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Fig. 96 in Classification, Natural History, and Evolution of the Subfamily Peloniinae O (Coleoptera: Cleroidea: Cleridae). Part IX. Taxonomic revision of the New World genus Muisca S
Fig. 96: Geographic distribution of Muisca species as listed.
Data from: A revised sectional classification of Plukenetia L. (Euphorbiaceae, Acalyphoideae) with four new species from South America
<p><span><span><span><span><span><span><span><span><span><span><span>We present a phylogenetic classification for <i>Plukenetia</i> (Euphorbiaceae, Acalyphoideae) based on morphology and molecular phylogenetic studies using nuclear (ETS, ITS, <i>KEA1 </i>introns 11 and 17, <i>TEB </i>exon 17) and plastid (<i>matK</i>, <i>ndhF</i>, <i>psbA-trnH</i>) DNA data. <i>Plukenetia</i> comprises 25 species divided into six sections, with three new sections and four new species described here. The circumscription of <i>Plukenetia</i> is unaltered from recent treatments and we continue to recognize <i>Romanoa </i>as distinct. The sections of <i>Plukenetia</i> correspond with the subclade system proposed by Cardinal-McTeague and Gillespie (2016): P1 = <i>P.</i> sect. <i>Fragariopsis</i> comb. et stat. nov.; P2 = <i>P.</i> sect. <i>Penninerviae</i> sect. nov.; P3 = <i>P.</i> sect. <i>Plukenetia</i>; P4 = <i>P.</i> sect. <i>Angostylidium</i>; and P5 = <i>P. </i>sect. <i>Hedraiostylus</i> + <i>P.</i> sect. <i>Madagascarienses </i>sect. nov. The sections are distinguished by a combination of leaf venation, staminate flower morphology, pistillate flower number, style morphology, fruit type, and seed size. Additionally, we describe three new species from South America belonging to sect. <i>Penninerviae</i>: <b><i>Plukenetia brevistyla </i></b>and<b><i> Plukenetia megastyla</i> </b>from the Amazon basin and <b><i>Plukenetia chocoensis</i></b>from the Chocó Biogeographic Region of Colombia. The new Amazonian species are morphologically similar to <i>P. brachybotrya</i> but distinguished by their style shape and size. The new Colombian species is morphologically similar to <i>P. penninervia</i> but distinguished by its elongate basilaminar extrafloral nectaries, presence of abaxial laminar extrafloral nectaries, and longer inflorescences. We also describe a new species from sect. <i>Plukenetia</i>, <b><i>Plukenetia sylvestris</i></b>, which is widespread in central and southern Peru. This species is suggested to be the wild progenitor of the cultivated <i>P. carolis-vegae</i>, differing by its smaller seeds/fruits and fewer stamens. Molecular data, including a new ETS phylogeny sampling <i>P. brevistyla</i>, support our new taxa as distinct. Keys to the sections and species of <i>Plukenetia</i> are provided<i> </i>and we designate 12 new lectotypes for <i>Plukenetia</i> and <i>Romanoa</i>.</span></span></span></span></span></span></span></span></span></span></span></p>
Table 1 in Revised classification of Acanthaceae and worldwide dichotomous keys
<p><b>Table 1.</b> Key morphological characters for the major lineages of Acanthaceae. Table includes some exceptions to general trends within a given lineage but is not comprehensive in terms of all exceptions that exist.</p><table><thead><tr><th>Character</th><th>Nelsonioideae</th><th>Avicennioideae</th><th>Thunbergioideae</th><th>Acantheae</th><th>Physacantheae</th><th>Andrographideae</th><th>Barlerieae</th><th>Neuracantheae</th><th>Whitfieldieae</th><th>Ruellieae</th><th>Justicieae</th><th>Character</th></tr></thead><tbody><tr><th>Cystoliths</th><td>Absent</td><td>Absent</td><td>Absent</td><td>Absent</td><td>Absent</td><td>Present</td><td>Present</td><td>Present</td><td>Present</td><td>Present</td><td>Present</td><td>Cystoliths</td></tr><tr><th>Corolla aestivation</th><td>Descendingcochlear</td><td>Left-contort, slightly imbricate, or valvate</td><td>Left-contort; rarely ascendingcochlear</td><td>Ascendingcochlear or “open”</td><td>Left-contort</td><td>Ascendingcochlear</td><td>Quincuncial</td><td>Induplicate</td><td>Left-contort</td><td>Left-contort</td><td>Ascending-cochlear</td><td>Corolla