Find research datasets worth reusing

opencc-by-4.0Nov 2020View details →

Fig. 2 in Postcranial osteology of the first early-stage juvenile skeleton of Plateosaurus trossingensis from the Norian of Frick, Switzerland

Fig. 2. Cervical vertebrae of juvenile Plateosaurus cf. trossingensis Fraas, 1913 skeleton MSF 15.8B. from the Norian of Frick, Switzerland. A. Cervical vertebra 2 (axis), MSF 15.8.2001, in left lateral (A1), dorsal (A2), anterior (A3), posterior (A4), and ventral (A5) views. B. Cervical vertebra 3, MSF 15.8.669 (neural arch) and MSF 15.8.936 (centrum), in left lateral (B1), dorsal (B2), anterior (B3), posterior (B4), and ventral (B5) views, C. Cervical vertebra 4, MSF 15.8.1032 (neural arch) and MSF 15.8.979 (centrum), in left lateral (C1), dorsal (C2), anterior (C3), posterior (C4), and ventral (C5) views. D. Cervical vertebra 6, MSF 15.8.2002 (neural arch) and MSF 15.8.592 (centrum), in left lateral (D1), dorsal (D2), ventral (D3), anterior (D4), and posterior (D5) views. E. Cervical vertebra 9, MSF 15.8.671 (neural arch) and MSF 15.8.905 (centrum), in left lateral (E1), dorsal (E2), ventral (E3), anterior (E4), and posterior (E5) views. F. Cervical vertebra 1 (atlas), MSF 15.8.2000, in?anterior view. Centra are omitted in ventral view to show neural arch. Scale bars 10 mm.

dryad40/100

Randomized controlled oncology trials with tumor stage inclusion criteria

Background: Extracting inclusion and exclusion criteria in a structured, automated fashion remains a challenge to developing better search functionalities or automating systematic reviews of randomized controlled trials in oncology. The question "Did this trial enroll patients with localized disease, metastatic disease, or both?" could be used to narrow down the number of potentially relevant trials when conducting a search. Dataset collection: 600 randomized controlled trials from high-impact medical journals were classified depending on whether they allowed for the inclusion of patients with localized and/or metastatic disease. The dataset was randomly split into a training/validation and a test set of 500 and 100 trials respectively. However, the sets could be merged to allow for different splits. Data properties: Each trial is a row in the csv file. For each trial there is a doi, a publication date, a title, an abstract, the abstract sections (introduction, methods, results, conclusion), several tags associated with the annotation process (text, _input_hash, _task_hash, options, _view_id, config, accept, answer, _timestamp, _annotator_id,_session_id), and the assigned labels (answer).

opencc-zeroJun 2024View details →

opencc-by-4.0Nov 2021View details →

Figure. Litsea anamalayana Robi & Udayan, sp. nov. A, Flowering twig; B, twig with unopened umbels; C, brachyblast with opened umbels; D, female flowers (close-up); E, tepals; F, outer eglandular staminodes and inner glandular staminodes; G, gynoecium; H, early stage of fruit setting; I, mature fruits. Photographs: A. J. Robi. in LITSEA ANAMALAYANA (LAURACEAE) A NEW SPECIES FROM NELLIYAMPATHY HILLS, INDIA.

Figure. Litsea anamalayana Robi & Udayan, sp. nov. A, Flowering twig; B, twig with unopened umbels; C, brachyblast with opened umbels; D, female flowers (close-up); E, tepals; F, outer eglandular staminodes and inner glandular staminodes; G, gynoecium; H, early stage of fruit setting; I, mature fruits. Photographs: A. J. Robi.

Figure 3 in Dynamics of arbuscular mycorrhizal fungi in relation to root colonization, spore density, and soil properties among different spreading stages of the exotic plant threeflower beggarweed (Desmodium triflorum) in a ZoysiO tenuifoliO lawn

Figure 3. Dynamics of the soil arbuscular mycorrhizal fungal spore density within Desmodium triflorum coverage levels and seasons.

