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WFO Plant List JSON Datasets 2018 to 2022
<p>Every six months the <a href="http://www.worldfloraonline.org/">World Flora Online</a> publishes a new checklist of plant names. The checklist is available at <a href="https://doi.org/10.5281/zenodo.7467360">doi:10.5281/zenodo.7467360</a></p> <p>In December 2022 the publication mechanism began to include the data in JSON format for direct import into a <a href="https://solr.apache.org/">SOLR</a> index. As part of this change JSON format files were created for the previous data releases so that they can be imported into the same SOLR index as those from December 2022 onwards. This archive contains those JSON files.</p> <p>It is be possible to create the full history of the WFO Plant List in a SOLR index by loading these files followed by the JSON files provided in each data release from December 2022 onward.</p> <p> </p>
FIGURE 6. 3D in Perennial shrubs in Egypt: current status and updated red data list
FIGURE 6. 3D scatter plot showing the ordination of the recorded species along habitat, geographical, and abundance gradients.
FIGURE 4 in Perennial shrubs in Egypt: current status and updated red data list
FIGURE 4. Number of shrubs in the Egyptian flora in relation to the national phyto-geographical regions. S: Sinai Peninsula, M: Mediterranean coastal region, GE: Gebel Elba region, N: Nile region including Delta, Valley, and Faiyum, O: Oases of the western desert, D: All deserts of Egypt except that of Sinai, and R: Red Sea region.
Jeu de données Unimarc entités - liste de résultats
<p>Suite à des expérimentations réalisées à partir du jeu de données Unimarc entités du groupe Systèmes et Données de la Transition bibliographique, expérimentations documentées sur le blog https://bibliotheques.wordpress.com et récupérables sur Github (https://github.com/Lully/metadata_notebooks/tree/main/UnimarcLRM et https://github.com/Lully/metadata_notebooks/tree/recherche/UnimarcLRM), voici un lot de pages HTML qui imitent une liste de résultats (fichier short_results_o.html) avec navigation vers les notices détaillées.</p> <p>C'est un état intermédiaire du travail, présenté en journée plénière des groupes de la Transition bibliographique le 24 janvier 2023.</p> <p>Le fichier contient un ensemble de fichiers HTML qui sont les notices détaillées, liées entre elles ; ainsi que des fichiers JSON, qui sont ces mêmes notices en JSON, donnant à voir la manière dont elles sont utilisées par le programme.</p> <p>Il est possible de commencer la navigation en ouvrant le fichier form.html, qui contient des formulaires de recherche. Ces formulaires ne fonctionnent pas mais "miment" le fonctionnement d'une recherche en affichant une liste de résultats.</p> <p>2 affichages de listes de résultats sont possibles : par oeuvres et par expressions.</p> <p>Autant que possible, si on choisit l'affichage par expressions, on doit rester dans des expressions (fond vert) ; idem pour l'affichage par oeuvres (fond rouge), mais ce n'est pas complètement cohérent encore. Un billet de blog sur https://bibliotheques.wordpress.com rend compte de ce projet</p>
HapMap3 SNP-list
<p>This is a gzipped copy of the HapMap3 SNP-list provided by the Alkes Group, originally available at https://data.broadinstitute.org/alkesgroup/LDSCORE/w_hm3.snplist.bz2.</p> <p> </p>
A complete list of filtered variants and gene lists of frequently and recurrently mutated genes in 25 MCL patients at diagnosis compared to relapse, as well as a CNV genelist
<p>Supplemental Table 1 shows a complete list of variants which passed filtering described in supplemental methods, that were found in both diagnostic samples and relapsed samples (i.e., shared variants, sheet 1A), variants that were newly detected – N/D (sheet 1B) or newly undetected – N/U (sheet 1C). Gene lists for filtration of variants and CNV changes in genes of special interest are included in the table (sheet 1D). Chr - Chromosome, REF - Reference allele, ALT - Alternative allele, AA change - Amino acid change, DG_AF – Variant Allele frequency in the diagnostic sample, DG_Depth - Read depth in the diagnostic sample, REL_AF - Variant Allele frequency in the relapsed sample, REL_Depth - Read depth in the relapsed sample, SNV - Single Nucleotide Variant, and CNV - Copy Number Variation. </p>
