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Supplementary material 1 from: Ng TH, Jeratthitikul E, Sutcharit C, Chhuoy S, Pin K, Pholyotha A, Siriwut W, Srisonchai R, Hogan ZS, Ngor PB (2020) Annotated checklist of freshwater molluscs from the largest freshwater lake in Southeast Asia. ZooKeys 958: 107-141. https://doi.org/10.3897/zookeys.958.53865
Table S1. Historical records of freshwater molluscs from Cambodia
Figure 6 from: Ng TH, Jeratthitikul E, Sutcharit C, Chhuoy S, Pin K, Pholyotha A, Siriwut W, Srisonchai R, Hogan ZS, Ngor PB (2020) Annotated checklist of freshwater molluscs from the largest freshwater lake in Southeast Asia. ZooKeys 958: 107-141. https://doi.org/10.3897/zookeys.958.53865
Figure 6 Mytilid colonies from Tonle Sap Lake, Cambodia growing on the shells of other freshwater molluscs AHyriopsis bialataBContradens contradensCMekongia rattei. Photographs by A Pholyotha (A, B) and TH Ng (C).
Figure 3 from: Ng TH, Jeratthitikul E, Sutcharit C, Chhuoy S, Pin K, Pholyotha A, Siriwut W, Srisonchai R, Hogan ZS, Ngor PB (2020) Annotated checklist of freshwater molluscs from the largest freshwater lake in Southeast Asia. ZooKeys 958: 107-141. https://doi.org/10.3897/zookeys.958.53865
Figure 3 Freshwater bivalves of the Tonle Sap basin, Cambodia (Pharidae and Unionidae) ANovaculina siamensisBBineurus mouhotiiCContradens contradensDEnsidens ingallsianusEHyriopsis bialataFHyriopsis delaporteiGMonodontina cambodjensisHPhysunio micropterusIPilsbryoconcha linguaeformisJPilsbryoconcha lemeslei and KScabies mandarinus. Scale bars: 10 mm, unless stated otherwise. Photographs by K Macharoenboon.
Figure 2 from: Ng TH, Jeratthitikul E, Sutcharit C, Chhuoy S, Pin K, Pholyotha A, Siriwut W, Srisonchai R, Hogan ZS, Ngor PB (2020) Annotated checklist of freshwater molluscs from the largest freshwater lake in Southeast Asia. ZooKeys 958: 107-141. https://doi.org/10.3897/zookeys.958.53865
Figure 2 Freshwater bivalves of the Tonle Sap basin, Cambodia (Arcidae, Mytilidae, Cyrenidae) AScaphula minutaBLimnoperna fortuneiCSinomytilus harmandiD–GCorbicula spp. Scale bars: 10 mm, unless stated otherwise. Photographs by TH Ng (A–C) and K Macharoenboon (D–G).
FIGURE 41 in New species of Rivudiva Lugo-Ortiz & McCafferty (Ephemeroptera: Baetidae) with comments on R. minantenna Lugo-Ortiz & McCafferty and R. trichobasis Lugo-Ortiz & McCafferty
FIGURE 41. Map of South America showing the distribution of the distinct species of Rivudiva.
Supplementary material 1 from: Walton S, Livermore L, Bánki O, Cubey RWN, Drinkwater R, Englund M, Goble C, Groom Q, Kermorvant C, Rey I, Santos CM, Scott B, Williams AR, Wu Z (2020) Landscape Analysis for the Specimen Data Refinery. Research Ideas and Outcomes 6: e57602. https://doi.org/10.3897/rio.6.e57602
Tools and services evaluation speadsheet
Figure 1 from: Walton S, Livermore L, Bánki O, Cubey RWN, Drinkwater R, Englund M, Goble C, Groom Q, Kermorvant C, Rey I, Santos CM, Scott B, Williams AR, Wu Z (2020) Landscape Analysis for the Specimen Data Refinery. Research Ideas and Outcomes 6: e57602. https://doi.org/10.3897/rio.6.e57602
Figure 1 An overview of potential Specimen Data Refinery workflows based on image inputs and their derivatives, datasets and services.