Figure 6 in Dynamics of arbuscular mycorrhizal fungi in relation to root colonization, spore density, and soil properties among different spreading stages of the exotic plant threeflower beggarweed (Desmodium triflorum) in a ZoysiO tenuifoliO lawn

Figure 6. Conceptual framework demonstrating possible mechanisms of soil arbuscular mycorrhizal fungi (AMF) during the spreading process of Desmodium triflorum in the Zoysia tenuifolia lawn. Numbers 1, 2, 3, and 4 indicate different spreading stages of the invasive plant D. triflorum. Corresponding mycorrhizal structures were shown as the four microscopic views. Light-green and medium-yellow circles indicate AM fungal spores predominantly produced by the root mycorrhizal structures of Z. tenuifolia and D. triflorum, respectively. Medium-green and dark-yellow lines indicate the life cycle of spores in Z. tenuifolia plants and in D. triflorum plants, respectively. The AM fungi might influence the spread of D. triflorum by the following steps: (1) the early stage of the lawn's development with only Z. tenuifolia growing but without D. triflorum present. This occurs at the very beginning of the lawn establishment, and the AM fungal spores that previously existed in the lawn soil first infected the fine roots of Z. tenuifolia and completed the life cycle on their own. (2) The early spreading stage of D. triflorum (level 1). The roots of the two plants come into contact with each other, inducing the external hyphae that originally grow closely on the Z. tenuifolia roots to infect the roots of D. triflorum. The difference between the mycorrhizal infections of the two host plants contributes to higher root mycorrhizal colonizations of D. triflorum compared with Z.tenuifolia. However, at this stage,D. triflorum is not as competitive as Z. tenuifolia in the lawn, although it has advantages in terms of mycorrhizal infections. Therefore, the soil AM fungal spores are still predominantly produced by the mycorrhizal structures of the AMF-infected Z. tenuifolia roots. (3) The intermediate spreading stage of D. triflorum (levels 2 and 3). Desmodium triflorum continues to spread in the lawn. The contact of the two plants becomes more frequent and further induces a much closer relationship between the AM infections of the two plants. The increased D. triflorum plants in the lawn and the advantage of D. triflorum in root mycorrhizal infections facilitate the contribution of the mycorrhizal structures of the D. triflorum roots to sporulation. Thus, in this stage, the soil AM fungal spores were produced by the mycorrhizal structures of both plants, thereby inducing insignificant correlations between the spore densities and the root colonizations of either Z. tenuifolia or D. triflorum. (4) The late spreading stage of D. triflorum (levels 4 and 5). Desmodium triflorum is dominant in the lawn.The large numbers of D. triflorum plants and the AM infection advantage of D. triflorum facilitate AMF sporulation in the soil, thereby inducing significant correlations between the spore densities and the root colonizations of D. triflorum. At the different spreading stages of D. triflorum, the soil AM fungal communities also change as a result of the changed contributions of the AMF-infected host plants to the sporulation.

Figure 5 in Dynamics of arbuscular mycorrhizal fungi in relation to root colonization, spore density, and soil properties among different spreading stages of the exotic plant threeflower beggarweed (Desmodium triflorum) in a ZoysiO tenuifoliO lawn

Figure 5. The relative abundance and community composition at the family (A) and species levels (B) of arbuscular mycorrhizal fungi (AMF) in soils of different Desmodium triflorum coverage levels.

Figure 2 in Dynamics of arbuscular mycorrhizal fungi in relation to root colonization, spore density, and soil properties among different spreading stages of the exotic plant threeflower beggarweed (Desmodium triflorum) in a ZoysiO tenuifoliO lawn

Figure 2. Dynamics of the total, hyphal, and vesicular colonizations of Zoysia tenuifolia and Desmodium triflorum among different D. triflorum coverage levels and seasons. "Season," "Coverage," and "Species" indicate ANOVA results of each indicator among seasons and D. triflorum coverage levels and between the two plants, respectively.

