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Alzheimer's disease-induced phagocytic microglia express specific profile of coding and non-coding RNAs
<p>This repository contains the data and the code used in Flavia's project.</p> <p>A folder can contain the starting raw data in "data", the R scripts in order of execution (op1, op2 ..) and the "output" folder that contains the final processed data of each operation.</p> <ul> <li>"BV2_analysis" contains the processing and analysis of the bulk RNA sequencing data with the different miRNAs in study</li> <li>"BV2_fastq_nfcore" contains the results of processing the fasta sequences with nfcore rnaseq workflow</li> <li>"Proinf_analysis" contains the analysis of the external bulk RNA sequencing data with the different studies of proinflammatory microglial cells</li> <li>"Spatial_data_analysis" contains the raw data of the spatial sequencing, the assempbly of the spatial expression profiles starting from the DAPI images and the transcripts coordinates, the analysis performed on the data</li> <li>"Spatial_U_scRNA_analysis" contains the code that integrates the spatial sequencing with the scRNA sequencing, plus the code of the analysis</li> </ul>
Data for: Aggregation in an heterospecific population of blowfly larvae: social behaviour is impacted by species-specific thermal requirements and settlement order
<p><span>Larvae of several blow fly species grow on carcasses and actively aggregate together. They face harsh developmental conditions resulting in a strong pressure to reduce development time: this is achieved either through thermoregulation or aggregation. We investigate how these two developmental strategies are modulated within heterospecific groups. In the first experiment, larvae of two species with different thermal requirements were deposited simultaneously on a thermal gradient. This resulted in the formation of two monospecific groups, each located at the species-specific thermal preferendum. However, when <em>Calliphora</em> <em>vomitoria</em> (Linnaeus) larvae were placed first, the later coming <em>Lucilia</em> <em>sericata</em> (Meigen) larvae attracted the whole group to its own thermal preferendum. In the reverse experiment, a half of the replicates resulted in single dense heterospecific groups observed at temperatures ranging from <em>C. vicina</em> to <em>L. sericata</em> preferendum. The other half of the replicates resulted in loose groups spread out on the thermal gradient. These results highlight the emergence of collective decisions ranging from thermal optimization to heterospecific aggregation at suboptimal temperatures. They demonstrate that species settlement order strongly affects self-organization processes and mixed-species group formation. We conclude that thermal optimization and heterospecific niche construction are two developmental strategies of carrion fly larvae.</span></p>
Conserved and cell type-specific transcriptional responses to IFN-γ in the ventral midbrain
<p>FISH image quantification and pSTAT1-Y701 analysis of fig.4 </p>
Differences in SARS-CoV-2 specific humoral and cellular immune responses after contralateral and ipsilateral COVID-19 vaccination
<p>In an observational study, 303 previously naive individuals were recruited, who received the second dose of the COVID-19 vaccine BNT162b2 on either the ipsilateral (n=147) or the contralateral side (n=156). Spike-specific IgG, IgG-avidity, and neutralizing antibodies were quantified using ELISA and a surrogate assay 2 weeks after dose 2. A subgroup of 143 individuals (64 ipsilateral, 79 contralateral) was analysed for spike-specific CD4 and CD8 T-cells using flow-cytometry.</p>
MSMS of specific protein biomarkers of pathogenic bacteria
<p>MSMS of specific protein biomarkers of pathogenic bacteria via MALDI TOF-TOF</p>
Fig. 2 in Identification and localization of morphological feature-specific metabolites in Reynoutria multiflora roots
Fig. 2. (continued).
Fig. 4 in Identification and localization of morphological feature-specific metabolites in Reynoutria multiflora roots
Fig. 4. Structures of specialised metabolites detected specifically on cork, cortex, PAB and XAB.
Fig. 4. Key correlations for compounds 6–14 in Microbial transformation of capsaicin by several human intestinal fungi and their inhibitory effects against lysine-specific demethylase 1
Fig. 4. Key correlations for compounds 6–14 observed in HMBC and 1H–1H COSY spectra.
Fig. 2 in Microbial transformation of capsaicin by several human intestinal fungi and their inhibitory effects against lysine-specific demethylase 1
Fig. 2. Key correlations for metabolites (1, 3–5) observed in HMBC and 1H–1H COSY spectra.