QT_Stakeholder_Preliminary_List
<p>The dataset contains a manually constructed preliminary list of stakeholders in quantum technologies that might be relevant for value-sensitive design practices. This is not an exhaustive list of all the stakeholders in the QT domain. Some overall information regarding the contents of the dataset is given below:</p> <p> </p> <table> <tbody> <tr> <td> <p><strong>Type of data</strong></p> </td> <td> <p><strong>Number of entries</strong></p> </td> </tr> <tr> <td> <p><strong>NGOs/Communities</strong></p> </td> <td> <p><strong>42</strong></p> </td> </tr> <tr> <td> <p><strong>QT Start-ups and SMEs</strong></p> </td> <td> <p><strong>460</strong></p> </td> </tr> <tr> <td> <p><strong>Public Organisations</strong></p> </td> <td> <p><strong>5</strong></p> </td> </tr> <tr> <td> <p><strong>Venture Capital</strong></p> </td> <td> <p><strong>127</strong></p> </td> </tr> <tr> <td> <p><strong>Professional/Trade Association</strong></p> </td> <td> <p><strong>5</strong></p> </td> </tr> <tr> <td> <p><strong>Partnership/Consortia</strong></p> </td> <td> <p><strong>14</strong></p> </td> </tr> <tr> <td> <p><strong>Manifestos/reports</strong></p> </td> <td> <p><strong>8</strong></p> </td> </tr> <tr> <td> <p><strong>Major Companies involved in QT</strong></p> </td> <td> <p><strong>19</strong></p> </td> </tr> <tr> <td> <p><strong>ELSI Researchers</strong></p> </td> <td> <p><strong>34</strong></p> </td> </tr> <tr> <td> <p><strong>ELSI Groups</strong></p> </td> <td> <p><strong>20</strong></p> </td> </tr> <tr> <td> <p><strong>Media and journalists</strong></p> </td> <td> <p><strong>5</strong></p> </td> </tr> </tbody> </table>
FIGURE 4. Gaultheria natmataungensis. A. Flowering branchlet. B. Leaf, abaxial view. C in Gaultheria (Ericaceae) of Myanmar: an updated species list for the country, a new species, and a new species combination
FIGURE 4. Gaultheria natmataungensis. A. Flowering branchlet. B. Leaf, abaxial view. C. Petiole with adjacent branchlet and base of leaf blade, showing short setae. D. Flower. E. Gynoecium and nectary disk. F. Stamen, ventral view. G. Stamen, lateral view. H. Immature fruiting calyx and capsule, showing bracetoles. I. Mature fruiting calyx and capsule (bracteoles not shown). A–D based on K. Fujikawa et al. 090559 (BRIT); E–G based on K. Fujikawa et al. 086581 (MBK); H, I based on K. Fujikawa et al. 089541 (BRIT). Illustration by Samantha Peters.
FIGURE 3. Gaultheria natmataungensis. A. Flowering branchlets. B. Fruiting branchlets. C in Gaultheria (Ericaceae) of Myanmar: an updated species list for the country, a new species, and a new species combination
FIGURE 3. Gaultheria natmataungensis. A. Flowering branchlets. B. Fruiting branchlets. C. Leaves and inflorescence. Photographs by KF.
FIGURE 2. Gaultheria insignis. A. Flowering branchlet. B in Gaultheria (Ericaceae) of Myanmar: an updated species list for the country, a new species, and a new species combination
FIGURE 2. Gaultheria insignis. A. Flowering branchlet. B. Portion of leaf showing abaxial surface and margin. C. Inflorescence. D. Pedicel, bracteoles, and flower. E. Stamen, ventral view. F. Stamen, dorsal view. G. Dentate nectar disk and gynoecium. Based on K. Armstrong et al. 4036 (BRIT). Illustration by Samantha Peters.
FIGURE 1. Gaultheria insignis. A. Flowering branchlet. B in Gaultheria (Ericaceae) of Myanmar: an updated species list for the country, a new species, and a new species combination
FIGURE 1. Gaultheria insignis. A. Flowering branchlet. B. Leaf, abaxial view, and inflorescence. C. Leaf, adaxial view. D. Inflorescence. K. Armstrong et al. 4036. Photographs by KEA.