Figure 4 in Dynamics of arbuscular mycorrhizal fungi in relation to root colonization, spore density, and soil properties among different spreading stages of the exotic plant threeflower beggarweed (Desmodium triflorum) in a ZoysiO tenuifoliO lawn

Figure 4. Correlations among the root mycorrhizal colonizations, arbuscular mycorrhizal fungal spore densities ("AMF spore density"), and soil properties in different coverage levels of Desmodium triflorum. ZTC, ZHC, and ZVC in light-green circles indicate the total colonization (TC), hyphal colonization (HC), and vesicular colonization (VC) of Zoysia tenuifolia, respectively. DTC, DHC, and DVC in light-red circles indicate the TC, HC, and VC of D. triflorum, respectively. Green lines and green-colored numbers indicate significant correlations between the colonization indicators of Z. tenuifolia and corresponding correlation coefficients, respectively. Red lines and red-colored numbers indicate significant correlations between the colonization indicators of Z. tenuifolia and corresponding correlation coefficients, respectively. Dark-green double arrows and dark-green numbers indicate the correlations between the colonizations of Z. tenuifolia and those of D. triflorum and corresponding correlation coefficients, respectively. Light-blue double arrows and light-blue numbers indicate the correlations between the spore densities and soil properties/root colonizations and corresponding correlation coefficients,respectively. Darkyellow double arrows and dark-yellow numbers indicate the correlations between the soil properties and root colonizations and corresponding correlation coefficients, respectively. Correlation is significant at: *P <0.05; **P <0.01; ***P <0.001. The minus sign indicates a negative correlation. Insignificant correlations are not shown.

Figure 1 in Dynamics of arbuscular mycorrhizal fungi in relation to root colonization, spore density, and soil properties among different spreading stages of the exotic plant threeflower beggarweed (Desmodium triflorum) in a ZoysiO tenuifoliO lawn

Figure 1. Dynamics of the soil physiochemical properties (average ± SE, n = 5) within different Desmodium triflorum coverage levels and seasons. "Season" and "Coverage" indicate ANOVA results of each indicator among seasons and D. triflorum coverage levels, respectively. Level 1, level 2, level 3, level 4, and level 5 indicate the coverage levels of D. triflorum in the Zoysia tenuifolia lawn, respectively, in this and all following figures.

opencc-by-4.0Jun 2024View details →

Supplement to "Discriminating non-stationary flood hazard effects via probabilistic estimation of sparse residuals from rescued and rated stage–discharge data"