The performance of permutations and exponential random graph models when analysing animal networks (R code and data)
<p>Social network analysis is a suite of approaches for exploring relational data. Two approaches commonly used to analyse animal social network data are permutation-based tests of significance and exponential random graph models. However, the performance of these approaches when analysing different types of network data has not been simultaneously evaluated. Here we test both approaches to determine their performance when analysing a range of biologically realistic simulated animal social networks. We examined the false positive and false negative error rate of an effect of a two-level explanatory variable (e.g. sex) on the number and combined strength of an individual's network connections. We measured error rates for two types of simulated data collection methods in a range of network structures, and with/without a confounding effect and missing observations. Both methods performed consistently well in networks of dyadic interactions, and worse on networks constructed using observations of individuals in groups. Exponential random graph models had a marginally lower rate of false positives than permutations in most cases. Phenotypic assortativity had a large influence on the false positive rate, and a smaller effect on the false negative rate for both methods in all network types. Aspects of within- and between-group network structure influenced error rates, but not to the same extent. In grouping-event based networks, increased sampling effort marginally decreased rates of false negatives, but increased rates of false positives for both analysis methods. These results provide guidelines for biologists analysing and interpreting their own network data using these methods.</p>
Figures 13-18 from: Singh N, Kirti JS, Ranjan R, Chandra K, Speidel W (2020) On the taxonomy of the genus Sacada Walker, 1862 from India, with descriptions of a new genus and two new species (Pyralinae, Pyralidae, Lepidoptera). ZooKeys 962: 139-163. https://doi.org/10.3897/zookeys.962.51194
Figures 13-18 Adults of Sacada and Pseudosacada spp. 13S. pallescens Hampson (male), lectotype, Bhutan 14S. decora Walker, Singapore 15Pseudosacada flexuosa (Snellen) (= Sybrida inflammealis Ragonot), India 16P. flexuosa (Snellen) (male), Kanhmun, Mizoram, India 17P. flexuosa (Snellen) (male), Umtasor, Meghalaya, India 18P. flexuosa (Snellen) (male), Ganeshgudi, Karnataka, India. Scale bars: 5 mm (16–18).
Figures 7-12 from: Singh N, Kirti JS, Ranjan R, Chandra K, Speidel W (2020) On the taxonomy of the genus Sacada Walker, 1862 from India, with descriptions of a new genus and two new species (Pyralinae, Pyralidae, Lepidoptera). ZooKeys 962: 139-163. https://doi.org/10.3897/zookeys.962.51194
Figures 7-12 Adults of Sacada spp. 7S. unilinealis Hampson (male), India 8S. unilinealis Hampson (male), holotype, Sikkim, India 9S. inordinata (Walker) (male), holotype, Darjeeling, India 10S. dzonguensis, sp. nov. (male), India. 11S. umtasorensis, sp. nov. (male), India 12S. pallescens Hampson (male), India. Scale bars: 5 mm (7, 10, 11); 12.7 mm (12).
Figures 33-40 from: Singh N, Kirti JS, Ranjan R, Chandra K, Speidel W (2020) On the taxonomy of the genus Sacada Walker, 1862 from India, with descriptions of a new genus and two new species (Pyralinae, Pyralidae, Lepidoptera). ZooKeys 962: 139-163. https://doi.org/10.3897/zookeys.962.51194
Figures 33-40 Male genitalia of Pseudosacada flexuosa (Snellen). 33 Ventral view 34 dorsal view 35 aedeagus 36 valva 37 uncus 38 gnathos 39 lateral process of uncus 40 enlarged view of transtilla processes.
Figures 1-6 from: Singh N, Kirti JS, Ranjan R, Chandra K, Speidel W (2020) On the taxonomy of the genus Sacada Walker, 1862 from India, with descriptions of a new genus and two new species (Pyralinae, Pyralidae, Lepidoptera). ZooKeys 962: 139-163. https://doi.org/10.3897/zookeys.962.51194
Figures 1-6 Adults of Sacada spp. 1S. sikkima (Moore) (male), India 2S. sikkima (Moore) (male), lectotype, Darjeeling, India 3S. constrictalis (Ragonot) (male), India 4, 5S. discinota (Moore) (male), India 6S. discinota (Moore) (male), lectotype, Darjeeling, India. Scale bars: 5 mm (1); 12.7 mm (3–5).
Figures 19-26 from: Singh N, Kirti JS, Ranjan R, Chandra K, Speidel W (2020) On the taxonomy of the genus Sacada Walker, 1862 from India, with descriptions of a new genus and two new species (Pyralinae, Pyralidae, Lepidoptera). ZooKeys 962: 139-163. https://doi.org/10.3897/zookeys.962.51194
Figures 19-26 Male genitalia of Sacada spp. 19, 20 Male genitalia of S. sikkima (Moore) 21, 22 male genitalia of S. constrictalis (Ragonot) 23, 24 male genitalia of S. discinota (Moore) 25, 26 male genitalia of S. unilinealis Hampson.