FIGURE 4. Plant lists. A in Redux Sellow: revealing Sellow's collections from the Herbier Impérial du Brésil at the Paris Herbarium
FIGURE 4. Plant lists. A. Central & South America, 1867–86, volume 18. B. Folio 226: Brazil, herb. Dr A. R. Ferreira. Com. Oct. 1874. (List of rare and unmatched specimens retained for Herbarium). Source: K.
An annotated list of horizon scanned technologies with potential for application in alien species citizen science projects
<p><strong>Context</strong></p> <p>The contribution of volunteers in recording invasive alien species (IAS) has been fostered by technological developments such as social media, apps, low-cost sensors, search engines and predictive analytics. These technology developments, an increased attention to citizen science and a cultural change towards collaboration and openness in research within the policy agenda should increase the contribution of volunteer recording. Within the framework of the COST Action CA17122 <a href="https://www.ceh.ac.uk/our-science/projects/alien-csi"><em>Increasing Understanding of Alien Species through Citizen Science</em></a> (<a href="https://doi.org/10.3897/rio.4.e31412">Roy et al. 2018</a>) a group of researchers explored the value of emerging technologies for citizen science in the context of alien species, recognizing the contribution of volunteers and reviewing their potential to engage broad audiences, motivate volunteers, improve data collection, increase data quality etc.</p> <p><strong>Survey</strong></p> <p>The following criteria were then used to evaluate the potential of these technologies for alien species citizen science through a dedicated <a href="https://forms.gle/9GQJctnAbPLKyxDE7">survey</a>:</p> <p>● <em><strong>Audience</strong></em>: the technology can attract new target audiences for IAS citizen science and/or support more inclusivity in IAS citizen science (can overcome inequalities in participation, attract under-privileged audiences/those underrepresented in the scientific enterprise, allow participation of sensory/cognitive/otherwise impaired...)<br> ● <em><strong>Engagement </strong></em>with others: the technology supports better connections with other participants, helpful in building a community<br> ● <em><strong>Engagement via feedback</strong></em>: the technology increases the quality, amount or rate of feedback (including supporting learning) to participants<br> ● <strong><em>Application</em></strong>: the technology can be embedded in everyday life and therefore has the potential for wide, generic application</p> <p>● <em><strong>New data</strong></em>: the technology yields new types of data that would not be available without the technology (improved the detectability of IAS, new types of data, species interactions, new information sources)<br> ● <strong><em>Extends data</em></strong>: the technology expands the scope of data collection or analysis (e.g. better coverage spatially, temporally)<br> ● <strong><em>Improves data quality</em></strong>: the technology improves species ID, reduces uncertainty, improves validation<br> ● <strong><em>Improves the flow of data</em></strong>: the technology increases the speed of record transmission (e.g. for early warning)<br> ● <strong><em>Improves the curation of data</em></strong>: the technology itself allows for improved data curation (better metadata, sustainability and long term preservation data, open data, tracked provenance of data, FAIR data management, enable to better credit citizen scientists for their data contributions)</p> <p><strong>Dataset description</strong></p> <p>This dataset represents the list of technologies (in the broadest sense, including approaches) that were identified collectively by the experts as being relevant technologies in the framework of (alien species) citizen science. The dataset includes the following fields:</p> <ul> <li><em>Name</em>: name of the approach/technology</li> <li><em>Category</em>: broad categorisation of the approach/technology (Hardware and infrastructure, data collection and analysis tools, tools to improve user experience). If some approaches are combinations this is mentioned in description.</li> <li><em>Description</em>: a definition and/or description of the approach/technology</li> <li><em>Reference</em>: a reference on the approach/technology (e.g. paper, online reference), mostly with a doi</li> <li><em>Example</em>: an example of the approach/technology, mostly with reference to an (alien species) citizen science project that applied it</li> <li><em>Notes: </em>any further remarks</li> </ul>
