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13,017 results for “Positionning”
Context-dependent evolution of high trophic position drives functional disparity in subterranean crustaceans: data and R code
<p>The dataset contains morphological data, phylogenetic tree, and R code used in the analyses presented in the paper titled "Context-dependent evolution of high trophic position drives functional disparity in subterranean crustaceans". </p> <p>Niphargus_morpho_data.xlsx: morphological data for import in R<br> Niphargus_tree.nex: consensus phylogenetic tree for import in R<br> Rcode.Rmd: the R script in R markdown format to reproduce the analyses<br> Rcode.html: the R script in html format <br> Reproducibility_report.doc: Functional diversity protocol checklist created with stepFD (https://facuxpalacio.shinyapps.io/stepFD/)</p>
Fig. 9 in Eventually tested: Phylogenetic position of "Testechiniscus" meridionalis (Murray, 1906) (Heterotardigrada) revealed
Fig. 9. Cephalic body portion of Echiniscus becki (PCM, paratype, female): A – dorsal view, B – ventral view (arrowheads indicate black crystalline eyes; large subcephalic plates visible as dark grey, broad belts bent in a boomerang-like shape). Scale bars = 10 μm.
Fig. 8 in Eventually tested: Phylogenetic position of "Testechiniscus" meridionalis (Murray, 1906) (Heterotardigrada) revealed
Fig. 8. Distribution of two emblematic Antarctic echiniscids: purple stars – Echiniscus meridionalis stat. rev. (South Orkney Islands, South Shetland Islands, Argentine Islands), yellow star – "Testechiniscus" macronyx (South Georgia). Map downloaded from https://www.freeworldmaps.net.
Fig. 6 in Eventually tested: Phylogenetic position of "Testechiniscus" meridionalis (Murray, 1906) (Heterotardigrada) revealed
Fig. 6. Claws of Echiniscus meridionalis stat. rev. (adults): A – claws I with spine I (PCM), B – claws IV, dentate collar and papilla IV (PCM), C – claws I (SEM), D – claws IV (SEM). Scale bars in μm.
Fig. 5 in Eventually tested: Phylogenetic position of "Testechiniscus" meridionalis (Murray, 1906) (Heterotardigrada) revealed
Fig. 5. Ventral plate sculpturing of Echiniscus meridionalis stat. rev. (PCM, adults): A – female, B – male. Roman numerals indicate subsequent plate rows. Scale bars = 20 μm.
Fig. 4 in Eventually tested: Phylogenetic position of "Testechiniscus" meridionalis (Murray, 1906) (Heterotardigrada) revealed
Fig. 4. Habitus of Echiniscus meridionalis stat. rev. (SEM, adults and a juvenile in non-dorsal view): A – female in lateral view, B – juvenile in ventral view (Roman numerals indicate subsequent plate rows), C, D – males in lateral view. Scale bars = 50 μm.
Fig. 1 in Eventually tested: Phylogenetic position of "Testechiniscus" meridionalis (Murray, 1906) (Heterotardigrada) revealed
Fig. 1. Phylogenetic position of Echiniscus meridionalis stat. rev. in the Bayesian and Maximum Likelihood tree (identical topologies, the scale refers to the Bayesian tree and represents substitutions per position; posterior probability values are provided as first at the nodes, followed by bootstrap values after slash; * – maximal support, # – no support; see Supplementary Material 3 for a detailed tree with all branches shown). Diploechiniscus oihonnae and Testechiniscus spitsbergensis constitute an outgroup.
Table 10 for the Study: "Correlation Study: Triggering and Magnitude of Earthquakes in Italy (≥M4.3) in Relation to the Positions and Gravitational Forces of the Sun, Moon, and Planets Relative to Earth."
