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Data sources and code for: "Species-specific acclimation capacity of key traits explains global vertical distributions of seagrass species"
<p>Minguito-Frutos_etal_2023_Data1.xlsx contains the data for analyzing the relationship between plant size and seagrass growth reproductive strategy and the species-specific vertical distribution of seagrasses. </p> <p>Minguito-Frutos_etal_2023_Data2.xlsx contains the data for the meta-analityc approach studying the relationship between the vertical distribution of seagrass species and the plasticity of their traits (physiological, morphological, structural and growth). </p> <p>Scripts_Minguito_Frutos_etal_2023_GEB_Ref.GEB-2022-0592.R contains the R reproducible code to run all the analyses carried out in this study. </p>
UAV-Based Height Measurement and Height-Diameter Model integrating Taxonomic Effects: Exploring Vertical Structure of Aboveground Biomass and Species Diversity in a Malaysian Tropical Forest
<p>These Excel files are the dataset used for the analysis in the submitted paper</p> <p>Dataset S1: Data for 6-ha pot in Pasoh Forest Researve</p> <p>Dataset S2: Data for height–diameter (HD) models</p>
Effects of long-term fixed fire regimes on African savanna vegetation biomass, vertical structure and tree stem density
<ol> <li><span>Fire plays an integral role in shaping the vegetation structure of savanna ecosystems. However, effects of fire regime characteristics, such as frequency and season of burn, on savanna vegetation structure, biomass and tree abundance across landscape types are largely unknown. </span></li> <li><span>We used high-resolution airborne Light Detection and Ranging (LiDAR) to investigate the long-term effects of fire manipulation on savanna vegetation in Kruger National Park, South Africa. We analysed the effects of fire exclusion and experimental burns every 1, 2, 3, 4 and 6 years and during different seasons on aboveground biomass (AGB), tree stem densities and vegetation vertical height profiles across a rainfall gradient and on contrasting geologies. </span></li> <li><span>Across savanna types, and especially in drier savannas, fire season was more influential for constraining AGB than was fire frequency. Plots experiencing fires during the late- and mid-dry season had 44.50% and 43.60%, respectively, lower AGB relative to unburnt plots than wet-season fires. However, in mesic savannas, fire frequency interacted with fire season to influence AGB: plots subjected to high frequency, dry season fires had 55.35% lower AGB than unburnt plots, whereas plots burnt in the wet season at lower frequencies had lower AGB (24.40% lower than unburnt plots) than plots subjected to high frequency, wet-season fires (13.74% lower AGB than unburnt plots). </span></li> <li><span>Fire regimes had variable effects on tree densities, and effects varied with savanna type. Woody vertical vegetation profiles showed the largest differences in response to dry season fires, with the greatest divergence in vegetation height classes < 5m. </span></li> <li><span><em>Synthesis and applications</em>. Understanding the influence of fire regimes on vegetation structure has important implications for the management of savanna heterogeneity, and for predicting trajectories of change in savanna vegetation as fire regimes vary with climate change. We show that the magnitude of the effect of fire on woody vegetation structure varies with savanna context. Our results suggest that heterogeneous vegetation structure can be achieved by applying fires in the dry season in mesic savannas, whereas in dry savannas, variation in fire regimes is less consequential for constraining biomass accumulation and altering vegetation structure. </span></li> </ol>
North Atlantic vertical velocity estimates from OGCM geostrophic meridional velocities
<p>Annual vertical velocity (w_GLVB) estimates from OGCM geostrophic velocities within the North Atlantic ocean during the 1960-2015 period.</p> <p>The w fields are computed following the methodology described in <em>Cortés-Morales and Lazar, submitted.</em></p> <p>----------------------------------------------------------------------------------------</p> <p>Geographical coverage: North Atlantic Ocean [107ºW-25ºE/12ºS-75ºN]</p> <p>Grid and horizontal spatial resolution: 1/4º (ORCA025 grid)</p> <p>Vertical levels: 58 levels from sigma level 21 to 28.05 kg m<sup>-3</sup></p> <p>Temporal resolution: Annual (1960-2015)</p> <p>-----------------------------------------------------------------------------------------</p> <p>Variables:</p> <p>nav_lon (2D)</p> <p>nav_lon (2D)</p> <p>isop_level (1D)</p> <p>time (1D)</p> <p>w_GLVB (4D)</p>
Roles of regional transport and vertical mixing in aerosol pollution in Shanghai over the COVID-19 lockdown period observed above urban canopy
<p>Abstract</p> <p>Regional transport and vertical mixing are important for aerosol pollution of megacities, but their roles are often challenging to assess via ground observations. In this study, we measured aerosol chemical composition simultaneously above urban canopy (Shanghai Tower, 609 m), a site representative of aerosols from regional scale, and a nearby ground site and investigated the roles of regional transport and vertical mixing over 2020 COVID-19 lockdown period (Jan.1-Apr. 18), when local emissions were first drastically reduced and then recovered. During the lockdown period, regional transport was the major source of most aerosol species (organics, NO<sub>3</sub><sup>-</sup>, SO<sub>4</sub><sup>2-</sup>, and NH<sub>4</sub><sup>+</sup>) at both heights according to the high correlation coefficients (R=0.81~0.87) between both heights. Correlation coefficients and vertical ratios (609 m/ground) of most aerosol components showed similar diurnal variations with the evolution of planetary boundary layer height, indicating the role of vertical mixing in aerosol pollution. Moreover, the concentrations of aerosol components at 609 m generally preceded those at ground level by 1~2 h, indicating that aerosols were first transported at upper boundary layer, and then were mixed downwards to ground level. At 609 m, highly oxidized oxygenated organic aerosol (OOA; a surrogate of secondary organic aerosol (SOA)) dominated in organic aerosol (≥75%). The high correlations (R=0.96) between OOA and hydrocarbon-like organic aerosol (HOA; a surrogate of primary organic aerosol (POA)) at 609 m indicated that they originated similarly from regional transport. This study highlights the importance of regional joint prevention and control of pollutant emissions and observation above urban canopy.</p> <p> </p> <p>The data files are provided for readers to evaluate this research.</p>