PubChem lists to Study the Exposome of Mild Cognitive Impairment and Alzheimer's Disease on Cerebrospinal Fluid
<p>Collection of 4 lists of chemicals associated to Alzheimer's disease (AD) and related disorders. </p> <p>The following table describes the mentioned lists. </p> <table> <tbody> <tr> <td>Name</td> <td>Description</td> </tr> <tr> <td>AD-database</td> <td>Database of 41,917 chemicals related to AD and other neurodegenerative disorders. CIDs co-ocurring with the 27 selected MeSH terms (*see below) were merged and mapped to the parent CIDS.</td> </tr> <tr> <td>TOP1</td> <td>List of 1,268 chemicals having D000544 (AD MeSH code) as the first neighbor .</td> </tr> <tr> <td>SC20</td> <td>List of 247 chemicals created after truncating by 1/20 of the maximum co-ocurrence score of the chemical neighbors for D000544. </td> </tr> <tr> <td>AD-CTD</td> <td>List of 86 chemicals specifically related to AD in the Comparative Toxicogenomic Database (CTD)</td> </tr> </tbody> </table> <p> *Selected MeSH terms for the AD-database: D000647,D000647,D000647,D000647,D000647,D000647,D000647,D000647,D000647,D000647,D000647,D000647,D000647,D000647,D000647,D000647,D000647,D000647,D000647,D000647,D000647,D000647,D000647,D000647,D000647,D000647 and D000647.</p> <p>HMDB-CSF can be downloaded <a href="https://csfmetabolome.ca/downloads"><strong>here</strong></a>.</p> <p>PubChemLite for Exposomics (version 1.12.0) can be found <a href="https://doi.org/10.5281/zenodo.6936117"><strong>here</strong></a>.</p>
Supplementary material 3 from: Ramírez-Bautista A, Torres-Hernández LA, Cruz-Elizalde R, Berriozabal-Islas C, Hernández-Salinas U, Wilson LD, Johnson JD, Porras LW, Balderas-Valdivia CJ, González-Hernández AJX, Mata-Silva V (2023) An updated list of the Mexican herpetofauna: with a summary of historical and contemporary studies. ZooKeys 1166: 287-306. https://doi.org/10.3897/zookeys.1166.86986
Territorial area, percentage territorial of county, and total number of species of amphibians, reptiles, and herpetofauna of each state in Mexico
List of SHARAD type-III burst candidate based on cross-detections with STEREO and Wind
<p>Complete list of SHARAD type-III burst candidate based on cross-detections with STEREO and Wind, including products in which a burst was not seen.</p>
List of significantly differentially expressed genes (p.ajust < 0.01, |log2FC| > 0.3).
<p>DEGs were obtained by pair-wise differential expression analysis of <em>Lactobacillus johnsonii </em>N6.2 total lipid stimulation vs. the vehicle control. Table is provided as an xlsx file.</p>
APPENDIX F: Full List of Historical Structures in Sta. Cruz, Manila (NHCP, 2022)
<p>APPENDIX F: Full List of Historical Structures in Sta. Cruz, Manila (NHCP, 2022) for Memoryscapes in Recto-spection: Visualizing Avenida, Recto, and Carriedo, Manila as Virtual Memoryscapes through immersive mobile technologies and digital heritage interpretation. Thesis Adviser: Dr. Cathe Desiree S. Nadal, Ph. D.</p>
APPENDIX G: Full List of Historical Structures in Quiapo, Manila (NHCP, 2022)
<p>APPENDIX G: Full List of Historical Structures in Quiapo, Manila (NHCP, 2022) for Memoryscapes in Recto-spection: Visualizing Avenida, Recto, and Carriedo, Manila as Virtual Memoryscapes through immersive mobile technologies and digital heritage interpretation. Thesis Adviser: Dr. Cathe Desiree S. Nadal, Ph. D.</p>
APPENDIX C: PRECUP MAPAMANA: Full list of Culturally and Historically Significant Heritage Assets and Sites in Recto Avenue (NCCA, 2022)
<p>APPENDIX C: PRECUP MAPAMANA: Full list of Culturally and Historically Significant Heritage Assets and Sites in Recto Avenue (NCCA, 2022) for Memoryscapes in Recto-spection: Visualizing Avenida, Recto, and Carriedo, Manila as Virtual Memoryscapes through immersive mobile technologies and digital heritage interpretation. Thesis Adviser: Dr. Cathe Desiree S. Nadal, Ph. D.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.