<p><strong>Details of the 200 analyzed earthquakes encompassing values and indices for σFR Parameters A, B, and the percentile of Alert Time across the three Analysis Lines, for Section 3.2.6.</strong></p><p>It contains the 6 Excel calculation files: 2 excel sheets for each of the 3 lines of analysis.</p><p>In case of display problems or missing data: </p><p>the file <a href="https://zenodo.org/api/files/0b63ead2-6802-4089-849b-949758da13fd/Eqs%201-112%20-%20All%20Planets%20FR%20Graphs.xlsx">Eqs 1-112 - All Planets FR Graphs.xlsx</a> is available also on the Drive: <a href="https://docs.google.com/spreadsheets/d/1hxAsh6BZZH70z7C2iBVI4LqNsbl7gCcGmRJIX9CVLUA/edit?usp=sharing">https://docs.google.com/spreadsheets/d/1hxAsh6BZZH70z7C2iBVI4LqNsbl7gCcGmRJIX9CVLUA/edit?usp=sharing</a></p><p>the file <a href="https://zenodo.org/api/files/0b63ead2-6802-4089-849b-949758da13fd/Eqs%20113-200%20-%20All%20Planets%20FR%20Graphs.xlsx">Eqs 113-200 - All Planets FR Graphs.xlsx</a> is available also on the Drive: <a href="https://docs.google.com/spreadsheets/d/1bGcgwL5R_GPO3aQO3tdscGFjPrFdIJ-s16yQE9_eMXY/edit?usp=sharing">https://docs.google.com/spreadsheets/d/1bGcgwL5R_GPO3aQO3tdscGFjPrFdIJ-s16yQE9_eMXY/edit?usp=sharing</a> </p><p>the file <a href="https://zenodo.org/api/files/0b63ead2-6802-4089-849b-949758da13fd/Eqs%201-112%20-%20Moon%20and%20Sun%20FR%20Graphs.xlsx">Eqs 1-112 - Moon and Sun FR Graphs.xlsx</a> is available also on the Drive: <a href="https://docs.google.com/spreadsheets/d/1CLGRDgp-eyGMUZjvNjIfuxI-7fzUsY0NYs0qyAs1XRE/edit?usp=sharing">https://docs.google.com/spreadsheets/d/1CLGRDgp-eyGMUZjvNjIfuxI-7fzUsY0NYs0qyAs1XRE/edit?usp=sharing</a></p><p>the file <a href="https://zenodo.org/api/files/0b63ead2-6802-4089-849b-949758da13fd/Eqs%20113-200%20-%20Moon%20and%20Sun%20FR%20Graphs.xlsx">Eqs 113-200 - Moon and Sun FR Graphs.xlsx</a> is available also on the Drive: <a href="https://docs.google.com/spreadsheets/d/15CYvjS-4-FxKFLcYy4jIKKiFuiWYxSM89zzOliodyFg/edit?usp=sharing">https://docs.google.com/spreadsheets/d/15CYvjS-4-FxKFLcYy4jIKKiFuiWYxSM89zzOliodyFg/edit?usp=sharing</a></p><p>the file <a href="https://zenodo.org/api/files/0b63ead2-6802-4089-849b-949758da13fd/Eqs%201-112%20-%20without%20Moon%20and%20Sun%20FR%20Graphs.xlsx">Eqs 1-112 - without Moon and Sun FR Graphs.xlsx</a> is available also on the Drive: <a href="https://docs.google.com/spreadsheets/d/1zzwugZ4ZZzy6vnQP_SBrjjYaL5fjul29CBZS2Qheq_E/edit?usp=sharing">https://docs.google.com/spreadsheets/d/1zzwugZ4ZZzy6vnQP_SBrjjYaL5fjul29CBZS2Qheq_E/edit?usp=sharing</a> </p><p>the file <a href="https://zenodo.org/api/files/0b63ead2-6802-4089-849b-949758da13fd/Eqs%20113-200%20-%20without%20Moon%20and%20Sun%20FR%20Graphs.xlsx">Eqs 113-200 - without Moon and Sun FR Graphs.xlsx</a> is available also on the Drive: <a href="https://docs.google.com/spreadsheets/d/12phjR1r1pQXqzdclBCbV76nXpne4B9VqksDj4RqgEKw/edit?usp=sharing">https://docs.google.com/spreadsheets/d/12phjR1r1pQXqzdclBCbV76nXpne4B9VqksDj4RqgEKw/edit?usp=sharing</a></p>
Fig. 3 in Eventually tested: Phylogenetic position of "Testechiniscus" meridionalis (Murray, 1906) (Heterotardigrada) revealed
Fig. 3. Habitus of Echiniscus meridionalis stat. rev. (SEM, adults in dorsal view): A – female, B – male. Scale bars = 50 μm.
Table 4 for the Study: "Correlation Study: Triggering and Magnitude of Earthquakes in Italy (≥M4.3) in Relation to the Positions and Gravitational Forces of the Sun, Moon, and Planets Relative to Earth."
