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FIGURE 1. Erythroxylum lancifolium Peyr. A. Flowering branch. B. Leaf blade, detailing venation. C. Branch detail, showing stipules. D. Stipule, abaxial view. E in Lectotypification and notes on the distribution and conservation status of Erythroxylum lancifolium (Erythroxylaceae), species endemic to the Brazilian Atlantic Forest
FIGURE 1. Erythroxylum lancifolium Peyr. A. Flowering branch. B. Leaf blade, detailing venation. C. Branch detail, showing stipules. D. Stipule, abaxial view. E. Flower bud, showing bracteoles at the base F. Brevistylous flower, with petals removed. G. Petal, showing appendages. H. Ovary. I. Drupe. J. Drupe in cross-section. Vouchers: A–H—A.P. Fontana et al. 1191 (MBML 24468); I–J—L. Kollmann et al. 9567 (MBML 29170). Drawn by Lucas Marinho.
Datasets - Unveiling Host-Parasite Relationships through Conserved MITEs in Prokaryote and Viral Genomes
<p><em><span>Title:</span></em></p> <p><strong><span>Unveiling Host-Parasite Relationships through Conserved MITEs in Prokaryote and Viral Genomes<span> </span></span></strong></p> <p><em><span> </span></em></p> <p><em><span>Authors:</span></em></p> <p><span>Francisco Nadal-Molero<sup>(1)</sup>, Riccardo Roselli<sup>(1)</sup>, Silvia Garcia-Juan<sup>(1)</sup>, Alicia Campos-Lopez<sup>(1)</sup>, Ana-Belen Martin-Cuadrado<sup>(1*)</sup></span></p> <p> </p> <p><strong><span>SUPPLEMENTARY FILES</span></strong></p> <p><strong><span> </span></strong></p> <p><strong><span>Supplementary File S1.</span></strong><span> Sequences of cMITEs detected in Bacteria genomes (<em>fasta</em> format). The hosting microbial species and inferred NCBI-taxonomy are indicated in the name of each sequence. The structure of the MITE name is: “Accession|Genome|start|end|TSD|TIRlength|MITETracker_group|Lineage”.</span></p> <p><strong><span>Supplementary File S2.</span></strong><span> Sequences of cMITEs detected in the Archaea genomes (<em>fasta</em> format). The hosting microbial species and inferred NCBI-taxonomy are indicated in the name of each sequence. The structure of the MITE name is: “Accession|Genome|start|end|TSD|TIRlength|MITETracker_group|Lineage”.</span></p> <p><strong><span>Supplementary File S3.</span></strong><span> Sequences of vMITEs detected in the virus sequences from the NCBI and IMG/VR v.4.1 database (<em>fasta</em> format). Virus, microbial host (if known) and inferred NCBI-taxonomy is stated in the name of each sequence. The structure of the MITE name is: </span></p> <p><span>“Accession|Genome|start|end|TSD|TIRlength|MITETracker_group|Virus|Name|Host”.</span></p> <p><strong><span>Supplementary File S4.</span></strong><span> Sequences of <span>si-vMITEs</span> detected in the virus sequences from the NCBI and IMG/VR v.4.1 database (<em>fasta</em> format). Virus, microbial host (if known) and inferred NCBI-taxonomy are stated in the name of each sequence. The structure of the MITE name is: “Accession|Genome|start|end|Ident.Method.by.DB|Host”.</span></p> <p><strong><span>Supplementary Files S5. </span></strong><span>Cytoscape networks. (A) Figure 1A, (B) Figure 1B.</span></p> <p><strong><span>Supplementary File S6.</span></strong><span> Sequences of cMITEs obtained from <span>5837</span> genomes of Neisseriales. The structure of the MITE name is: </span></p> <p><span>“Accession|NucleotideID|start|end|TSD|TIRlength|MITETracker_group|Genome|Lineage”.</span></p> <p><strong><span>Supplementary File S7.</span></strong><span> Sequences of si-vMITEs obtained from <span>5837</span> genomes of Neisseriales. The structure of the MITE name is: “Accession|Genome|start|end|Host”.</span></p> <p><strong><span>Supplementary File S8.</span></strong><span> Sequences of cMITEs obtained from 46051 genomes of Bacteroidota. The structure of the MITE name is:</span></p> <p><span>“Accession|NucleotideID|start|end|TSD|TIRlength|MITETracker_group|Genome|Lineage”.</span></p> <p><strong><span>Supplementary File S9.</span></strong><span> Sequences of si-vMITEs obtained from 46051 genomes of Bacteroidota. The structure of the MITE name is: “Accession|Genome|start|end|Host”.</span></p>
FIGURE 1. Discospermum philippinensis. A. Flowering branch. B. Inflorescences. C. Flower. D. Infructiscences. E. Fruit longitudinal section. F. Fruit cross section. A–B & D–F in A new species of Discospermum (Coffeeae, Rubiaceae) from Luzon, Philippines including its conservation status
FIGURE 1. Discospermum philippinensis. A. Flowering branch. B. Inflorescences. C. Flower. D. Infructiscences. E. Fruit longitudinal section. F. Fruit cross section. A–B & D–F drawn from the holotype by N. Diego, C drawn by A. Arriola.