Collection of Object-Centric Event Logs (OCEL 2.0 format; SQLite specification)
<p>We provide some realistic examples of logs in the OCEL 2.0 standard.</p>
Collection of Object-Centric Event Logs (OCEL 2.0 format; XML specification)
<p>We provide some realistic examples of logs in the OCEL 2.0 standard.</p>
Cultivar-Specific Responses of Tomato Essential Oils to Tomato Red Spider Mite (Tetranychus evansi): Implications for Pest Management
<p>The dataset contains comprehensive experimental data and analytical results from a study conducted to explore the interaction between tomato essential oils and the tomato red spider mite (<em>T. evansi</em>). The study involved essential oils extracted from seven distinct tomato accessions (<em>Solanum lycopersicum L.</em>), namely accessions 1 (money maker), 13 (marglobe), 51 (PI 134417), 162 (JKUAT 22/202183), 182 (JKUAT 19), 428 (LA 2185), and 460 (LO 3279). The dataset encompasses the following components:</p> <ol> <li><strong>Essential Oil Extraction Data:</strong> Details of the steam distillation process used to extract essential oils from each tomato accession, including extraction time and yield.</li> <li><strong>Spider Mite Response Data:</strong> Results from Y-tube olfactometer and glass slide bioassays measuring the response of <em>T. evansi</em> to essential oils from different accessions. Responses include attraction, repulsion, or neutrality.</li> <li><strong>Gas Chromatography/Mass Spectrometry (GC/MS) Analysis:</strong> Analytical data presenting the chemical composition of volatile compounds released by the essential oils. Quantitative and qualitative variations among accessions are documented, highlighting key compounds influencing mite behavior.</li> <li><strong>Statistical Analysis:</strong> Statistical tests conducted to assess significant differences in mite responses to various essential oil concentrations and accessions.</li> <li><strong>Visualizations:</strong> Graphs, charts, and figures representing mite behavior responses, essential oil composition variations, and concentration-related effects.</li> </ol> <p>The dataset contributes valuable information to the field of natural pest management and plant-arthropod interactions. Researchers, agronomists, and entomologists interested in understanding the potential of essential oils for pest control and the importance of phytochemical diversity in pest behavior modulation will find this dataset beneficial for further analysis and validation.</p> <p>By accessing this dataset, researchers can delve into the intricate relationship between tomato essential oils and the behavior of the tomato red spider mite, paving the way for innovative approaches to mitigate pest damage and enhance crop productivity.</p> <p>License: The dataset is made available under the Creative Commons Attribution 4.0 International License.The dataset contains comprehensive experimental data and analytical results from a study conducted to explore the interaction between tomato essential oils and the tomato red spider mite (<em>T. evansi</em>). The study involved essential oils extracted from seven distinct tomato accessions (<em>Solanum lycopersicum L.</em>), namely accessions 1 (money maker), 13 (marglobe), 51 (PI 134417), 162 (JKUAT 22/202183), 182 (JKUAT 19), 428 (LA 2185), and 460 (LO 3279). The dataset encompasses the following components:</p> <ol> <li><strong>Essential Oil Extraction Data:</strong> Details of the steam distillation process used to extract essential oils from each tomato accession, including extraction time and yield.</li> <li><strong>Spider Mite Response Data:</strong> Results from Y-tube olfactometer and glass slide bioassays measuring the response of <em>T. evansi</em> to essential oils from different accessions. Responses include attraction, repulsion, or neutrality.</li> <li><strong>Gas Chromatography/Mass Spectrometry (GC/MS) Analysis:</strong> Analytical data presenting the chemical composition of volatile compounds released by the essential oils. Quantitative and qualitative variations among accessions are documented, highlighting key compounds influencing mite behavior.</li> <li><strong>Statistical Analysis:</strong> Statistical tests conducted to assess significant differences in mite responses to various essential oil concentrations and accessions.</li> <li><strong>Visualizations:</strong> Graphs, charts, and figures representing mite behavior responses, essential oil composition variations, and concentration-related effects.</li> </ol> <p>The dataset contributes valuable information to the field of natural pest management and plant-arthropod interactions. Researchers, agronomists, and entomologists interested in understanding the potential of essential oils for pest control and the importance of phytochemical diversity in pest behavior modulation will find this dataset beneficial for further analysis and validation.</p> <p>By accessing this dataset, researchers can delve into the intricate relationship between tomato essential oils and the behavior of the tomato red spider mite, paving the way for innovative approaches to mitigate pest damage and enhance crop productivity.