Data from: The effect of initial vortex asymmetric structure on tropical cyclone intensity change in response to an imposed environmental vertical wind shear
<p>Previous studies have investigated how the environmental vertical wind shear (VWS) may trigger the asymmetric structure in an initially axisymmetric tropical cyclone (TC) vortex and how TC intensity changes in response. In this study, the possible effect of the initial vortex asymmetric structure on the TC intensity change in response to an imposed environmental VWS is investigated based on idealized full-physics model simulations. Results show that the effect of the asymmetric structure in the initial TC vortex can either enhance or suppress the initial weakening of the TC in response to the imposed environmental VWS. When the initial asymmetric structure is in phase of the VWS-induced asymmetric structure, the TC weakening will be enhanced and vice versa. Our finding calls for realistic representation of initial TC asymmetric structure in numerical weather prediction models and observations to better resolve the asymmetric structure in TCs.</p>
Dataset used in the paper "Verifying the parameterization of vertical eddy viscosity and diffusivity in the bottom boundary layer"
<p>This dataset is created from the data obtained over the continental shelf of the East China Sea in July 2020 during a cruise of the training ship Nagasaki-maru of Nagasaki University (NN055), and used in the manuscript entitled "Verifying the parameterization of vertical eddy viscosity and diffusivity in the bottom boundary layer" by Takahiro Endoh, Takuya Hirooka, and Yoshinobu Wakata, which will be submitted to Journal of Physical Oceanography.</p>
Water-related vertical displacements for all GNET stations studied
<p>Water-related vertical displacements for all GNET stations studied. Vertical displacement time-series from the proposed analytic model, based on calibrated buffered water storage estimates.(1 column: Time; 2 column: Vertical displacement; 3 column: error)</p>
Vertically inherited microbiota and environment-modifying behaviors indirectly shape the exaggeration of secondary sexual traits in the gazelle dung beetle
<p><span>Many organisms actively manipulate the environment</span><span> in ways that have the potential to feed back on their own development, a process referred to as developmental niche construction</span><span>. Yet, </span><span>the role that constructed biotic and abiotic environments play in shaping phenotypic variation and its evolution is insufficiently understood. Here, we assess whether environmental modifications made by developing dung beetles impact the environment-sensitive expression of secondary sexual traits</span><span>.</span> <span>Larval gazelle dung beetles both physically modify their ontogenetic environment and structure their biotic interactions through the vertical inheritance of microbial symbionts. By experimentally eliminating i) physical environmental modifications, and ii) the vertical inheritance of microbes, we assess the degree to which (sym)biotic and physical environmental modifications shape the exaggeration of several traits </span><span>varying in their degree and direction of sexual dimorphism. We expected the experimental reduction of a larva's ability to shape its environment to affect trait size and scaling, especially for traits that are sexually dimorphic and environmentally plastic</span><span>. </span><span>We find that compromised developmental niche construction indeed shapes sexual dimorphism in overall body size and the absolute sizes of male-limited exaggerated head horns, the strongly sexually dimorphic fore tibia length and width, as well as the weakly dimorphic elytron length and width. This suggests that ontogenetic environmental modifications affect sex-specific phenotypic variation in functional traits. However, most of these effects can be attributed to nutrition-dependent plasticity in size and non-isometric trait scaling, rather than body-size-independent effects on the developmental regulation of trait size. Our findings suggest that the reciprocal relationship between developing organisms, their symbionts, and their environment can have considerable impacts on sexual dimorphism and functional morphology. </span></p>
Arresting Vertical Transmission of Hepatitis B Virus
ClinicalTrials.gov study NCT03567382. IPD Sharing: NO. Countries: 1. Publications: 1.
Comparing of the Clinical Outcome of Periodontal Accelerated Osteogenic Orthodontics With Horizontal or Vertical Releasing Incisions
ClinicalTrials.gov study NCT05441683. IPD Sharing: YES. Countries: 1. Publications: 0.
Effects of the FIFA11+ Warm-up Program on Speed, Agility, and Vertical Jump Performance in Adult Female Amateur Soccer Players
ClinicalTrials.gov study NCT03683758. IPD Sharing: NO. Countries: 1. Publications: 3.
Stratified vertical sediment profiles increase burrowing crab effects on salt marsh edaphic conditions
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Thermal stratification and fish thermal preference explain vertical eDNA distributions in lakes
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Data from: Vertical niche usage and trait associations in Gabonese amphibians
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Data from: Spatiotemporal dynamics of the ant community in a dry forest differ by vertical strata but not by successional stage
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Data from: Community-level trait variation of epiphytic bryophytes supports trade-off aligned with leaf-economic spectrum in vertically stratified tropical montane cloud forest canopies
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Vertical structural complexity of plant communities represents the combined effects of resource acquisition and environmental stress on the Tibetan Plateau
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Data from: Tunable anti-ambipolar vertical bilayer organic electrochemical transistor enable neuromorphic retinal pathway
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Vertical stratification of leaf physical traits exerts bottom-up pressures on insect herbivory in a sugar maple temperate forest
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.