aestivation</td></tr><tr><th>No. of fertile stamens</th><td>2 or 4</td><td>4</td><td>4</td><td>4</td><td>4</td><td>2</td><td>2 or 4</td><td>4</td><td>2 (<i>Lankesteria</i>) or 4</td><td>2 or 4</td><td>2 or 4</td><td>No. of fertile stamens</td></tr><tr><th>No. of anther thecae per fertile stamen</th><td>2</td><td>2</td><td>2</td><td>1</td><td>1</td><td>2</td><td>2, or mixed 2×2-thecous and 2×1-thecous</td><td>Mixed 2×2-thecous and 2×1-thecous</td><td>2</td><td>2</td><td>1 or 2; if 4 stamens then 2-thecous or mixed 2×2-thecous, 2×1-thecous</td><td>No. of anther thecae per fertile stamen</td></tr><tr><th>Pollen characteristics</th><td>3-colpate to 3-colporate, pseudocolpi absent</td><td>3-colporate, pseudocolpi absent</td><td>Spiraperturate, 3–6-colpate, or 7–9-lobate and -colpate, pseudocolpi absent</td><td>Usually 3-colpate, sometimes with numerous short colpus-like apertures dividing grains into polygonal regions, rarely with pseudocolpi</td><td>3-colporate, 9-pseudocolpate</td><td>3-colporate, 3-pororate, ectoapertural membrane and/or thickened margin often with spines, pseudocolpi absent</td><td>Mostly 3-colporate or 3-porate, interapertural exine often coarsely reticulate, pseudocolpi absent <i>͡</i></td><td>3-colporate, interapertural exine finely perforate, pseudocolpi absent</td><td>Usually lenticular, 2-pororate with ectoaperture usually very large, sometimes 3-pororate or spherical and pantoforate, pseudocolpi absent</td><td>Diverse; germinal apertures 2 to many, porate to colporate or pantoforate; tectum often raised flanking apertures, pseudocolpi often present and usually more than 2 between germinal apertures</td><td>Diverse, germinal apertures 2–6, (porate to) pororate to colporate, pseudocolpi often present but rarely (if ever) more than 2 between germinal apertures</td><td>Pollen characteristics</td></tr><tr><th>Fruit characteristics</th><td>Mostly small capsules varying from thin- to thickwalled, sometimes rostrate</td><td>Leathery to fleshy capsule that is non-explosive, and tardily dehiscent</td><td>Large woody rostrate capsule; OR globose or ellipsoid drupe</td><td>Fusiform or shortly rostrate capsule</td><td>Linear capsule</td><td>Linear and 4-angular or compressed elliptic, oblanceolate or narrowly oblong capsule</td><td>Fusiform or rostrate capsule, rarely stipitate</td><td>Fusiform or rostrate capsule</td><td>Stipitate or fusiform capsule</td><td>Stipitate, linear or fusiform capsule</td><td>Stipitate, sometimes also shortly rostrate capsule</td><td>Fruit characteristics</td></tr><tr><th>Hooked retinacula</th><td>Absent</td><td>Absent</td><td>Absent</td><td>Present</td><td>Present</td><td>Present</td><td>Present</td><td>Present</td><td>Present</td><td>Present</td><td>Present</td><td>Hooked retinacula</td></tr><tr><th>No. of ovules*</th><td>8 to many</td><td>4</td><td>1, 2 or 4</td><td>4</td><td>6–10</td><td>4 to many</td><td>4</td><td>2 or 4</td><td>2 or 4</td><td>2–32</td><td>2 or 4</td><td>No. of ovules*</td></tr><tr><th>No. of seeds*</th><td>8–30 (–68)</td><td>1</td><td>1, 2 or 4</td><td>2–4</td><td>(4–) 6–10</td><td>4 to many</td><td>2–4</td><td>2–4</td><td>2–4</td><td>2–28</td><td>2–4</td><td>No. of seeds*</td></tr><tr><th>Seed sculpture / trichomes</th><td>Variably smooth, pitted, with minute protrusions and with or without hygroscopic trichomes (these simple or branched)</td><td>Smooth</td><td>Smooth or sculptured, with a prominent scar or hole on one side (in drupaceous genera, a woody stone)</td><td>Dense hygroscopic trichomes, dense scales or tuberculate, glandular puberulous, smooth or glabrous, or otherwise variable</td><td>With pale straight or flexuose papillae-like trichomes</td><td>With or without dense hygroscopic trichomes or non-hygroscopic trichomes, smooth or sculptured</td><td>Dense hygroscopic trichomes or fine?non-hygroscopic trichomes, rarely glabrous and smooth</td><td>Dense hygroscopic trichomes</td><td>Raised concentric rings at least towards the rim; glabrous or (<i>Lankesteria</i>) with hygroscopic trichomes</td><td>Dense hygroscopic trichomes or these restricted to the rim, rarely absent</td><td>Smooth