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4,144 results for “ITS barcode”
Figure 3 from: Carvalho-Batista A, Negri M, Pileggi LG, Castilho AL, Costa RC, Mantelatto FL (2014) Inferring population connectivity across the range of distribution of the stiletto shrimp Artemesia longinaris Spence Bate, 1888 (Decapoda, Penaeidae) from DNA barcoding: implications for fishery management. In: Wehrtmann IS, Bauer RT (Eds) Proceedings of the Summer Meeting of the Crustacean Society and the Latin American Association of Carcinology, Costa Rica, July 2013. ZooKeys 457: 271-288. https://doi.org/10.3897/zookeys.457.6569
Figure 3 - Phylogram for individuals of Artemesia longinaris inferred from Maximum Likelihood analysis of COI gene sequences. Localities represent analyzed specimens. Numbers are bootstrap support values (1000 replicates); values below 50% are not shown.
Figure 5 from: Tedersoo L, Anslan S, Bahram M, Põlme S, Riit T, Liiv I, Kõljalg U, Kisand V, Nilsson RH, Hildebrand F, Bork P, Abarenkov K (2015) Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi. MycoKeys 10: 1-43. https://doi.org/10.3897/mycokeys.10.4852
Figure 5 - Global Nonmetric Multidimensional Scaling (NMDS) graph demonstrating the relative placement of samples (lower case letters, encoded in Suppl. material 1) in the ordination space. 95% confidence ellipses are indicated for each barcode-primer pair combination. For two-dimensional solution, stress=0.191 (R2=0.875).
Figure 2 from: Tedersoo L, Anslan S, Bahram M, Põlme S, Riit T, Liiv I, Kõljalg U, Kisand V, Nilsson RH, Hildebrand F, Bork P, Abarenkov K (2015) Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi. MycoKeys 10: 1-43. https://doi.org/10.3897/mycokeys.10.4852
Figure 2 - Sample-based OTU richness as recovered by different barcode-primer pair combinations. Error bars denote standard error; different letters indicate statistically different groups.
Figure 1 from: Tedersoo L, Anslan S, Bahram M, Põlme S, Riit T, Liiv I, Kõljalg U, Kisand V, Nilsson RH, Hildebrand F, Bork P, Abarenkov K (2015) Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi. MycoKeys 10: 1-43. https://doi.org/10.3897/mycokeys.10.4852
Figure 1 - Map of ribosomal DNA indicating variable regions as well as primers used and/or discussed in this study. Primers pairs used for HTS are highlighted.
Figure 3 from: Tedersoo L, Anslan S, Bahram M, Põlme S, Riit T, Liiv I, Kõljalg U, Kisand V, Nilsson RH, Hildebrand F, Bork P, Abarenkov K (2015) Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi. MycoKeys 10: 1-43. https://doi.org/10.3897/mycokeys.10.4852
Figure 3 - Rarefied OTU accumulation curves for samples based on the (a) ITS1 and (b) ITS2 barcodes and their 95% confidence intervals.
Figure 6 from: Tedersoo L, Anslan S, Bahram M, Põlme S, Riit T, Liiv I, Kõljalg U, Kisand V, Nilsson RH, Hildebrand F, Bork P, Abarenkov K (2015) Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi. MycoKeys 10: 1-43. https://doi.org/10.3897/mycokeys.10.4852
Figure 6 - Relative abundance of fungal classes in the amplicon and metagenomics data sets divided into SSU, ITS, and LSU subsets averaged over different barcodes (amplicon data) and 14 shared samples. Asterisks in the margins indicate significant differences in recovery of classes among SSU, ITS, and LSU of metagenomics (right) and amplicon (left) data sets. Asterisks in the center indicate significant differences between the metagenomics and amplicon-bases approaches.
Figure 7 from: Tedersoo L, Anslan S, Bahram M, Põlme S, Riit T, Liiv I, Kõljalg U, Kisand V, Nilsson RH, Hildebrand F, Bork P, Abarenkov K (2015) Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi. MycoKeys 10: 1-43. https://doi.org/10.3897/mycokeys.10.4852
Figure 7 - Differences in sequence length in the ITS1 and ITS2 barcodes of 16 most abundant fungal classes as revealed based on amplicon libraries in this study. Columns, asterisks, and error bars represent mean and median values and standard deviation, respectively. Numbers inside bars indicate the number of sequences analyzed (n). Taxa are ordered by average length of the ITS1 region.
