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7,370 results for “supplementation”
Fig. S13 in A lost world in Wallacea: Description of a montane archipelagic avifauna (supplement)
Fig. S13. Holotype of Cyornis omissus omississimus (MZB.Ornit.34.483).
Fig. S15 in A lost world in Wallacea: Description of a montane archipelagic avifauna (supplement)
Fig. S15. Holotype of Ficedula hyperythra betinabiru (MZB.Ornit.34.377).
Fig. S14 in A lost world in Wallacea: Description of a montane archipelagic avifauna (supplement)
Fig. S14. Holotype of Turdus poliocephalus sukahujan (MZB.Ornit.34.374).
Fig. S1 in A lost world in Wallacea: Description of a montane archipelagic avifauna (supplement)
Fig. S1. Holotype of Rhipidura habibiei (MZB.Ornit.34.461).
Supplement 3: Modern coordinates of the Pontus coastal points mentioned by Ptolemy
<p>Supplement 3 to the paper "<strong>The Configuration of the Pontus</strong><strong> Euxinus in Ptolemy’s <em>Geography</em></strong>" submitted to the History of Geo- and Space Sciences (URL: <a href="https://www.history-of-geo-and-space-sciences.net/">https://www.history-of-geo-and-space-sciences.net</a>). The paper is a part of the research project “Development of the Methods for Analysis of the Historical Maps” supported by the Russian Foundation for Basic Research (grant 18-011-00258-a). <em>Correspondence</em>: Dmitry A. Shcheglov (shcheglov@yandex.ru).</p>
Supplement 2: Length of the Pontus coastline according to Menippus', Arrian's, and Pseudo-Arrian's distance data
<p>Supplement 2 to the paper "<strong>The Configuration of the Pontus</strong><strong> Euxinus in Ptolemy’s <em>Geography</em></strong>" submitted to the History of Geo- and Space Sciences (URL: <a href="https://www.history-of-geo-and-space-sciences.net/">https://www.history-of-geo-and-space-sciences.net</a>). The paper is a part of the research project “Development of the Methods for Analysis of the Historical Maps” supported by the Russian Foundation for Basic Research (grant 18-011-00258-a). <em>Correspondence</em>: Dmitry A. Shcheglov (shcheglov@yandex.ru).</p>
Supplement 1: Length of the Pontus coastline according to the Ξ and Ω recensions of Ptolemy's Geography and a corrected version of the Ξ recension
<p>Supplement 1 to the paper "<strong>The Configuration of the Pontus</strong><strong> Euxinus in Ptolemy’s <em>Geography</em></strong>" submitted to the History of Geo- and Space Sciences (URL: <a href="https://www.history-of-geo-and-space-sciences.net/">https://www.history-of-geo-and-space-sciences.net</a>). The paper is a part of the research project “Development of the Methods for Analysis of the Historical Maps” supported by the Russian Foundation for Basic Research (grant 18-011-00258-a). <em>Correspondence</em>: Dmitry A. Shcheglov (shcheglov@yandex.ru)</p>
Dataset supplementing Einhäuser, W., Atzert, C., & Nuthmann, A. (2020). Fixation durations in natural scene viewing are guided by peripheral scene content. Journal of Vision.