or often sculptured (tubercles, spines, verrucae, etc.), and/or with hygroscopic or non-hygroscopic trichomes</td><td>Seed sculpture / trichomes</td></tr><tr><th>Other diagnostic or informative characters</th><td>Flowers often alternate to spirally arranged on inflorescence, although can be opposite</td><td>Mangrove shrubs or trees with pneumatophores, and plants cryptoviviparous</td><td>Often twiners; flowers subtended by paired clasping bracteoles</td><td></td><td>Leaves often variegated; long-cylindric or inflated calyx with short lobes</td><td></td><td>Cystoliths can occur in adjoining cells</td><td>Calyx bilabiate (anterior lip 2-notched, posterior lip 3-notched)</td><td>Inflorescence units often subtended by conspicuous paired clasping bracteoles</td><td>Filament curtain usually present, and thecae sometimes with basal appendages</td><td>Anther thecae sometimes offset to superposed and/or oblique, and one or both thecae sometimes with basal appendages</td><td>Other diagnostic or informative characters</td></tr></tbody></table>
A revised classification of Glossopetalon (Crossosomataceae) based on restriction site-associated DNA sequencing
Glossopetalon inhabits arid regions in the American west and northern Mexico on limestone substrates. The genus comprises four species: G. clokeyi ; G. pungens ; G. texense ; and G. spinescens . Three of the species are narrow endemics. The fourth, G. spinescens , is a widespread species with six recognized varieties. All six varieties are intricately branched shrubs that have been difficult to identify due to a lack of clearly delineating morphological characters. Characters typically used to differentiate the varieties of G. spinescens, such as stem coloration, leaf blade size, and presence of stipules, are highly variable within and among populations. A custom protocol of double digest restriction-site associated DNA sequencing (ddRAD) was used to resolve the phylogeny of Glossopetalon and address if population genetic data analyses (such as STRUCTURE, SVDquartets, and phylogenetic networks) support the recognition of six varieties of G. spinescens . Glossopetalon was fully supported as monophyletic and G. pungens was resolved sister to the remaining taxa in the genus. The varieties of G. spinescens were resolved as two distinct lineages corresponding to their biogeography – one to the northwest (lineage 1) and one to southeast (lineage 2). Glossopetalon clokeyi was resolved at the base of lineage 1 and G. texense was embedded within lineage 2 sister to var. spinescens . Taxonomic changes include the recognition of G. texense and G. clokeyi as varieties of G. spinescens and description of a unique population from northern Arizona as a new variety – G. spinescens var. goodwinii .
Supplementary Material Accompaning the Paper "A Revised Proposal of Proto-Tukanoan Consonants and Tukanoan Family Classification"
<p>This is the dataset that was used in Chacon (2014) publication.</p> <p>The data has been aligned using Edictor (List 2017).</p> <p>References</p> <p>Chacon, Thiago. 2014. ‘A Revised Proposal of Proto-Tukanoan Consonants and Tukanoan Family Classification <sup>1</sup>’. <em>International Journal of American Linguistics</em> 80 (3): 275–322. doi:10.1086/676393.</p> <p>List, Johann-Mattis. forthcoming. ‘A Web-Based Interactive Tool for Creating, Inspecting, Editing, and Publishing Etymological Datasets’. In <em>Proceedings of the 15th Conference of the European Chapter of the Association for Computational Linguistics. System Demonstrations</em>.</p>
Figure 2 in Revised classification design of the Anatolian species of Nannospalax (Rodentia: Spalacidae) using RFLP analysis
Figure 2. Principal coordinate analysis plot of the chromosomal races of Nannospalax.
Text-fig. 14: Classification of the Gobioninae according to Naseka (1996). in Revision Of The Cyprinids From The Early Oligocene Of The České Středohoří Mountains, And The Phylogenetic Relationships Of Protothymallus Laube, 1901 (Teleostei, Cyprinidae, Gobioninae)
Text-fig. 14: Classification of the Gobioninae according to Naseka (1996).