This supplement contains the data and script associated with “Sparse hydrometric data rescue for exploratory analyses of conveyance-driven flood hazard trends and controls,” which has been submitted to a journal for consideration. This supplement is deposited on Zenodo.   Code, Data, and Attribute Descriptions   Uploaded are five directories (indicated in bold font, with their contents detailed below) containing input data and various outputs of the analyses performed for our case study on the Pulangi River at Lumayong (Philippines). Please consider this description equivalent to an omnibus README file for the deposited files. Note that we collected and rescued the hydrometric data herein from the archives of the Water Projects Division (WPD) of the Philippine Department of Public Works and Highways (DPWH).   ●      Pln_R_code contains (1) Pln_RC.R, the R script file, and (2) 240601_Pln_RC.RData, which stores objects generated from the script based on the last execution (on 1 June 2024). The script consists of admittedly too many lines of code (e.g., for data wrangling, formal analyses, and producing figures used in the manuscript) that should have been split into multiple .R files. Apologies. Please be guided by the outline and the comments and kindly reach out lest issues with the code arise.   ●      Pln_GH_PDFs contains the scanned gaugekeeper’s reports of gauge heights (“stages”).    ○      The name of each file varies. For example, Pln-GH-1100.pdf contains daily stage readings for all months in the year 2011. But, if the last two digits are not zeroes, as in Pln-GH-1204.pdf, they refer to the month of that year; in this case, for example, the PDF file contains stage data for the month of April in the year 2012. ○      Each scanned sheet contains sub-daily (with readings at “AM,” “NOON,” and “PM”) and mean daily stages for a given month. ○      Also indicated are the gaugekeeper’s remarks on the daily weather (e.g., “fair,” “cloudy”). Under inclement weather, the gaugekeeper would note the duration of rainfall and its intensity and might, at times, record extra stage readings.   ●      Pln_DM_PDFs contains the following PDF files and a sub-directory: ○      Pln-DM-<XXXXXX>.pdf contains the scanned log for each direct stage—discharge measurement, otherwise known as “gaugings.” Each file is named according to the date of gauging (YYMMDD). For example, the log for the gauging performed on 24 February 2011 can be found in the file Pln-DM-110224.pdf. Data from these gaugings are summarized in Pln-DM-filtered.csv in the Pln_In_CSVs directory. ■      The readability of each file varies based on the original quality of the original paper-format data. ■      The first page in each file contains, on the left side, a summary of the gauging data and metadata (e.g., date of measurement, number of gauging verticals or “sections” used, method of crossing or measuring the cross-section), and on the right side, the velocity—area readings at each gauging vertical. ■      The second page in each file contains the plotted cross-section of the channel at the time of measurement. ○      Pln-RC.pdf contains various other paper-format data and some annotations relevant to the historical rating at the station. ■      P. 1: The hydrographic engineer’s comment (dated 19 January 2012) on the evaluation of the discharge data, specifically detailing the periods of validity of the rating curves developed for different sub-periods of monitoring. ■      PP. 2—3: A summary table of all the gaugings performed from 1983 to 2010 whose logs were no longer retrievable (and hence not included as a DM-PDF file in this directory). ■      PP. 4—5: Plots of the official stage—discharge rating curves developed by DPWH hydrographers. ■      PP. 6—8: Rating tables used to convert daily mean stages to deterministic discharge estimates. Two of these rating tables were digitized and can be found in the Pln_RatingTables sub-directory in Pln_In_CSVs. ■      PP. 9—22: Daily stage (m) and its corresponding daily discharge (L/s) for the 2004—2010 sub-period. The stages were digitized and included in Pln-H_arch.csv in the Pln_In_CSVs directory. ○      Pln_DM_unused contains the PDF files of logs (including data and metadata) corresponding to the gaugings that were excluded from our analysis following our filtering step for gauging location consistency.   ●      Pln_In_CSVs contains the following CSV files and two sub-directories; these files were used as inputs to the R script for formal analyses: ○      Pln-H_arch.csv contains the mean daily stage values [“H_bar_arch”] (m) for every day in the 2004—2020 sub-period [“Date”] (YYYY-MM-DD). The stages in this file are already corrected for gross errors. ○      Pln-DM-filtered.csv contains the following information on the gaugings performed on the Pulangi at Lumayong (1983—2020): (i) date [“Date”] (YYYY-MM-DD); (ii) stage [“H”] (m); (iii) discharge in L/s [“Q_lps”] and m3/s [“Q_cms”]; (iv) wetted area [“A_sqm”] (m2); (v) mean flow velocity [“Vel_mps”] (m/s); (vi) channel width [“W_m”] (m); (vii) mean flow depth [“D_ave_m”] (m); (viii) location of the measurement cross-section with respect to the staff gauge, with negative values meaning downstream of the gauge and positive values meaning upstream of the gauge [“XS_loc_wrt_gage”]; (ix) maximum flow depth [“Max_Depth_m”] (m); and (x) minimum streambed elevation [“MINSBE”] (m). Note that this file includes only gaugings that passed our filtering step for measurement location consistency. ○      Pln-DM_oview.csv contains information on the temporal coverage (bounded by “Start_date” and “End_date”) of the available hydrometric data from the station archives. ○      Pln-H_sample_GrossE_corr.csv contains a sample sub-period (2017-06-15 through 2017-11-30) and the corresponding values of stages (m), uncorrected [“H_uncorrected”] and corrected for gross errors [“H_corrected”]. This CSV file was used as an input to the R script to produce one of the figures in the manuscript.  ○      Pln-XS-csv.csv contains data on the gauging transects: gauging ID [“GaugingID”]; date [“Date”] (YYYY-MM-DD); lateral distance from a fixed initial point [“Lat_distance”] (m); width of the gauging vertical [“Width_vert..m.”] (m); depth relative to the water surface [“Depth..m.”] (m); stage at the gauging vertical [“H_m_vert..m.”] (m); and elevation with respect to a fixed arbitrary datum at the station [“Elev..m.”] (m). ○      Pln_Rating_Tables contains two rating tables, Pln-DM - RatingTable_A.csv and Pln-DM - RatingTable_B.csv, prepared and used by DPWH hydrographers for converting stage values to deterministic discharge estimates for the Pulangi River at Lumayong for the 1980s—early 2000s sub-period. Each rating table contains columns for stage [“H”], discharge in L/s [“Q_lps”], and discharge in m3/s [“Q_cms”]. ○      Pln_Q_rated contains two CSV files: Pulangi.csv has the columns “YEAR”, “DAY”, and every month of the year [“JAN” through “DEC”] for the 1983—2003 sub-period, with the values under each month column indicating the deterministic discharge estimates in L/s; Pulangi_trunc.csv contains similarly formatted data, but for the 2009—2010 sub-period.   ●      Pln_Out_CSVs contains two CSV files, the primary outputs of the hydrometric data rescue effort. ○      Pln_Q_recon.csv contains the reconstructed discharge time series (1983—2020) and its associated uncertainties at the 95% credibility interval. It has the following columns: date [“Date”] (YYYY-MM-DD); daily stage [“H”] (m); lower bound of the discharge estimate [“Q_lwr”] (m3/s); median discharge estimate [“Q_med”] (m3/s); and the upper bound of the discharge estimate [“Q_upr”] (m3/s). Pln_H_recon.csv contains the reconstructed and quality-controlled stage time series (1983—2020). It has the following columns: date [“Date”] (YYYY-MM-DD); mean daily stage that has been corrected for gross errors, but not yet filtered through other quality checks [“H_bar_arch”] (m); quality check for low outliers [“Low_Outlier”] (TRUE/FALSE); quality check for flatliners [“Flatliner”] (TRUE/FALSE); difference between the stage values on day i and day i-1 [“Daily_Step”] (m); quality check for large steps [“Large_Step”] (TRUE/FALSE); and the corrected and quality-controlled mean daily stage values [“H”] (m).