<p><strong>Table 5, APPENDIX </strong>for the Study: "<i>Correlation Study: Triggering and Magnitude of Earthquakes in Italy (≥M4.3) in Relation to the Positions and Gravitational Forces of the Sun, Moon, and Planets Relative to Earth</i>," for Section 2.10.</p><p>Contains the list of M>4.3 earthquakes that occurred in Italy from 1600 to 2022 AD and the list of earthquakes analyzed.</p>
Supplementary videos to the article "The first arctic strain of Rhizochromulina: morphology, ultrastructure, and position in the evolutionary tree of the order Rhizochromulinales (Ochrophyta, Dictyochophyceae)"
<p>Supplementary videos to the article "The first arctic strain of Rhizochromulina: morphology, ultrastructure, and position in the evolutionary tree of the order Rhizochromulinales (Ochrophyta, Dictyochophyceae)"</p>
Figure 1 in Are cleaning interactions offered by large cleaners positive?
Figure 1. Cleaning interaction between adult Guinean angelfish Holacanthus africanus (acting) and blackbar soldierfish Myripristis jacobus in the remote Cabo Verde Archipelago. This cleaning interaction was observed inside of a small cave at 20 m depth.
KG_Terminus_Positions_2015_to_2022
<p>Shapefiles of Kangerdlugssuaq glacier terminus positions digitised using GEEDiT between 2015-2022</p>
Figs. 1–8 in A New Genus and Species of Neotropical Taphurini Distant, 1905 (Hemiptera: Cicadoidea: Cicadidae: Cicadettinae) from Brazil with a Note on the Taxonomic Position of Prosotettix Jacobi, 1907
Figs. 1–8. Brevialavenosa aurepilosa Sanborn, new genus, new species. 1, Holotype male habitus. Scale bar = 2 cm. 2, Holotype male dorsum. Scale bar = 2 mm. 3, Holotype male timbal. Scale bar = 1 mm. 4, Paratype male operculum. Scale bar = 2 mm. 5, Paratype male lateral view of genitalia. Scale bar = 1 mm. 6, Paratype male posterior view of genitalia. Scale bar = 1 mm. 7, Paratype male aedeagus. Scale bar = 1 mm. 8, Paratype male claspers. Scale bar = 1 mm.
3D particle-in-cell simulations of negative and positive streamers in C4F7N-CO2 mixtures
<p>The dataset contains the data for obtaining the results presented in the article "3D particle-in-cell simulations of negative and positive streamers in C4F7N-CO2 mixtures". It includes (1) the PIC/MCC source code; (2) transport data files as input; (3) configuration files for simulation execution; and (4) output log files (which contain information about the physics and numerical properties of the simulations).</p>
Python codes for "Regional Greening as a 'Positive' Tipping Phenomenon".
<p># Regional Greening as a 'Positive' Tipping Phenomenon</p> <p>## Contents</p> <p>- [Overview](#overview)<br> - [Repo Contents](#repo-contents)<br> - [System Requirements](#system-requirements)<br> - [Installation Guide](#installation-guide)<br> - [Demo](#demo)</p> <p># Overview</p> <p>The Python codes for our paper "Regional Greening as a 'Positive' Tipping Phenomenon".</p> <p># Repo Contents<br> - [Code](./Code): main code for simulation and visualization<br> - [Tibet](Code/Tibet) : site percolation simulation and related analysis for Qinghai-Tibetan Plateau (QTP) area.<br> - [EVI_Percolation](Code/Tibet/EVI_Percolation):<br> fragment-size distribution exponent and<br> fractal dimensions for QTP<br> - [EVI_Percolation_Shuffle](Code/Tibet/EVI_Percolation_Shuffle): null models for QTP<br> - [EVI_Percolation_Snapshots](Code/Tibet/EVI_Percolation_Snapshots): correlation length and susceptibility for QTP<br> - [EVI_Percolation_Protection](Code/Tibet/EVI_Percolation_Protection): Optimal enhancing resilience model for QTP<br> - [EVI_Enhanced](Code/Tibet/EVI_Enhanced): Enhanced EVI Coverage for QTP<br> - [Sahel](Code/Sahel) site percolation simulation and related analysis for Sahel area.