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4,144 results for “ITS barcode”
Figure 3 from: Gere J, Kowiyou Y, Daru B, Mankga L, Maurin O, van der Bank M (2013) Incorporating trnH-psbA to the core DNA barcodes improves significantly species discrimination within southern African Combretaceae. ZooKeys 365: 129-147. https://doi.org/10.3897/zookeys.365.5728
Figure 3 - Comparisons of the distribution range of inter- versus intraspecific distances using boxplot a indicates comparison of single barcode gene regions b indicates the results of gene combinations.
Figure 1 from: Gere J, Kowiyou Y, Daru B, Mankga L, Maurin O, van der Bank M (2013) Incorporating trnH-psbA to the core DNA barcodes improves significantly species discrimination within southern African Combretaceae. ZooKeys 365: 129-147. https://doi.org/10.3897/zookeys.365.5728
Figure 1 - Selected inflorescences of seven Combretum species indicating closely related species evaluated based upon floral characters. A Combretum paniculatum B Combretum microphyllum C Combretum platypetalum D Combretum hereroense E Combretum apiculatum F Combretum molle G Combretum kraussii. All photographs by O. Maurin.
Figure 4 from: Gere J, Kowiyou Y, Daru B, Mankga L, Maurin O, van der Bank M (2013) Incorporating trnH-psbA to the core DNA barcodes improves significantly species discrimination within southern African Combretaceae. ZooKeys 365: 129-147. https://doi.org/10.3897/zookeys.365.5728
Figure 4 - Relationships between inter- and intraspecific distances indicating barcoding gap for all regions tested.
Figure 2 from: Gere J, Kowiyou Y, Daru B, Mankga L, Maurin O, van der Bank M (2013) Incorporating trnH-psbA to the core DNA barcodes improves significantly species discrimination within southern African Combretaceae. ZooKeys 365: 129-147. https://doi.org/10.3897/zookeys.365.5728
Figure 2 - Selectedmature dry four-winged fruits of closely related species of genus Combretum. A Combretum mkuzense B Combretum microphyllum C Combretum englerii D Combretum apiculatum E Combretum moggii F Combretum albopunctatum G Combretum collinum. All photographs by O. Maurin.
Supplementary figure 2 from: Jordaens K, Sonet G, Braet Y, de Meyer M, Backeljau T, Goovaerts F, Bourguignon L, Desmyter S (2013) DNA barcoding and the differentiation between North American and West European Phormia regina (Diptera, Calliphoridae, Chrysomyinae). ZooKeys 365: 149-174. https://doi.org/10.3897/zookeys.365.6202
Supplementary figure 2 - Neighbour-Joining tree (p-distances) of a 404 bp (229 bp without indels) fragment of the nuclear internal transcribed spacer 2 (ITS2). Bootstrap values ≥ 70% are shown at the nodes. N gives the number of specimens of that haplotype. EU = Phormia regina haplotypes from W Europe; NA = Phormia regina haplotypes from N America.
Supplementary figure 1 from: Jordaens K, Sonet G, Braet Y, de Meyer M, Backeljau T, Goovaerts F, Bourguignon L, Desmyter S (2013) DNA barcoding and the differentiation between North American and West European Phormia regina (Diptera, Calliphoridae, Chrysomyinae). ZooKeys 365: 149-174. https://doi.org/10.3897/zookeys.365.6202
Supplementary figure 1 - Neighbour-Joining tree (p-distances) of a 350 bp (A) and of a 251 bp (B) fragment of the mitochondrial 16S gene. Bootstrap values ≥ 70% are shown at the nodes. N gives the number of specimens of that haplotype. EU = Phormia regina haplotypes from W Europe; NA = Phormia regina haplotypes from N America.
Figure 4 from: Jordaens K, Sonet G, Braet Y, de Meyer M, Backeljau T, Goovaerts F, Bourguignon L, Desmyter S (2013) DNA barcoding and the differentiation between North American and West European Phormia regina (Diptera, Calliphoridae, Chrysomyinae). ZooKeys 365: 149-174. https://doi.org/10.3897/zookeys.365.6202
Figure 4 - Neighbour-Joining tree (p-distances) of a 512 bp fragment of the mitochondrial cytochrome b (cyt b) gene. Bootstrap values ≥ 70% are shown at the nodes. N gives the number of specimens of that haplotype. EU = Phormia regina haplotypes from W Europe; NA = Phormia regina haplotypes from N America.