Figure 4 from: Tedersoo L, Anslan S, Bahram M, Põlme S, Riit T, Liiv I, Kõljalg U, Kisand V, Nilsson RH, Hildebrand F, Bork P, Abarenkov K (2015) Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi. MycoKeys 10: 1-43. https://doi.org/10.3897/mycokeys.10.4852
Figure 4 - Relationship between connectance and adjusted coefficient of determination (R2adj) for floristic variables across different barcode-primer pair combinations based on (a) Bray-Curtis distance and (b) Hellinger distance. Pointed line indicates correlation in the ITS1Fngs-ITS2 data set (filled circles), covering eight connectance classes (C<0.45). Open circles, other ITS1 and ITS2 primer pairs; triangles, SSU barcodes; rectangles, LSU barcodes.
Figure 3 from: van der Bank H, Greenfield R (2015) A pioneer survey and DNA barcoding of some commonly found gastropod molluscs on Robben Island. ZooKeys 481: 15-23. https://doi.org/10.3897/zookeys.481.8188
Figure 3 - A parsimonious bootstrap (50% majority-rule) consensus tree obtained for the marine snails, using Semimytilus algosus as the outgroup.
Figure 2 from: van der Bank H, Greenfield R (2015) A pioneer survey and DNA barcoding of some commonly found gastropod molluscs on Robben Island. ZooKeys 481: 15-23. https://doi.org/10.3897/zookeys.481.8188
Figure 2 - A parsimonious bootstrap (50% majority-rule) consensus tree obtained for the land snails, using Semimytilus algosus as the outgroup.
Figure 5 from: Garcia-Robledo C, Staines CL, Kress WJ (2015) A new species of bromeliad-feeding Cephaloleia Chevrolat (Coleoptera, Chrysomelidae, Cassidinae) from Costa Rica: evidence from DNA barcodes, larval and adult morphology and insect diets. ZooKeys 477: 143-155. https://doi.org/10.3897/zookeys.477.8220
Figure 5 - Differences in microstructures between larvae of Cephaloleia kuprewiczae (left column) and Cephaloleia histrionica (right column). A–B Head C–D Details of dorsal papillae and spiracles E–F Detail of spiracle and surrounding setae G–H Front leg. cl: clypeus, hy: hypopharynx, lb: labrum, lbi: labium, lp: labial palp, ma: malum, mn: mandibula, mp: maxillary palp, p: palpifer, se: seta, sp: spiracle, st: stipe.
Figure 6 from: Garcia-Robledo C, Staines CL, Kress WJ (2015) A new species of bromeliad-feeding Cephaloleia Chevrolat (Coleoptera, Chrysomelidae, Cassidinae) from Costa Rica: evidence from DNA barcodes, larval and adult morphology and insect diets. ZooKeys 477: 143-155. https://doi.org/10.3897/zookeys.477.8220
Figure 6 - A Frequency distributions of inter and intraspecific similarities for beetle COI sequences (paired comparisons, percentage of bases/residuals that are identical for each comparison for cytochrome oxidase I (COI) sequences included in Figure 6B). B Identification of Cephaloleia kuprewiczae sp. n. and Cephaloleia histrionica using cytochrome oxidase I (COI) sequences. Neighbor-joining tree includes bootstrap values (%) supporting species identifications. Filled circles represent DNA sequences obtained from adults. Empty circles represent DNA sequences obtained from larvae.
Figure 4 from: Garcia-Robledo C, Staines CL, Kress WJ (2015) A new species of bromeliad-feeding Cephaloleia Chevrolat (Coleoptera, Chrysomelidae, Cassidinae) from Costa Rica: evidence from DNA barcodes, larval and adult morphology and insect diets. ZooKeys 477: 143-155. https://doi.org/10.3897/zookeys.477.8220
Figure 4 - Larvae of Cephaloleia kuprewiczae (A) and Cephaloleia histrionica (B) feeding on their host plants. Scale bars = 3 mm.
