Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
4,753
datasets available to search
ShareScore release 0.9.0
Dataset results
4,753 results for “SHAPE”
DNA-guided transcription factor cooperativity shapes face and limb mesenchyme [RNA-seq]
GEO Series GSE230318. Homo sapiens. 87 samples. Type: Expression profiling by high throughput sequencing.
The Double-Strand Break Landscape of Meiotic Chromosomes Is Shaped by the Paf1 Transcription Elongation Complex in Saccharomyces cerevisiae
GEO Series GSE72827. Saccharomyces cerevisiae. 4 samples. Type: Other.
Dynamic fibroblast-immune interactions shape recovery after brain injury [snRNASeq_Tgfb]
GEO Series GSE254163. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Type II topoisomerases shape multi-scale 3D chromatin folding in regions of positive supercoils (LaminB1 CnR).
GEO Series GSE255734. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
TAD cliques shape the 4-dimensional genome during dual lineage terminal differentiation
GEO Series GSE109924. Homo sapiens. 34 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Footprinting SHAPE-eCLIP reveals transcriptome-wide hydrogen bonds at RNA-protein interfaces
GEO Series GSE149767. Homo sapiens. 40 samples. Type: Other; Third-party reanalysis.
Fibroblast-Derived Thrombospondin 2 Shapes the Immune-Exclusionary Environment at Invasive Fronts in Colorectal Cancer [Visium
GEO Series GSE285505. Homo sapiens. 4 samples. Type: Other.
Functional and cellular constraints that shaped the PPARg binding landscape in human and mouse macrophages: human expression
GEO Series GSE25137. Homo sapiens. 59 samples. Type: Expression profiling by array.
Early anteroposterior regionalisation of human neural crest is shaped by a pro-mesodermal factor
GEO Series GSE184622. Homo sapiens. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
High-Resolution Profiling of Drosophila Replication Start Sites Reveals a DNA Shape and Chromatin Signature of Metazoan Origins
GEO Series GSE65692. Drosophila melanogaster. 9 samples. Type: Other.
A single-cell atlas of mouse brain macrophages reveals unique transcriptional identities shaped by ontogeny and tissue environment.
GEO Series GSE128855. Mus musculus. 35 samples. Type: Expression profiling by high throughput sequencing.
Cooperation of chromatin remodeling SWI/SNF complex and pioneer factor AP1 shapes 3D enhancer landscapes [ATAC-Seq]
GEO Series GSE196957. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ARID1A loss shapes immunosuppression tumor microenvironment via NF-kB induced MDSC chemotaxis to promote prostate Cancer metastasis [RNA-seq II]
GEO Series GSE213251. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Natural selection shapes genome wide patterns of copy number polymorphism in D. melanogaster
GEO Series GSE11326. Drosophila melanogaster. 15 samples. Type: Genome variation profiling by genome tiling array.
MreCD are required for correct cell shape, biofilm architecture and interspecies competition in Streptococcus mutans
GEO Series GSE165679. Streptococcus mutans. 6 samples. Type: Expression profiling by high throughput sequencing.
Pre-marked chromatin and transcription factor co-binding shape the pioneering activity of Foxa2 [RNA-seq]
GEO Series GSE116259. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Transcription factor shapes chromosomal conformation and regulates gene expression in bacterial adaptation [Hi-C]
GEO Series GSE221497. Zymomonas mobilis. 10 samples. Type: Other.
A discrete chromatin loop in the murine Tcra/Tcrd locus shapes the TCRδ and TCRα repertoires
GEO Series GSE67442. Mus musculus. 4 samples. Type: Other.
Transcription and loop extrusion cooperatively shape the 3D genome of developing slime mold Dictyostelium discoideum [RNA-seq]
GEO Series GSE246367. Dictyostelium discoideum. 8 samples. Type: Expression profiling by high throughput sequencing.
Cytokine–ontogeny interaction shapes macrophage transcriptional states (M-CSF–derived macrophages)
GEO Series GSE304647. Mus musculus. 25 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.