</p> <p>License: The dataset is made available under the Creative Commons Attribution 4.0 International License.The dataset contains comprehensive experimental data and analytical results from a study conducted to explore the interaction between tomato essential oils and the tomato red spider mite (<em>T. evansi</em>). The study involved essential oils extracted from seven distinct tomato accessions (<em>Solanum lycopersicum L.</em>), namely accessions 1 (money maker), 13 (marglobe), 51 (PI 134417), 162 (JKUAT 22/202183), 182 (JKUAT 19), 428 (LA 2185), and 460 (LO 3279). The dataset encompasses the following components:</p> <ol> <li><strong>Essential Oil Extraction Data:</strong> Details of the steam distillation process used to extract essential oils from each tomato accession, including extraction time and yield.</li> <li><strong>Spider Mite Response Data:</strong> Results from Y-tube olfactometer and glass slide bioassays measuring the response of <em>T. evansi</em> to essential oils from different accessions. Responses include attraction, repulsion, or neutrality.</li> <li><strong>Gas Chromatography/Mass Spectrometry (GC/MS) Analysis:</strong> Analytical data presenting the chemical composition of volatile compounds released by the essential oils. Quantitative and qualitative variations among accessions are documented, highlighting key compounds influencing mite behavior.</li> <li><strong>Statistical Analysis:</strong> Statistical tests conducted to assess significant differences in mite responses to various essential oil concentrations and accessions.</li> <li><strong>Visualizations:</strong> Graphs, charts, and figures representing mite behavior responses, essential oil composition variations, and concentration-related effects.</li> </ol> <p>The dataset contributes valuable information to the field of natural pest management and plant-arthropod interactions. Researchers, agronomists, and entomologists interested in understanding the potential of essential oils for pest control and the importance of phytochemical diversity in pest behavior modulation will find this dataset beneficial for further analysis and validation.</p> <p>By accessing this dataset, researchers can delve into the intricate relationship between tomato essential oils and the behavior of the tomato red spider mite, paving the way for innovative approaches to mitigate pest damage and enhance crop productivity.</p> <p>License: The dataset is made available under the Creative Commons Attribution 4.0 International License.The dataset contains comprehensive experimental data and analytical results from a study conducted to explore the interaction between tomato essential oils and the tomato red spider mite (<em>T. evansi</em>). The study involved essential oils extracted from seven distinct tomato accessions (<em>Solanum lycopersicum L.</em>), namely accessions 1 (money maker), 13 (marglobe), 51 (PI 134417), 162 (JKUAT 22/202183), 182 (JKUAT 19), 428 (LA 2185), and 460 (LO 3279). The dataset encompasses the following components:</p> <ol> <li><strong>Essential Oil Extraction Data:</strong> Details of the steam distillation process used to extract essential oils from each tomato accession, including extraction time and yield.</li> <li><strong>Spider Mite Response Data:</strong> Results from Y-tube olfactometer and glass slide bioassays measuring the response of <em>T. evansi</em> to essential oils from different accessions. Responses include attraction, repulsion, or neutrality.</li> <li><strong>Gas Chromatography/Mass Spectrometry (GC/MS) Analysis:</strong> Analytical data presenting the chemical composition of volatile compounds released by the essential oils. Quantitative and qualitative variations among accessions are documented, highlighting key compounds influencing mite behavior.</li> <li><strong>Statistical Analysis:</strong> Statistical tests conducted to assess significant differences in mite responses to various essential oil concentrations and accessions.</li> <li><strong>Visualizations:</strong> Graphs, charts, and figures representing mite behavior responses, essential oil composition variations, and concentration-related effects.</li> </ol> <p>The dataset contributes valuable information to the field of natural pest management and plant-arthropod interactions. Researchers, agronomists, and entomologists interested in understanding the potential of essential oils for pest control and the importance of phytochemical diversity in pest behavior modulation will find this dataset beneficial for further analysis and validation.</p> <p>By accessing this dataset, researchers can delve into the intricate relationship between tomato essential oils and the behavior of the tomato red spider mite, paving the way for innovative approaches to mitigate pest damage and enhance crop productivity.