Figure 3 from: Garcia-Robledo C, Staines CL, Kress WJ (2015) A new species of bromeliad-feeding Cephaloleia Chevrolat (Coleoptera, Chrysomelidae, Cassidinae) from Costa Rica: evidence from DNA barcodes, larval and adult morphology and insect diets. ZooKeys 477: 143-155. https://doi.org/10.3897/zookeys.477.8220
Figure 3 - A Egg B–C First instar larva (dorsal and ventral views) D–E Second instar larva (dorsal and ventral views). F Adult Cephaloleia histrionica. Scale bars in all panels = 1 mm. From García-Robledo et al. 2013a.
Figure 2 from: Garcia-Robledo C, Staines CL, Kress WJ (2015) A new species of bromeliad-feeding Cephaloleia Chevrolat (Coleoptera, Chrysomelidae, Cassidinae) from Costa Rica: evidence from DNA barcodes, larval and adult morphology and insect diets. ZooKeys 477: 143-155. https://doi.org/10.3897/zookeys.477.8220
Figure 2 - A–B Cephaloleia kuprewiczae A dorsal view B ventral view C–D Cephaloleia histrionica C Dorsal view D Ventral view. Scale bars = 3 mm.
Figure 1 from: Garcia-Robledo C, Staines CL, Kress WJ (2015) A new species of bromeliad-feeding Cephaloleia Chevrolat (Coleoptera, Chrysomelidae, Cassidinae) from Costa Rica: evidence from DNA barcodes, larval and adult morphology and insect diets. ZooKeys 477: 143-155. https://doi.org/10.3897/zookeys.477.8220
Figure 1 - Pitcairnia arcuata and Pitcairnia brittoniana (Bromeliaceae), host plants of Cephaloleia kuprewiczae. A Pitcairnia arcuata, habit B Detail of a rolled leaf used as a larval and adult food source and adult oviposition site C Pitcairnia arcuata Inflorescence D Pitcairnia brittoniana inflorescence E Leaf damage produced by a feeding adult Cephaloleia histrionica. Scale bars: A–C = 10 cm; D, E = 1 cm. Modified from García-Robledo et al. 2013a.
Figure 4 from: Stur E, Borkent A (2014) When DNA barcoding and morphology mesh: Ceratopogonidae diversity in Finnmark, Norway. ZooKeys 463: 95-131. https://doi.org/10.3897/zookeys.463.7964
Figure 4 - A, B Forcipomyia sp. 5 female A terminalia, in ventral view B head, in anterior view C, D Forcipomyia sp. 4 female C terminalia, in ventral view D head, in anterior view.
Figure 2 from: Stur E, Borkent A (2014) When DNA barcoding and morphology mesh: Ceratopogonidae diversity in Finnmark, Norway. ZooKeys 463: 95-131. https://doi.org/10.3897/zookeys.463.7964
Figure 2 - Taxon-ID tree of the studied Ceratopogonidae specimens based on the neighbor joining algorithm from aligned COI sequences using partial deletion for areas with gaps and 1000 bootstrap replicates in MEGA 5.2. All included sequences were longer than 500 bp. Bootstrap values shown on branches supported by more than 90% of the bootstrap replicates.
Figure 3 from: Stur E, Borkent A (2014) When DNA barcoding and morphology mesh: Ceratopogonidae diversity in Finnmark, Norway. ZooKeys 463: 95-131. https://doi.org/10.3897/zookeys.463.7964
Figure 3 - A, B Forcipomyia hygrophila female A terminalia, in ventral view B head, in anterior view C, D Forcipomyia sp. 1 female C terminalia, in ventral view D head, in anterior view.
Figure 1 from: Stur E, Borkent A (2014) When DNA barcoding and morphology mesh: Ceratopogonidae diversity in Finnmark, Norway. ZooKeys 463: 95-131. https://doi.org/10.3897/zookeys.463.7964
Figure 1 - Sample sites for Ceratopogonidae in Finnmark, Norway, in 2010. Modified after Fig. 2 in Ekrem et al. (2012). Map by Marc Daverdin, NTNU University Museum.
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Allen Brain Atlas
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International Brain Laboratory public data
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OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.