Figure 3 from: Jordaens K, Sonet G, Braet Y, de Meyer M, Backeljau T, Goovaerts F, Bourguignon L, Desmyter S (2013) DNA barcoding and the differentiation between North American and West European Phormia regina (Diptera, Calliphoridae, Chrysomyinae). ZooKeys 365: 149-174. https://doi.org/10.3897/zookeys.365.6202
Figure 3 - Neighbour-Joining tree (p-distances) of a 472 bp fragment of the mitochondrial cytochrome c oxidase subunit II (COII) gene. Bootstrap values ≥ 70% are shown at the nodes. N gives the number of specimens of that haplotype. EU = Phormia regina haplotypes from W Europe; NA = Phormia regina haplotypes from N America.
Figure 2 from: Jordaens K, Sonet G, Braet Y, de Meyer M, Backeljau T, Goovaerts F, Bourguignon L, Desmyter S (2013) DNA barcoding and the differentiation between North American and West European Phormia regina (Diptera, Calliphoridae, Chrysomyinae). ZooKeys 365: 149-174. https://doi.org/10.3897/zookeys.365.6202
Figure 2 - Neighbour-Joining tree (p-distances) of a 655 bp fragment of the mitochondrial cytochrome c oxidase subunit I (COI) gene. Bootstrap values ≥ 70% are shown at the nodes. N gives the number of specimens of that haplotype. EU = Phormia regina haplotypes from W Europe; NA = Phormia regina haplotypes from N America.
Figure 1 from: Jordaens K, Sonet G, Braet Y, de Meyer M, Backeljau T, Goovaerts F, Bourguignon L, Desmyter S (2013) DNA barcoding and the differentiation between North American and West European Phormia regina (Diptera, Calliphoridae, Chrysomyinae). ZooKeys 365: 149-174. https://doi.org/10.3897/zookeys.365.6202
Figure 1 - Lateral (top) and dorsal (bottom) view of the male copulatory organs of Phormia regina from W Europe (left) and N America (right) with a detail of the penis (middle).
Supplementary figure 3 from: Jordaens K, Sonet G, Braet Y, de Meyer M, Backeljau T, Goovaerts F, Bourguignon L, Desmyter S (2013) DNA barcoding and the differentiation between North American and West European Phormia regina (Diptera, Calliphoridae, Chrysomyinae). ZooKeys 365: 149-174. https://doi.org/10.3897/zookeys.365.6202
Supplementary figure 3 - Neighbour-Joining tree (p-distances) of a 633 bp fragment of the nuclear 28S gene. Bootstrap values ≥ 70% are shown at the nodes. N gives the number of specimens of that haplotype. EU = Phormia regina haplotypes from W Europe; NA = Phormia regina haplotypes from N America.
Figure 3 from: Stahls G, Laiho J (2013) DNA barcodes identify Central-Asian Colias butterflies (Lepidoptera, Pieridae). ZooKeys 365: 175-196. https://doi.org/10.3897/zookeys.365.5879
Figure 3 - Neighbour-Joining tree using the Tamura-Nei model with gamma distributed rates for the RpS2 sequences.
Figure 2 from: Mankga L, Kowiyou Y, Moteetee A, Daru B, van der Bank M (2013) Efficacy of the core DNA barcodes in identifying processed and poorly conserved plant materials commonly used in South African traditional medicine. ZooKeys 365: 215-233. https://doi.org/10.3897/zookeys.365.5730
Figure 2 - Evaluation of barcode gaps in matK, rbcLa and rbcLa + matK for commonly used medicinal plants of South Africa. A Boxplots indicate the genetic variation between interspecific distance and intraspecific distance; the boxplots clearly shows significant differences between inter- and intraspecific distances for all gene regions tested (P < 0.001; see text) B Lineplot of the barcode gap for the commonly used plants in South African medicine. For each gene region, the grey lines correspond to the furthest intraspecific distance (bottom of line value), and the closest interspecific distance (top of line value). The red lines show where this relationship is reversed, i.e. cases where there is no barcode gap.