<br> - [EVI_Percolation](Code/Sahel/EVI_Percolation):<br> fragment-size distribution exponent and<br> fractal dimensions for Sahel<br> - [EVI_Percolation_Shuffle](Code/Sahel/EVI_Percolation_Shuffle): null models for Sahel<br> - [EVI_Percolation_Snapshots](Code/Sahel/EVI_Percolation_Snapshots): correlation length and susceptibility for Sahel<br> - [EVI_Percolation_Protection](Code/Sahel/EVI_Percolation_Protection): Optimal enhancing resilience model for Sahel<br> - [EVI_Enhanced](Code/Sahel/EVI_Enhanced): Enhanced EVI Coverage for Sahel<br> - [Plot_Figs](Code/Plot_Figs) : Draw the pictures<br> - [GEE_Data_Download_Script](./GEE_Data_Download_Script): scripts to download data from Google Earth Engine (GEE)<br> - [Shapefile](./Shapefile): shapefiles used to select the Sahel and Tibet regions in the study.<br> - [SRCJl](./SRCJl) and [SRCPy](./SRCPy) : custom function libraries.</p> <p><br> # System Requirements</p> <p><br> ## Software Requirements</p> <p>### OS Requirements</p> <p>The package development version is tested on *Linux* operating systems. The developmental version of the package has been tested on the following systems:</p> <p>Linux: Ubuntu 22.04 </p> <p># Installation Guide</p> <p>1. Users should build Python (3.9) and Julia (1.9) environment first.<br> For Python, visit [https://www.anaconda.com/download](https://www.anaconda.com/download) to download and install the Anaconda distribution.<br> For Julia, go to [https://julialang.org/downloads/](https://julialang.org/downloads/) and download the Julia installer for your platform. Follow the installation instructions provided on these websites.</p> <p>2. Compile the libraries.<br> ```<br> cd SRCJl\Flib\sitep<br> bash compile_site_percolation.sh<br> ```</p> <p># Prepare Data<br> 1. Download data from GEE by using the [GEE_Data_Download_Script](./GEE_Data_Download_Script) and [shapefile](./Shapefile).<br> 2. Place the data in the corresponding path:<br> - MODIS EVI V6 (QTP): [Code/Tibet/Data/Tibet_EVI_V6/Summer](Code/Tibet/Data/Tibet_EVI_V6/Summer/)<br> - MODIS EVI V6 (Sahel) : [Code/Sahel/Data/Sahel_EVI_V6/Summer](Code/Sahel/Data/Sahel_EVI_V6/Summer/)<br> - TerraClimate Summer precipitation (QTP) : [Code/Tibet/Data/Tibet_TerraClimate_pr_Summer](Code/Tibet/Data/Tibet_TerraClimate_pr_Summer)<br> - TerraClimate Summer precipitation (Sahel) : [Code/Tibet/Data/Sahel_TerraClimate_pr_Summer](Code/Sahel/Data/Tibet_TerraClimate_pr_Summer)</p> <p># Demo<br> ```<br> cd Code/Sahel/EVI_Percolation<br> bash run_all.sh<br> ```<br> ```<br> cd Code/Tibet/EVI_Percolation_Shuffle<br> bash run_all.sh<br> ```<br> ```<br> cd Code/Tibet/EVI_Percolation_Snapshots<br> bash run_all.sh<br> ```<br> ```<br> cd Code/Tibet/EVI_Percolation_Protection<br> bash run_all.sh<br> ```<br> ```<br> cd ode/Tibet/EVI_Enhanced<br> bash run_all.sh<br> ```</p>
Figure 8 in Taxonomy and molecular phylogenetic position of new species and new records of Coelosphaeridae (Demospongiae: Poecilosclerida) from the Mexican Pacific
Figure 8. Lissodendoryx (Waldoschmittia) hawaiiana. A, B, External morphology of alive and preserved specimens, respectively; C, tangential view of ectosomal skeletal structure; D, cross-section view of choanosomal skeletal structure.
Figure 4 in Taxonomy and molecular phylogenetic position of new species and new records of Coelosphaeridae (Demospongiae: Poecilosclerida) from the Mexican Pacific
Figure 4. Lissodendoryx (Anomodoryx) incrustans sp. nov. A, B, External morphology of preserved holotype; C, drawings of a cross-section of the skeletal structure.
Figure 3 in Taxonomy and molecular phylogenetic position of new species and new records of Coelosphaeridae (Demospongiae: Poecilosclerida) from the Mexican Pacific
Figure 3. SEM images of spicules of Celtodoryx chichiltik sp. nov. A, Strongyle; B, tylote; C, detail of head and tip of the of strongyles; D, arcuate tridentate isochelae; E, F, detailed morphology of the oxychaetes.
Figure 10 in Taxonomy and molecular phylogenetic position of new species and new records of Coelosphaeridae (Demospongiae: Poecilosclerida) from the Mexican Pacific
Figure 10. Phylogenetic reconstruction of 28S rRNA nuclear-ribosomal region (C1, C2–D2). The tree presented was obtained by BI and includes ML values. The number at each node represents the PP in % from BI, followed by the BP from ML; a (–) indicates that a particular analysis supported the node at less than 50%. The GenBank accession numbers are given asser each taxon name.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.