An integrated phylogenetic reassessment of the parasitoid superfamily Platygastroidea (Hymenoptera: Proctotrupomorpha) results in a revised familial classification
<p>The superfamily Platygastroidea (Hymenoptera: Proctotrupomorpha) is a diverse group of parasitoid wasps that attack nine orders of insects as well as spiders. They appear to show a clear pattern of host group specificity among genera. A robust phylogeny is essential to understanding the monophyly of and relationships among lower level groups and the pattern of the shifts among host groups. We conducted phylogenetic analyses of Platygastroidea based on four molecular markers (<i>18S</i>, <i>28S</i>, <i>COI</i>, and <i>wingless</i>) combined with 119 morphological characters, and a phylogenomic analysis of a subset of taxa based on 4,371 single-copy, protein-coding genes. The four-gene and morphological analyses robustly recovered some well-established groups, e.g., Platygastridae (in its traditional sense), Scelionini, Teleasinae and Telenominae, as well as some novel patterns of relationship. The ground-plan host for the superfamily are the eggs of Orthoptera, with possible parallel shifts to attack hosts in the Coleoptera, Diptera, Hemiptera and Mantodea. The basal relationships for the superfamily as well as relationships among genera traditionally classified in the scelionine tribes Baryconini, Calliscelionini and Psilanteridini were not supported. The phylogenomic analysis of representative basal taxa recovered a clear pattern of relationships with maximal bootstrap support. Based on the combination of these two approaches, we present a revised classification for Platygastroidea and recognize the following eight families: Geoscelionidae <strong>stat. rev.</strong>, Janzenellidae <strong>fam. nov.</strong>, Neuroscelionidae <strong>fam. nov.</strong>, Nixoniidae <strong>stat. rev.</strong>, Platygastridae <strong>stat. rev.</strong>, Proterosceliopsidae<sup>†</sup>, Scelionidae <strong>stat. rev. </strong>and Sparasionidae <strong>stat. rev.</strong></p>
Figures 223–226 in A review of the genera of Macariini with a revised classification of the tribe (Geometridae: Ennominae)
Figures 223–226. Digrammia species, ♀ genitalia: 223, 224, D. nigricomma; 225, 226, D. rippertaria.
Figures 136–138 in A review of the genera of Macariini with a revised classification of the tribe (Geometridae: Ennominae)
Figures 136–138. Semiothisa gambaria: 136, ♂ genitalia; 137, sternum A8 of ♂; 138, ♀ genitalia.
Figure 19 in Notes on South American stingless bees of the genus Scaptotrigona (Hymenoptera: Apidae), Part III: A revised infrageneric classification and new species
Figure 19. Lateral habitus of worker of Scaptotrigona (Gymnotrigona) hellwegeri (Friese).
Fig. 1 in Taxonomic Revision and Classification of Extant Holococcolithophores Previously Placed in the Genus Anthosphaera Kamptner emend. Kleijne 1991
Fig. 1. Map of the sampling locations, where Anthosphaera was observed.
A comprehensive molecular phylogeny of the genus Sylvirana (Anura: Ranidae) highlights unrecognized diversity, revised classification and historical biogeography
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A revised classification of the assassin bugs (Hemiptera: Heteroptera: Reduviidae) based on combined analysis of phylogenomic and morphological data
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An integrated phylogenetic reassessment of the parasitoid superfamily Platygastroidea (Hymenoptera: Proctotrupomorpha) results in a revised familial classification
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Data from: A revised sectional classification of Plukenetia L. (Euphorbiaceae, Acalyphoideae) with four new species from South America
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Data from: Phylogenomics and biogeography of the cleptoparasitic bee genus <em>Triepeolus</em> Robertson (Hymenoptera: Apidae), with a revised subgeneric classification of <em>Triepeolus</em> and its sister genus, <em>Epeolus</em> Latreille
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A revised classification of Glossopetalon (Crossosomataceae) based on restriction site-associated DNA sequencing
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FIGURES 6–9. Sugophytichnida pertusura Enushchenko and A in Revision of existing classification of fossil insect feeding traces and description of new ichnotaxa from Middle Jurassic sediments of Eastern Siberia (Russia)
FIGURES 6–9. Sugophytichnida pertusura Enushchenko and A. Frolov, ichnogen., ichnospec. nov. (specimen No Iya -2011- 14/17-2, Holotype): 6, 7—common view of S. pertusura, 8—S. pertusura, confied to the vein of Ginkgo tapkensis, 9—S. pertusura far from the vein of G. tapkensis.
A revised subgeneric classification of the neotropical genus Zapoteca (Caesalpinioideae; Fabaceae)
<p><span><span><span><span><span><span><span><span><span><span><span>The subgeneric classification of the neotropical legume genus <i>Zapoteca</i> is revised based on an analysis of the nuclear ETS and ITS, and the plastid <i>trnL</i>-<i>trnF</i> DNA-regions. Subgenus <i>Ravenia</i> is included in subg. <i>Zapoteca</i>, <i>Z</i>. <i>quichoi</i> is transferred from subg. <i>Amazonica</i> to subg. <i>Zapoteca</i>, <i>Z</i>. <i>sousae</i> is included in subg. <i>Zapoteca</i> and one new subgenus, subg. <i>Subamazonica</i>, is described to accommodate the species <i>Z</i>. <i>filipes</i> and <i>Z</i>. <i>scutellifera</i>. A key to the subgenera is presented.</span></span></span></span></span></span></span></span></span></span></span></p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.