</p> <p>License: The dataset is made available under the Creative Commons Attribution 4.0 International License.The dataset contains comprehensive experimental data and analytical results from a study conducted to explore the interaction between tomato essential oils and the tomato red spider mite (<em>T. evansi</em>). The study involved essential oils extracted from seven distinct tomato accessions (<em>Solanum lycopersicum L.</em>), namely accessions 1 (money maker), 13 (marglobe), 51 (PI 134417), 162 (JKUAT 22/202183), 182 (JKUAT 19), 428 (LA 2185), and 460 (LO 3279). The dataset encompasses the following components:</p> <ol> <li><strong>Essential Oil Extraction Data:</strong> Details of the steam distillation process used to extract essential oils from each tomato accession, including extraction time and yield.</li> <li><strong>Spider Mite Response Data:</strong> Results from Y-tube olfactometer and glass slide bioassays measuring the response of <em>T. evansi</em> to essential oils from different accessions. Responses include attraction, repulsion, or neutrality.</li> <li><strong>Gas Chromatography/Mass Spectrometry (GC/MS) Analysis:</strong> Analytical data presenting the chemical composition of volatile compounds released by the essential oils. Quantitative and qualitative variations among accessions are documented, highlighting key compounds influencing mite behavior.</li> <li><strong>Statistical Analysis:</strong> Statistical tests conducted to assess significant differences in mite responses to various essential oil concentrations and accessions.</li> <li><strong>Visualizations:</strong> Graphs, charts, and figures representing mite behavior responses, essential oil composition variations, and concentration-related effects.</li> </ol> <p>The dataset contributes valuable information to the field of natural pest management and plant-arthropod interactions. Researchers, agronomists, and entomologists interested in understanding the potential of essential oils for pest control and the importance of phytochemical diversity in pest behavior modulation will find this dataset beneficial for further analysis and validation.</p> <p>By accessing this dataset, researchers can delve into the intricate relationship between tomato essential oils and the behavior of the tomato red spider mite, paving the way for innovative approaches to mitigate pest damage and enhance crop productivity.</p> <p>License: The dataset is made available under the Creative Commons Attribution 4.0 International License.The dataset contains comprehensive experimental data and analytical results from a study conducted to explore the interaction between tomato essential oils and the tomato red spider mite (<em>T. evansi</em>). The study involved essential oils extracted from seven distinct tomato accessions (<em>Solanum lycopersicum L.</em>), namely accessions 1 (money maker), 13 (marglobe), 51 (PI 134417), 162 (JKUAT 22/202183), 182 (JKUAT 19), 428 (LA 2185), and 460 (LO 3279). The dataset encompasses the following components:</p> <ol> <li><strong>Essential Oil Extraction Data:</strong> Details of the steam distillation process used to extract essential oils from each tomato accession, including extraction time and yield.</li> <li><strong>Spider Mite Response Data:</strong> Results from Y-tube olfactometer and glass slide bioassays measuring the response of <em>T. evansi</em> to essential oils from different accessions. Responses include attraction, repulsion, or neutrality.</li> <li><strong>Gas Chromatography/Mass Spectrometry (GC/MS) Analysis:</strong> Analytical data presenting the chemical composition of volatile compounds released by the essential oils. Quantitative and qualitative variations among accessions are documented, highlighting key compounds influencing mite behavior.</li> <li><strong>Statistical Analysis:</strong> Statistical tests conducted to assess significant differences in mite responses to various essential oil concentrations and accessions.</li> <li><strong>Visualizations:</strong> Graphs, charts, and figures representing mite behavior responses, essential oil composition variations, and concentration-related effects.</li> </ol> <p>The dataset contributes valuable information to the field of natural pest management and plant-arthropod interactions. Researchers, agronomists, and entomologists interested in understanding the potential of essential oils for pest control and the importance of phytochemical diversity in pest behavior modulation will find this dataset beneficial for further analysis and validation.</p> <p>By accessing this dataset, researchers can delve into the intricate relationship between tomato essential oils and the behavior of the tomato red spider mite, paving the way for innovative approaches to mitigate pest damage and enhance crop productivity.</p> <p>License: The dataset is made available under the Creative Commons Attribution 4.0 International License.The dataset contains comprehensive experimental data and analytical results from a study conducted to explore the interaction between tomato essential oils and the tomato red spider mite (<em>T. evansi</em>). The study involved essential oils extracted from seven distinct tomato accessions (<em>Solanum lycopersicum L.