<p>These files supplement the publication</p> <p>Einhäuser, W., Atzert, C., & Nuthmann, A. (2020). Fixation durations in natural scene viewing are guided by peripheral scene content. Journal of Vision.</p> <p><br> The files fixationsByImg_Exp1.mat, fixationsByImg_Exp2.mat and saccadesByImage_Exp2.mat are Matlab (The MathWorks, Inc.) data files that contain the data as described below. To exemplify their usage, the functions figure2.m through figure5.m output the paper’s data figures. All functions were tested using Matlab version 9.6.0 (R2019a) on Windows 10 and on Ubuntu 14.04.</p> <p>All files can be used free of charge for scientific purposes, provided the aforementioned publication is appropriately cited.</p> <p><br> fixations_Exp1.mat contains the variables describing each fixation of experiment 1</p> <p>dFixByImAndCon - fixation duration in ms<br> tFixByImAndCon - start time of fixation relative to image onset in ms<br> xFixByImAndCon - x position on the screen<br> yFixByImAndCon - y position on the screen</p> <p>Notes:<br> - All variables have the dimensions subject (20) x image (60) x colorCondition (2 - grayscale/color) x contrastCondition (5) x fixation number in trial (50).<br> - dFixByImAndCon(:,:,:,:,1), etc. denotes the first fixation _ending_ after image onset, so tFixByImAndCon(:,:,:,:,1) will be negative.<br> - missing data are filled by NaN<br> - x,y position is relative to the screen (1920x1080), not relative to the image, which was presented in the screen center</p> <p> </p> <p>fixations_Exp2.mat contains the variables describing each fixation of experiment 2</p> <p>dFixByImAndCon - fixation duration in ms<br> tFixByImAndCon - start time of fixation relative to image onset in ms<br> xFixByImAndCon - x position on the screen<br> yFixByImAndCon - y position on the screen<br> isModByImAndCon - fixation on unmodified (0) or isoluminant (1) patches<br> transByImAndCon - codes type of transition<br> patch n -> patch n+1<br> unmodified -> unmodified 00 (0)<br> unmodified -> isoluminant 01 (1)<br> isoluminant -> unmodified 10 (10)<br> isoluminant -> isoluminant 11 (11)</p> <p>Notes:<br> - All variables have the dimensions subject (20) x image (60) x condition (4 - unmodied, isoluminant, center-isoluminant, center-unmodified) x fixation number in trial (50).<br> - isModByImAndCon is 1 if the fixated region is isoluminant, and 0 if unmodified, nan for fixations outside the image.<br> - otherwise notation as in fixations_Exp1.mat</p> <p><br> saccades_Exp2.mat contains the variables describing each saccade of experiment 2</p> <p>xFromByImAndCon / yFromByImAndCon - saccade starting coordinate<br> xToByImAndCon / yToByImAndCon - saccade starting coordinate</p> <p>Notes:<br> - variable dimensions as in fixations_Exp2.mat<br> - coordinates refer to screen (1920x1080), not to image</p> <p> </p> <p> </p>
Supplemental figures for the Puccinia striiformis f. sp. tritici DK0911 genome publication
<p>These are supplemental figures for the Puccinia striiformis f. sp. tritici DK0911 genome publication. This dataset is associated with the publication "Distinct life histories impact dikaryotic genome evolution in the rust fungus Puccinia striiformis causing stripe rust in wheat", the Bioproject accession number PRJNA588102, and 10.5281/zenodo.3556840. </p> <p>Update 20200212:</p> <p>We now added the updated Supplemental Figures (Supplemental_figures_DK0911_revision_01.tar.gz) which are part of the first revisions of this manuscript.</p> <p>Preprint:</p> <p>https://www.biorxiv.org/content/10.1101/859728v1</p>
Data supplementing the article "Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers" - raw MiSeq data inventories
<p>These data supplement the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” Sinziana F. Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet & Agnès Bouchez submitted to “Molecular Ecology Resources” journal.</p> <p>The directory is composed of: “38_samples_fastq:files”: contains raw demultiplexed fastq files (R1. fastq and R2. fastq) for each of the 38 samples used in this study to produce OTUs and taxonomic inventories.</p> <p>“Samples id.xlsx”: contains the samples ID of the fastq files</p> <p>“Inventories.xlsx”: contains single and multi-habitat morphological inventories as well as molecular inventories resulting from the study</p>
