear-sky) for amip experiment of two configurations of HadGEM3: GC3.1 and GC5.0. The monthly mean diurnal cycle is constructed by averaging each UTC hourly mean over the entire month. The HadGEM3 OLR diagnostics used in this study differ from those submitted to CFMIP3. The OLR diagnostics submitted to CFMIP3 contain a correction that accounts for the surface temperature adjustment by the boundary layer scheme in model time steps between radiation time steps. This OLR diagnostic adjustment is introduced to conserve energy, but it significantly distorts the diurnal cycle of OLR. For comparison with the GERB obs4MIPs products, the OLR without this correction is recommended.</p><p>The COSP file contains the average monthly climatologies for the variables cfadLidarsr532 and clisccp for the amip simulations of GC3.1 and GC5.0.</p>

openogl-uk-3.0Nov 2023View details →
zenodo32/100

Dataset for the article titled ""An Updated Parameterization of the Unstable Atmospheric Surface Layer in WRF Modeling System"".

<p>The dataset is organized in to five&nbsp;ZIP folders as described below:</p> <p>1. Offline_Exp_Data:&nbsp;This contains data for stability parameter (z/L), transfer coefficient for momentum (CD), and heat (CH) simulated from different experiments using the bulk flux algorithm (offline mode) corresponding to different similarity functions over smooth (z0 = 0.01 m), transition (z0 = 0.1 m), and rough (z0 = 1 m) surfaces.&nbsp;This dataset corresponds to Figure 4.</p> <p>2. Similarity_Functions:&nbsp;This contains data for the similarity functions for momentum and heat in gradient (Phi_m and Phi_h) as well as integrated (Psi_m and Psi_h) forms with stability parameter (z/L) for considered functional forms of similarity functions (e.g., Businger et al., 1971 (BD71); Carl et al., 1973 (CL73); Kader and Yaglom, 1990 (KY90); and Fairall et al., 1996 (F96)) under unstable conditions. The dataset corresponds to Figures 2 and S1 (supporting information).</p> <p>3. WRF_Data1:&nbsp;This contains hourly averaged data for considered variables from WRF model simulations during the MAM (March&ndash;April&ndash;May) season. This dataset can be used to reproduce Figures 9, 10, and 11.</p> <p>4. WRF_Data2:&nbsp;This contains model output for considered variables extracted during highly convective hours (z/L&lt;-10 over most of the domain) in the daytime. This dataset can be used to reproduce Figures 12, S3, S4, S5, and S6.</p> <p>5. WRF_Data3: This consists of data from different simulations (CTRL, Exp1-4) with the WRF model extracted at the location of the flux tower (23.412 N, 85.44 E (Ranchi), India). The dataset contains stability parameter (z/L), bulk Richardson number (RiB), transfer coefficients for momentum (CD) and heat (CH), sensible heat flux (HFX), 10-m wind speed (WS), u*2 (representative of momentum flux), and 2-m temperature (T2m). This dataset corresponds to Figures 5, 6, 7, 8, S2, S7, and S8.</p>

opencc-by-4.0Sep 2023View details →
zenodo32/100

Modelling of mid-IR on-chip Doppler FMCW LiDAR System

Open the record for dataset details and reuse information.

opencc-by-4.0Jan 2024View details →
zenodo32/100

Equation of State of Liquid Fe7C3 and Thermodynamic Modeling of the Liquidus Phase Relations in the Fe-C System

Open the record for dataset details and reuse information.

opencc-by-4.0Oct 2023View details →
zenodo32/100

The evaluation data and source codes of a new conceptual coupled Earth system model and the MOC box model.