</em>), namely accessions 1 (money maker), 13 (marglobe), 51 (PI 134417), 162 (JKUAT 22/202183), 182 (JKUAT 19), 428 (LA 2185), and 460 (LO 3279). The dataset encompasses the following components:</p> <ol> <li><strong>Essential Oil Extraction Data:</strong> Details of the steam distillation process used to extract essential oils from each tomato accession, including extraction time and yield.</li> <li><strong>Spider Mite Response Data:</strong> Results from Y-tube olfactometer and glass slide bioassays measuring the response of <em>T. evansi</em> to essential oils from different accessions. Responses include attraction, repulsion, or neutrality.</li> <li><strong>Gas Chromatography/Mass Spectrometry (GC/MS) Analysis:</strong> Analytical data presenting the chemical composition of volatile compounds released by the essential oils. Quantitative and qualitative variations among accessions are documented, highlighting key compounds influencing mite behavior.</li> <li><strong>Statistical Analysis:</strong> Statistical tests conducted to assess significant differences in mite responses to various essential oil concentrations and accessions.</li> <li><strong>Visualizations:</strong> Graphs, charts, and figures representing mite behavior responses, essential oil composition variations, and concentration-related effects.</li> </ol> <p>The dataset contributes valuable information to the field of natural pest management and plant-arthropod interactions. Researchers, agronomists, and entomologists interested in understanding the potential of essential oils for pest control and the importance of phytochemical diversity in pest behavior modulation will find this dataset beneficial for further analysis and validation.</p> <p>By accessing this dataset, researchers can delve into the intricate relationship between tomato essential oils and the behavior of the tomato red spider mite, paving the way for innovative approaches to mitigate pest damage and enhance crop productivity.</p> <p>License: The dataset is made available under the Creative Commons Attribution 4.0 International License.The dataset contains comprehensive experimental data and analytical results from a study conducted to explore the interaction between tomato essential oils and the tomato red spider mite (<em>T. evansi</em>). The study involved essential oils extracted from seven distinct tomato accessions (<em>Solanum lycopersicum L.</em>), namely accessions 1 (money maker), 13 (marglobe), 51 (PI 134417), 162 (JKUAT 22/202183), 182 (JKUAT 19), 428 (LA 2185), and 460 (LO 3279). The dataset encompasses the following components:</p> <ol> <li><strong>Essential Oil Extraction Data:</strong> Details of the steam distillation process used to extract essential oils from each tomato accession, including extraction time and yield.</li> <li><strong>Spider Mite Response Data:</strong> Results from Y-tube olfactometer and glass slide bioassays measuring the response of <em>T. evansi</em> to essential oils from different accessions. Responses include attraction, repulsion, or neutrality.</li> <li><strong>Gas Chromatography/Mass Spectrometry (GC/MS) Analysis:</strong> Analytical data presenting the chemical composition of volatile compounds released by the essential oils. Quantitative and qualitative variations among accessions are documented, highlighting key compounds influencing mite behavior.</li> <li><strong>Statistical Analysis:</strong> Statistical tests conducted to assess significant differences in mite responses to various essential oil concentrations and accessions.</li> <li><strong>Visualizations:</strong> Graphs, charts, and figures representing mite behavior responses, essential oil composition variations, and concentration-related effects.</li> </ol> <p>The dataset contributes valuable information to the field of natural pest management and plant-arthropod interactions. Researchers, agronomists, and entomologists interested in understanding the potential of essential oils for pest control and the importance of phytochemical diversity in pest behavior modulation will find this dataset beneficial for further analysis and validation.</p> <p>By accessing this dataset, researchers can delve into the intricate relationship between tomato essential oils and the behavior of the tomato red spider mite, paving the way for innovative approaches to mitigate pest damage and enhance crop productivity.</p> <p> </p>
Wednesday 6 May: Deriving Specific Small-Scale Collections, Federico Nanni, Alan Turing Institute
<p>Wednesday 6 May: Deriving Specific Small-Scale Collections, Federico Nanni, Alan Turing Institute</p>
Data from: Enhanced specific loss power of hematite-chitosan nanohybrid synthesized by hydrothermal method