Supplemental table 1 in manuscript "E-00068-2020 "
<p>Supplemental table 1 in manuscript "E-00068-2020 "</p>
Supplemental Figure for Circulating MiRNA 887 is Differentially Expressed in ARDS and Modulates Endothelial Function
<p>Supplemental Figure 1. A) Among subjects who developed ARDS, there was no difference in plasma miR-887-3p levels between subjects who were (n = 9) or were not (n = 10) receiving mechanical ventilation when the sample was collected. B) Similarly, among subjects who did not develop ARDS, there was no difference in plasma-887-3p levels between subjects who were (n = 13) or were not (n = 9) receiving mechanical ventilation when the sample was collected. Standard deviation shown.</p>
Supplemental information for "Creating thin magnetic layers at the surface of 2 Sb2Te3 topological insulators using a low-energy chromium ion beam"
<p>A test upload of the data repository to Zenodo</p>
Raw data related to: Coenzyme Q10 supplementation reduces peripheral oxidative stress and inflammation in interferon-β1a-treated multiple sclerosis
<p><strong>Abstract</strong></p> <p>Background: Oxidative stress is a driver of multiple sclerosis (MS) pathology. We evaluated the effect of coenzyme Q10 (CoQ10) on laboratory markers of oxidative stress and inflammation, and on MS clinical severity.</p> <p>Methods: We included 60 relapsing–remitting patients with MS treated with interferon beta1a 44<strong>μ</strong>g (IFN-<strong>β</strong>1a) with CoQ10 for 3 months, and with IFN-<strong>β</strong>1a 44<strong>μ</strong>g alone for 3 more months (in an open-label crossover design). At baseline and at the 3 and 6-month visits, we measured markers of scavenging activity, oxidative damage and inflammation in the peripheral blood, and collected data on disease severity.</p> <p>Results: After 3 months, CoQ10 supplementation was associated with improved scavenging activity (as mediated by uric acid), reduced intracellular reactive oxygen species production, reduced oxidative DNA damage, and a shift towards a more anti-inflammatory milieu in the peripheral blood [with higher interleukin (IL)-4 and IL-13, and lower eotaxin, granulocyte-macrophage colonystimulating factor (GM-CSF), hepatocyte growth factor (HGF), interferon (IFN)-<strong>γ</strong>, IL-1<strong>α</strong>, IL-2R, IL-9, IL-17F, macrophage inflammatory proteins (MIP)-1<strong>α</strong>, regulated on activation-normal T cell expressed and secreted (RANTES), tumor necrosis factor (TNF)-<strong>α</strong>, and vascular endothelial growth factor (VEGF). Also, CoQ10 supplementation was associated with lower Expanded Disability Status Scale, fatigue severity scale, Beck’s depression inventory, and the visual analogue scale for pain.</p> <p>Conclusions: CoQ10 supplementation improved scavenging activity, reduced oxidative damage, and induced a shift towards a more anti-inflammatory milieu, in the peripheral blood of relapsing–remitting MS patients treated with 44<strong>μ</strong>g IFN-<strong>β</strong>1a 44<strong>μ</strong>g. A possible clinical effect was noted but deserves to be confirmed over longer follow ups.</p> <p><strong>Progetto giovani ricercatori </strong>[GR-2016-02363725] dal titolo: "Immune Tolerance, Metabolism and Multiple Sclerosis: Novel Molecular Tools to Monitor Disease Pathogenesis and Progression"</p>
Supplemental data for "Initial land use/cover distribution substantially affects global carbon and local temperature projections in the integrated Earth System Model." Article published as Global Biogeochemical Cycles publication 2019B006383
<p>These are supporting data for Global Biogeochemical Cycles publication 2019B006383: "Initial land use/cover distribution substantially affects global carbon and local temperature projections in the integrated Earth System Model." They include data for all of the regular and supplemental figures.</p>
Supplemental materials for: Peri- and post-pubertal estrogen exposures of female mice optimize uterine responses later in life