opencc-zeroJun 2024View details →

Dataset: Garden Stage Limited (GSIW) Stock Performance

This dataset provides historical stock market performance data for specific companies. It enables users to analyze and understand the past trends and fluctuations in stock prices over time. This information can be utilized for various purposes such as investment analysis, financial research, and market trend forecasting.

opencc-by-4.0Nov 2023View details →

Fig. 2. Pamphilius benesi. —— A in Immature Stages and Life History of a Hazel Leaf-rolling Sawfly, Pamphilius benesi (Hymenoptera, Pamphiliidae)

Fig. 2. Pamphilius benesi. —— A, Eggs, remains of eggshell and newly hatched larva beginning to make leafroll, Group B, June 5; B, C, early instar larva, June 7; D, E, middle instar larva, June 14; F, late instar larva, June 23; G, H, J, late instar larva, June 21; I, late instar larva, June 28. All photographed by Kato.

opencc-by-4.0Nov 2023View details →

Fig. 1. Pamphilius benesi. —— A in Immature Stages and Life History of a Hazel Leaf-rolling Sawfly, Pamphilius benesi (Hymenoptera, Pamphiliidae)

Fig. 1. Pamphilius benesi. —— A, Ovipositing female on leaf of Corylus sieboldiana, Group Ab, May 29; B, three eggs, Group Aa, May 29; C, remains of six eggshells, Group Aa and Ab, and leaf-roll made by young larvae, June 6; D, larvae inside the same leaf-roll, June 6; E, ovipositing female on leaf of C. sieboldiana, Group B, May 29; F, leaf with five eggs, Group B, May 29; G, eggs of Group B, possible marks of sticky substance arrowed, May 29. All photographed by Kato.

Figs 45–48 in Morphology Of Developmental Stages Of Philonthus Fumarius (Gravenhorst, 1806) (Coleoptera, Staphylinidae) With Notes On Biology

Figs 45–48. Ph. fumarius, imago. 45 = Habitus; 46-48 = aedeagus in dorsal aspect (46), lateral aspect (47) and ventral aspect (48).