<p>We used a hydrothermal technique for producing hematite (a-Fe2O3) nanoparticles that were then functionalized with chitosan. The prepared iron oxide (a-Fe2O3) nanoparticles were single-phase, according to XRD analysis. The presence of lattice fringes in the HRTEM image confirmed the crystalline nature of the a-Fe2O3. The samples were coated with chitosan and the coating was confirmed by the spectra of Fourier transform infrared (FTIR) analysis. The Mössbauer spectra reveal a mixed relaxation state, which is also supported by the PPMS study. A zero field cooled study revealed the existence of a Morin transition. The hydrodynamic diameter of the coated particles was measured using the dynamic light scattering technique (DLS) to be between 218 and 235 nm, with a polydispersity index ranging from 0.048 to 0.119. The zeta potential was +46.8 mV, which is appropriate for colloidal stability. Both the Vero and HeLa cell lines demonstrated viability incubated for 24 hrs. with the colloids of different concentrations. The maximum temperature, Tmax attained by the hematite-chitosan nanohybrid solution of 0.25 and 4 mg/ml — the lowest and highest concentration, was 42.9 and 48.3ºC, and the specific loss power, SLP was 501.6 and 35.53, which are remarkably high for the Mmax; 300K = 1.98 emu/g.</p>
Dataset and R code from RDA WG Discipline-Specific Guidance on DMP - Online Survey
<p>Dataset from the Online Survey of the <a href="https://www.rd-alliance.org/groups/discipline-specific-guidance-data-management-plans-wg">Research Data Alliance's Discipline-Specific Guidance for Data Management Plans Working Group</a>.</p> <p><br> The data was collected from November 8, 2021 to January 14, 2022.</p> <p>The survey was divided into the following areas after a brief introduction on "Purpose of this survey" and "Use of the information you provide."</p> <ul> <li>Demographics</li> <li>Data Description and Collection</li> <li>Data Documentation & Quality</li> <li>Data Archiving, Publishing & Sharing After the Project</li> <li>Guidelines, Principles & Best Practices</li> <li>Follow-up interviews and group discussions</li> </ul> <p>The analysis of the online survey was focused on the four areas: Natural Sciences, Life Sciences, Humanities & Social Sciences, and Engineering. The results of the evaluation will be presented in a separate publication.</p> <p>In addition to the data, the variables and values are also published here.</p> <p>The online survey questions can be accessed here: https://doi.org/10.5281/zenodo.7443373</p> <p>A more detailed analysis and description can be found in the paper "Discipline-specific Aspects in Data Management Planning" submitted to Data Science Journal (2022-12-15).</p>
Alpine plant species converge towards adopting elevation-specific resource-acquisition strategy in response to experimental early snow-melting
<p>An experimental to assess the effect of early snow-melting on alpine species at contrasting elevation was established in 2019 at Rohtang (32°22' N; 77°16' E) in western Himalaya. After completion of 02 year of experiment, sampling was performed on 08 alpine plant species. We have collected leaf functional trait and physiological traits during peak growing season (August 2020) from two elevation (3850 and 4150 m) and from control and treatment plots. The trait values of 15 replicates for each species were given here for leaf functional traits (viz. leaf area, specific leaf area, leaf dry matter content, leaf water content, plant height) and trait values of 05 replicated for each species were given for elemental (Nitrogen % and carbon/nitrogen ratio ) and physiological traits (leaf chlorophyll content, Carotenoid content, Malondialdehyde equivalents, Phenol content, Proline content, Total soluble Sugar content, Total protein content). We have provided trait values from both control and treatment plots. </p>
Comprehensive characterization of HNF4A and HNF1A genomic targets in pancreatic beta cells and hepatic cells reveals common and tissue-specific gene regulation
<p>Molecular dynamics simulation input files, initial and final coordinate files</p>
Supplementary material 1 from: Tang D, Zhao J, Lu Y, Wang Z, Sun T, Liu Z, Yu H (2023) Morphology, phylogeny and host specificity of two new Ophiocordyceps species belonging to the "zombie-ant fungi" clade (Ophiocordycipitaceae, Hypocreales). MycoKeys 99: 269-296. https://doi.org/10.3897/mycokeys.99.107565
Phylogenetic tree of Ophiocordyceps and related genera, based on single gene SSU sequence
Supplementary material 2 from: Tang D, Zhao J, Lu Y, Wang Z, Sun T, Liu Z, Yu H (2023) Morphology, phylogeny and host specificity of two new Ophiocordyceps species belonging to the "zombie-ant fungi" clade (Ophiocordycipitaceae, Hypocreales). MycoKeys 99: 269-296. https://doi.org/10.3897/mycokeys.99.107565
Phylogenetic tree of Ophiocordyceps and related genera, based on single gene TEF1a sequence
Supplementary material 3 from: Tang D, Zhao J, Lu Y, Wang Z, Sun T, Liu Z, Yu H (2023) Morphology, phylogeny and host specificity of two new Ophiocordyceps species belonging to the "zombie-ant fungi" clade (Ophiocordycipitaceae, Hypocreales). MycoKeys 99: 269-296. https://doi.org/10.3897/mycokeys.99.107565
Phylogenetic tree of Ophiocordyceps and related genera, based on single gene RPB1 sequence
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.