FIGURE 6. M in A revision of Mezoneuron (Leguminosae: Caesalpinioideae) in New Caledonia, with perspectives on vegetation, geology, and conservation
FIGURE 6. M. montrouzieri: 6a, c. leaves (Clark, R.P. 150, 160); 6b. young inflorescence (Clark, R.P. 160); 6d, e. inflorescences (Clark, R.P. 137, 150); 6f. fruit (Clark, R.P. 150)
FIGURE 11 in A revision of Mezoneuron (Leguminosae: Caesalpinioideae) in New Caledonia, with perspectives on vegetation, geology, and conservation
FIGURE 11. Phylogeny of the Mezoneuron containing clade of the informal Caesalpinia Group. Strict consensus of 100,000 equally parsimonious trees based on rps16 plastid sequences. Bootstrap support is shown in bold above branches, and posterior probability values are shown italicised, below the branch (Gagnon et al. 2013). The branches of the tree shown in yellow indicate species found in Australia, and the branch in red is a New Caledonian endemic species. Fruits of species within the New Caledonian species containing clade are shown (except C. nitens, the fruit of which are unknown), and contrasted with that of the winged fruit of Pterolobium within the sister clade. Fruit illustrations by R. Clark
FIGURE 2 in A revision of Mezoneuron (Leguminosae: Caesalpinioideae) in New Caledonia, with perspectives on vegetation, geology, and conservation
FIGURE 2. Illustration of M. montrouzieri, with leaf detail of all species. (a) M. montrouzieri habit, leaf and inflorescence, with detail showing idioblasts on leaf undersurface; flower, side view; flower opened out; petals, inner surface (median, 2 upper laterals, 2 lower laterals); ovary and style; fruit with detail of hairs—drawn from Clark, R.P. 160; (a)(i) M. montrouzieri glabrous ovary; (a)(ii) leaf pinna—drawn from Clark, R.P. 150 (specimen formerly identified as M. deverdiana); (b) pinna of M. baudouinii—drawn from Clark, R.P. 141; (c), (c)(i) pinnae of M. schlechteri (showing variation)–drawn from Clark, R.P., 132, 134; (d) pinna of M. rubiginosum—drawn from McPherson, G. 2089; (e) pinna of M. ouenensis—drawn from Balansa, B. 312. Illustration by Margaret Tebbs.
FIGURE 5 in A taxonomic revision of Zamia montana and Zamia oligodonta, with notes on their conservation status
FIGURE 5. Zamia oligodonta in habitat in Risaralda, Colombia. A–C. New leaves at different sequential stages of development. D–G. Ovulate strobili at sequential stages of development. H–I. Juvenile pollen strobili approximately 1 month away from pollen dehiscience.
FIGURE 2 in A taxonomic revision of Zamia montana and Zamia oligodonta, with notes on their conservation status
FIGURE 2. Zamia montana in habitat in Antioquia, Colombia. A–B. Leaves on juvenile plants. C. Base of petiole showing sparse prickles. D. Leaf of adult-sized plant. E. Adult plant with decumbent stem 1.1 meters long. F. Middle leaflet from adult plant.
FIGURE 4 in A taxonomic revision of Zamia montana and Zamia oligodonta, with notes on their conservation status
FIGURE 4. Zamia oligodonta in habitat in Risaralda, Colombia. A. Eophyll leaflets. B. Leaf of juvenile plant. C. Petiole base showing sparse prickles. D. Slightly arborescent ovulate plant with 30 cm. ruler for scale. E. Adult sized plant with completely subterranean stem and two leaves, each approximately 2.7 m long. F. Middle leaflet from adult plant.