Figure 3 from: Marescaux J, Van Doninck K (2013) Using DNA barcoding to differentiate invasive Dreissena species (Mollusca, Bivalvia). ZooKeys 365: 235-244. https://doi.org/10.3897/zookeys.365.5905
Figure 3 - RFLP analysis of the COI gene to distinguish Dreissena rostriformis bugensis (Q haplotype) and Dreissena polymorpha (Z haplotype) using the endonucleases (A) Nla IV (B) Hinf I (C) Nla III and (D) Scr FI. Lane 1, 1-kb ladder; lane 2, non-digested fragment of quagga mussel; lane 3, Q1 haplotype; lane 4, Q2 haplotype; lane 5, Z1 haplotype; lane 6, Z2 haplotype; lane 7, Z3 haplotype; lane 8, Z4 haplotype; lane 9, Z5 haplotype; lane 10, 100-bp ladder.
Figure 1 from: Marescaux J, Van Doninck K (2013) Using DNA barcoding to differentiate invasive Dreissena species (Mollusca, Bivalvia). ZooKeys 365: 235-244. https://doi.org/10.3897/zookeys.365.5905
Figure 1 - Barcoding analysis based on a fragment of 654 base pairs of the COI gene. a) NJ analysis of K2P-pairwise distances b) "barcoding gap" method based on the K2P-pairwise distance.
Figure 1 from: Mankga L, Kowiyou Y, Moteetee A, Daru B, van der Bank M (2013) Efficacy of the core DNA barcodes in identifying processed and poorly conserved plant materials commonly used in South African traditional medicine. ZooKeys 365: 215-233. https://doi.org/10.3897/zookeys.365.5730
Figure 1 - Examples ofmedicinal herbs bought at Faraday muthi market in Johannesburg A different medicinal herbs in bags B Seeds of Entada rheedii (tindili) C mixed herbs (fembo) D A twig of Adenia gummifera (mphinde umshaye) E Barks of Vachellia sp. (umkhanya-kute) F Bulb of Boophane disticha (umqotho) G mixed herbs H Myrothamnus flabellifolius (vuka) I Barks of Vachellia sp. (umkhanya-kute) J Sarcostemma viminale (ube nam) K Plant of Clivia sp. (mayime) L Stangeria eriopus (imfingo) M mixed herbs (isihlalakahle) N Tuber (umbonsi) O Helichrysum sp. (impepo) and P Twigs of Synadenium cupulare (umdletshane). Names in brackets are vernacular names in isiZulu.
Figure 2 from: Marescaux J, Van Doninck K (2013) Using DNA barcoding to differentiate invasive Dreissena species (Mollusca, Bivalvia). ZooKeys 365: 235-244. https://doi.org/10.3897/zookeys.365.5905
Figure 2 - Haplotype networks based on a fragment of 654 base pairs of the COI gene. Our seven haplotypes are labelled: Q1 and Q2 for haplotypes 1 and 2 (belonging to Dreissena rostriformis bugensis) / Z1 to Z5 for the 5 other haplotypes (belonging to Dreissena polymorpha).
Figure 8 from: Smit J, Reijnen B, Stokvis F (2013) Half of the European fruit fly species barcoded (Diptera, Tephritidae); a feasibility test for molecular identification. ZooKeys 365: 279-305. https://doi.org/10.3897/zookeys.365.5819
Figure 8 - The Neighbour-Joining tree of the genus Campiglossa with Sphenella marginata as outgroup inferred from COI barcodes. Bootstrap values above 50 (1000 replicates) are given at the nodes.
Figure 9 from: Smit J, Reijnen B, Stokvis F (2013) Half of the European fruit fly species barcoded (Diptera, Tephritidae); a feasibility test for molecular identification. ZooKeys 365: 279-305. https://doi.org/10.3897/zookeys.365.5819
Figure 9 - The Neighbour-Joining tree of the genus Orellia inferred from COI barcodes. Bootstrap values above 50 (1000 replicates) are given at the nodes.
Figure 3 from: Miller J, Beentjes K, van Helsdingen P, IJland S (2013) Which specimens from a museum collection will yield DNA barcodes? A time series study of spiders in alcohol. ZooKeys 365: 245-261. https://doi.org/10.3897/zookeys.365.5787
Figure 3 - DNA concentration (log10 transformed) for specimens in the time series study that yielded or failed to yield a successful DNA barcode sequence arranged by A body size B year collected. Successes (filled circles) and failures (while circles) partitioned into destructive (red) and nondestructive (blue) DNA extraction methods.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
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International Brain Laboratory public data
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OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.