<p>The dataset contains the results of a conceptual Atmosphere-Ocean-Ice-Land coupled Earth system model and a MOC box model and the evaluation data of their.</p>

opencc-by-4.0Jan 2024View details →
zenodo32/100

Global 1km Land Surface Parameters for Kilometer-Scale Earth System Modeling (SAI_2011_2015)

<p>Earth system models (ESMs) are progressively advancing towards the kilometer scale (k-scale). However, the surface parameters for Land Surface Models (LSMs) within ESMs running at the k-scale are typically derived from coarse resolution and outdated datasets. This study aims to develop a new set of global land surface parameters with a resolution of 1 km for multiple years from 2001 to 2020, utilizing the latest and most accurate available datasets. Specifically, the datasets consist of parameters related to land use and land cover, vegetation, soil, and topography. Differences between the newly developed 1k land surface parameters and conventional parameters emphasize their potential for higher accuracy due to the incorporation of the most advanced and latest data sources. To demonstrate the capability of these new parameters, we conducted 1 km resolution simulations using the E3SM Land Model version 2 (ELM2) over the contiguous United States. Our results demonstrate that land surface parameters contribute to significant spatial heterogeneity in ELM2 simulations of soil moisture, latent heat, emitted longwave radiation, and absorbed shortwave radiation. On average, about 31% to 54% of spatial information is lost by upscaling the 1 km ELM2 simulations to a 12 km resolution. Using eXplainable Machine Learning (XML) methods, the influential factors driving the spatial variability and spatial information loss of ELM2 simulations were identified, highlighting the substantial impact of the spatial variability and information loss of various land surface parameters, as well as the mean climate conditions. The comparison against four benchmark datasets indicates that ELM generally performs well in simulating soil moisture and surface energy fluxes. The new land surface parameters are tailored to meet the emerging needs of k-scale LSMs and ESMs modeling with significant implications for advancing our understanding of water, carbon, and energy cycles under global change.</p> <p>This data repository is linked to <a href="../records/10815170" target="_blank" rel="noopener">https://zenodo.org/records/10815170</a></p>

opencc-by-4.0Jan 2024View details →
zenodo32/100

Assessing the fate and behaviour of plant nutrients in aquaponic systems by chemical equilibrium modelling: A meta-analytical approach

<p>Cleaned dataset and Visual MINTEQ input files (without and without assumed presence of dissolved organic matter) for each record in the dataset.</p>

opencc-by-4.0Mar 2024View details →
zenodo32/100

Modeling and optimization via ICNNs: A chiller-pump system application

<p>A data set for the paper "A bilevel fast-convergent optimizer via high-fidelity convex models: Application on optimal operation of all-parallel heterogeneous chiller-pump systems", including modeling data collected from BAS and optimization results</p>

opencc-by-4.0Mar 2024View details →
zenodo32/100

AWESOME Energy System Model data and model

<p><span>This repository collects all the necessary items defined to setup and to run the Energy System optimization model for the AWESOME project.</span></p> <p><span>Detailed specifications of the adopted model (OSeMOSYS) and data are descripted in Deliverable D2.4 document: "</span><span>Future Energy Scenarios".</span></p> <p><span>In particular, the repository provides all essential data and scripts to define the energy model defined for projecting the energy scenarios developed for the AWESOME project. The document reports the development of an open-source energy system optimization model of the energy supply chain for the spatial domain useful for the AWESOME project (i.e. including Egypt, Ethiopia, and Sudan). The model is then used to explore different pathways of future energy scenarios in terms of energy demand and infrastructure evolution and their economic and environmental impacts. The future sectoral energy demand scenarios are developed based on the Socio-economic Pathways (SSPs) and the outcomes of D2.1 (Demographic projections), using a multi-sectoral optimal resource allocation economic model.&nbsp;</span></p> <p>This record contains:</p> <p>- The Deliverable D2.4, where the optimization model and the calculation of the energy system scenarios under different climatic scenarios are presented.</p> <p>- The results for each implemented scenario, in terms of installed capacity and energy generation of energy technologies (.tif files and excel files), for the Nile River Basin and at the national level for each focus country (Ethiopia, Sudan and Egypt).</p> <p>- Description of the data (excel file and pdf file)</p>

opencc-by-4.0Apr 2024View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record