FIGURE 1 in A taxonomic revision of Zamia montana and Zamia oligodonta, with notes on their conservation status
FIGURE 1. Illustration of Z. montana leaflet drawn by August Eichler in 1881 (digitally enhanced for clarity)
FIGURE 3 in A taxonomic revision of Zamia montana and Zamia oligodonta, with notes on their conservation status
FIGURE 3. Zamia montana in habitat in Antioquia, Colombia. A. Newly emerging leaf. B. Herbivory by Eumaeus sp. Larvae. C. Arborescent trunk with 30 cm ruler for scale. D. Juvenile seed strobilus approximately 33 x 16 cm. Photograph by Marco Tulio Betancur. E. Juvenile pollen strobili, longest one approximately 12 cm long. Photograph by Julio Betancur.
FIGURE 3 in The rediscovery of Stachys virgata (Lamiaceae), a rare endemic of Peloponnisos, Greece: taxonomy, distribution, karyology and conservation
FIGURE 3. Total known distribution of Stachys virgata. Red circles indicate historical sites not confirmed the last 171 years. Yellow circles refer to the new populations discovered between 2005 and 2014.
FIGURE 4. A in The rediscovery of Stachys virgata (Lamiaceae), a rare endemic of Peloponnisos, Greece: taxonomy, distribution, karyology and conservation
FIGURE 4. A metaphase plate of Stachys virgata with the diploid chromosome number of 2n = 34 on material near Krioneri settlement (population no. 16—see Appendix for details).
FIGURE 1 in The rediscovery of Stachys virgata (Lamiaceae), a rare endemic of Peloponnisos, Greece: taxonomy, distribution, karyology and conservation
FIGURE 1. Drawings of Stachys virgata (from Kalpoutzakis 1786 and Constantinidis & Kalpoutzakis 11379). A. Flowering shoot. B. Basal leaf. C. A verticillaster from middle part of inflorescence with two flowers. D. Inner part of an opened calyx. Scale bars: A = 10 cm, B = 2.5 cm, C = 10 mm, D = 5 mm. Illustrations by Z. Tziakou.
FIGURE 2 in The rediscovery of Stachys virgata (Lamiaceae), a rare endemic of Peloponnisos, Greece: taxonomy, distribution, karyology and conservation
FIGURE 2. Stachys virgata in its natural habitat. A. A post-flowering plant from population no. 2, between Mitropolis and Kapsala (29.07.2013). B. A pre-flowering plant from population no. 9, near Poulithra village (28.04.2006). C. Seedlings in spring 2006, after a local fire in population no. 12, at Agrioachladia (28.04.2006). D. Part of an inflorescence in population no. 12, at Agrioachladia (22.06.2008). E. Ripe seeds. For population details see Appendix. All photographs by E. Kalpoutzakis.
FIGURE 1 in Extinction risks and conservation status of Corybas (Orchidaceae; Orchidoideae; Diurideae) in Peninsular Malaysia
FIGURE 1. Eight species of Corybas recovered during this study. A. Corybas calopeplos; B. Corybas carinatus; C. Corybas comptus; D. Corybas geminigibbus; E. Corybas holttumii; F. Corybas ridleyanus; G. Corybas selangorensis; H. Corybas villosus and I. moss-carpeted forest floor favourable for their growth.
FIGURE 2 in Extinction risks and conservation status of Corybas (Orchidaceae; Orchidoideae; Diurideae) in Peninsular Malaysia
FIGURE 2. Corybas habitat, Genting Highlands (above) and Cameron Highlands (below) showing the degraded montane forest in Peninsular Malaysia over a period of time.
FIGURE 2. Rhipsalis agudoensis. A in Rediscovery, considerations about type locality and conservation of Rhipsalis agudoensis (Cactaceae) from the Brazilian Atlantic Forest
FIGURE 2. Rhipsalis agudoensis. A) Stem with floral bud and flowers; B) Flowers in details (photos by D.R. Gonzaga).
FIGURE 5 in Evaluating the occurrence and conservation statuses of Sri Lankan Orchids (Orchidaceae): Observations on newly recorded species and undocumented regions
FIGURE 5. (A). Habenaria pterocarpa (B). Ipsea speciosa (C). Liparis elliptica (D). Liparis brachyglottis (E). Podochilus warnagalensis (F). Zeuxine reginasilvae.
FIGURE 4 in Evaluating the occurrence and conservation statuses of Sri Lankan Orchids (Orchidaceae): Observations on newly recorded species and undocumented regions
FIGURE 4. (A). Acanthephippium bicolor (B). Aerangis hologlottis (C). Anoectochilus regalis (D). Arundina minor (E). Didymoplexis pallens (F). Habenaria dolichostachya.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.