Figs 29–32 in Morphology Of Developmental Stages Of Philonthus Fumarius (Gravenhorst, 1806) (Coleoptera, Staphylinidae) With Notes On Biology

Figs 29–32. Ph. fumarius, mature larva. 29 = Abdominal segment IX and X in dorsal aspect (Ug – urogomphus, 1, 2… – codes of setae); 30 = abdominal segment IX and X in ventral aspect (Ug – urogomphus, 1, 2… – codes of setae); 31 = abdominal segment IX and X in lateral aspect (Ug – urogomphus, A – microstructure of abdominal segment X); 32 = urogomphus (I, II – segments, 1,

Figs 24–28 in Morphology Of Developmental Stages Of Philonthus Fumarius (Gravenhorst, 1806) (Coleoptera, Staphylinidae) With Notes On Biology

Figs 24–28. Ph. fumarius, mature larva. 24 = pronotum (I) and mesonotum (II) (Cs – coeloconic sensillum); 25 = prothorax in ventral aspect (Cr – cervicosternum with microstructure [A], Sn – sternite); 26 = abdominal tergite I and II (a, b, c – pores, 1, 2… – codes of setae, Ca – coeloconic sensilla); 27 = abdominal segments I and II in lateral aspect (Ps – parasternite, Pt – paratergite, Sp – spiracle, St – sternite Te – tergite); 28 = abdominal sternite I and II (1, 2… – codes of setae, a, b, c –

Figs 20–23 in Morphology Of Developmental Stages Of Philonthus Fumarius (Gravenhorst, 1806) (Coleoptera, Staphylinidae) With Notes On Biology

Figs 20–23. Ph. fumarius, mature larva. 20 = Hypopharynx; 21 = labium in ventral aspect (Lg – ligula, Pmnt – prementum, Pl – labial palp, I-III – segments of labial palp); 22 = fore femur (Fe) and tibia (Tb) with tarsungulus (Tu) in anterior aspect (a, b – codes of pores, 1, 2, … – codes of setae); 23

Figs 10–14 in Morphology Of Developmental Stages Of Philonthus Fumarius (Gravenhorst, 1806) (Coleoptera, Staphylinidae) With Notes On Biology

Figs 10–14. Ph. fumarius, head, mature larva. 10 = Head in dorsal aspect (a–c – pores, E – epicranial part, Gl – gland, Gp – glandular pit, Na – nasale, P – posterior part, 1, 2. – codes of setae); 11 = head in ventral aspect (Ap – apotome, Tp – tentorial pit); 12 = apotome (Ap) and tentorial pits (Tp) (Gp - glandular pit); 13 = right antenna in dorsal aspect (I-IV – antennal segments); 14 = apical part of right antenna in dorsal aspect (Sa – sensory appendage, So – solenidia, III and IV – antennal segments)

Figs 36–44 in Morphology Of Developmental Stages Of Philonthus Fumarius (Gravenhorst, 1806) (Coleoptera, Staphylinidae) With Notes On Biology

Figs 36–44. Ph. fumarius, pupa. 36 = Microstructure of abdominal sternite; 37 = functional spiracles of third pair; 38, 39 = atrophied spiracles of abdominal segment VI (38) and VII (39); 40 = lateral cuticular structure of first abdominal tergite; 41 = lateral margin of abdominal segment IX in female; 42, 43 = terminal prolongation (Tp); 44 = apical part of ventral abdominal prolongation in female.

Figs 15–19 in Morphology Of Developmental Stages Of Philonthus Fumarius (Gravenhorst, 1806) (Coleoptera, Staphylinidae) With Notes On Biology

Figs 15–19. Ph. fumarius, head, mature larva. 15 = nasale in dorsal aspect (Mt – median tooth, Og – olfactory organ, Pmt – paramedian tooth); 16 = epipharynx; 17 = right mandible in dorsal aspect; 18 = right maxilla in dorsal aspect (Cd – cardo, Ma – mala, Pf – palpifer, Pm – maxillary palp, St – stipes, I–IV maxillary palp segments); 19 = anterior part of stipes in dorsal aspect (Ma – mala, Pf – palpifer, Pm – maxillary palp, St – stipes)