<p>At birth, all female mice, including those that either lack estrogen receptor α (ERα-knockout) or that express mutated forms of ERα (AF2ERKI), have a hypoplastic uterus. However, uterine growth and development that normally accompanies pubertal maturation does not occur in ERα-knockout or AF2ERKI mice, indicating ERα mediated estrogen signaling is essential for this process. Mice that lack Cyp19 (aromatase, ArKO mice), an enzyme critical for estrogen (E2) synthesis, are unable to make E2, and lack pubertal uterine development. A single injection of E2 into ovariectomized adult (10 weeks old) females normally results in uterine epithelial cell proliferation, however, we observe that, although ERα is present in the ArKO uterine cells, no proliferative response is seen. We assessed the impact of exposing ArKO mice to E2 during pubertal and post-pubertal windows and observed that E2 exposed ArKO mice acquired growth responsiveness. Analysis of differential gene expression between unexposed ArKO samples and samples from animals exhibiting the ability to mount an E2-induced uterine growth response (WT or E2 exposed ArKO) revealed activation of EZH2 and HAND2 signaling and inhibition of GLI1 responses. EZH2 and HAND2 are known inhibit uterine growth, and GLI1 is involved in IHH signaling, which is a positive mediator of uterine response. Finally, we show that exposure of ArKO females to dietary phytoestrogens results in their acquisition of uterine growth competence. Altogether our findings suggest that pubertal levels of endogenous and exogenous estrogens impact biological function of uterine cells later in life via ERα-dependent mechanisms.</p>
Data supplement for "Localized states in the conserved Swift-Hohenberg equation with cubic nonlinearity [Phys. Rev. E 87, 042915 (2013)]"
<p>Data sets and user-defined files for continuation tool auto07p for most figures of the paper "Localized states in the conserved Swift-Hohenberg equation with cubic nonlinearity" [<em>Phys. Rev. E </em> <strong>87</strong>, 042915 (2013)] with abstract "The conserved Swift-Hohenberg equation with cubic nonlinearity provides the simplest microscopic description of the thermodynamic transition from a fluid state to a crystalline state. The resulting phase field crystal model describes a variety of spatially localized structures, in addition to different spatially extended periodic structures. The location of these structures in the temperature versus mean order parameter plane is determined using a combination of numerical continuation in one dimension and direct numerical simulation in two and three dimensions. Localized states are found in the region of thermodynamic coexistence between the homogeneous and structured phases, and may lie outside of the binodal for these states. The results are related to the phenomenon of slanted snaking but take the form of standard homoclinic snaking when the mean order parameter is plotted as a function of the chemical potential, and are expected to carry over to related models with a conserved order parameter."</p> <p> </p>
Supplemental to Masterthesis: Comparative Genome analysis of borontolerant and -sensitive bacterial isolates
<p>Supplemental data and result files of the Masterthesis: Comparative Genome analysis of borontolerant and -sensitive bacterial isolates</p>
Supplemental files for: Huston, D.C. & Smales, L.R. Proposal of Spinulacorpus biforme (Smales, 2014) n. gen., n. comb. and the Spinulacorpidae n. fam. to resolve paraphyly of the acanthocephalan family Rhadinorhynchidae Lühe, 1912. Systematic Parasitology.
<p>Supplementary datafiles associated with phylogenetic analyses for the paper:</p> <p>Huston, D.C. & Smales, L.R. Proposal of <em>Spinulacorpus biforme </em>(Smales, 2014) n. gen., n. comb. and the Spinulacorpidae n. fam. to resolve paraphyly of the acanthocephalan family Rhadinorhynchidae Lühe, 1912.</p> <p>Accepted for publication in the journal Systematic Parasitology, on the 20 of June 2020.</p> <p>See 'READ_ME.txt' file for further explanation of contents of this upload.</p>
Supplemental Materials for MS Thesis - Crab Chapter
<p>Supplemental files for linking to in my MS Thesis "Impacts of temperature on the molecular response of shellfish" - Crab Chapter (Chapter 2). </p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.