Figures 27-32 from: Singh N, Kirti JS, Ranjan R, Chandra K, Speidel W (2020) On the taxonomy of the genus Sacada Walker, 1862 from India, with descriptions of a new genus and two new species (Pyralinae, Pyralidae, Lepidoptera). ZooKeys 962: 139-163. https://doi.org/10.3897/zookeys.962.51194
Figures 27-32 Male genitalia of Sacada spp. 27, 28 Male genitalia of S. dzonguensis, sp. nov. 29, 30 male genitalia of S. umtasorensis, sp. nov. 31, 32 male genitalia of S. pallescens Hampson.
Figure 1 from: Martellos S, Bartolucci F, Conti F, Galasso G, Moro A, Pennesi R, Peruzzi L, Pittao E, Nimis PL (2020) FlorItaly – the portal to the Flora of Italy. PhytoKeys 156: 55-71. https://doi.org/10.3897/phytokeys.156.54023
Figure 1 Taxon page for Poa annua L. from FlorItaly [accessed on 18 June 2020]. The page lists taxon name, synonyms, distribution, also depicted in a distributional map, taxonomic position (in this case in the APG IV scheme), an image, links to external resources, Italian names, and a photo gallery.
Supplementary material 4 from: Chen W-H, Zhang Y-M, Guo S-W, Zhang Z-R, Chen L, Shui Y-M (2020) Reassessment of Bournea Oliver (Gesneriaceae) based on molecular and palynological evidence. In: Shui Y-M, Chen W-H, Ren M-X, Wen F, Hong X, Qiu Z-J, Wei Y-G, Kang M (Eds) Taxonomy of Gesneriaceae in China and Vietnam. PhytoKeys 157: 27-41. https://doi.org/10.3897/phytokeys.157.55254
Supporting materials
Supplementary material 2 from: Chen W-H, Zhang Y-M, Guo S-W, Zhang Z-R, Chen L, Shui Y-M (2020) Reassessment of Bournea Oliver (Gesneriaceae) based on molecular and palynological evidence. In: Shui Y-M, Chen W-H, Ren M-X, Wen F, Hong X, Qiu Z-J, Wei Y-G, Kang M (Eds) Taxonomy of Gesneriaceae in China and Vietnam. PhytoKeys 157: 27-41. https://doi.org/10.3897/phytokeys.157.55254
Figure S1
Figure 4 from: Chen W-H, Zhang Y-M, Guo S-W, Zhang Z-R, Chen L, Shui Y-M (2020) Reassessment of Bournea Oliver (Gesneriaceae) based on molecular and palynological evidence. In: Shui Y-M, Chen W-H, Ren M-X, Wen F, Hong X, Qiu Z-J, Wei Y-G, Kang M (Eds) Taxonomy of Gesneriaceae in China and Vietnam. PhytoKeys 157: 27-41. https://doi.org/10.3897/phytokeys.157.55254
Figure 4 The morphology of pollen grains of Bournea sinensis Oliv. (A–D) and B. leiophylla (W. T. Wang) W. T. Wang (E–H) by SEM. A polar view showing pollen grain with three equatorial, colporus apertures B equatorial view showing single free, prolate pollen grain C equatorial view show apertures and granular aperture membrane D detail showing verrucate tectum with granular E polar view showing pollen grain with three equatorial, colporus apertures F equatorial view showing single free, oblate pollen grain G equatorial view show apertures and granular aperture membrane H detail showing verrucate tectum with granular.
Figure 3 from: Chen W-H, Zhang Y-M, Guo S-W, Zhang Z-R, Chen L, Shui Y-M (2020) Reassessment of Bournea Oliver (Gesneriaceae) based on molecular and palynological evidence. In: Shui Y-M, Chen W-H, Ren M-X, Wen F, Hong X, Qiu Z-J, Wei Y-G, Kang M (Eds) Taxonomy of Gesneriaceae in China and Vietnam. PhytoKeys 157: 27-41. https://doi.org/10.3897/phytokeys.157.55254
Figure 3 The Bayes inference (BI) and Maximum likelihood (ML) tree inferred from six cp DNA markers (atpB-rbcL, ndhH-rps15-ycf1, rpl132, trnC-trnD, trnL-F, trnT-trnL) and ITS of the expanded genus Oreocharis s.l. in Gesneriaceae. Note 1) the red clade indicates the position of Bournea in phylogenetic trees; 2) the number of the node respectively indicates posterior probability values in BI and bootstrap values in ML, ※ indicates < 50%.
Figure 1 from: Chen W-H, Zhang Y-M, Guo S-W, Zhang Z-R, Chen L, Shui Y-M (2020) Reassessment of Bournea Oliver (Gesneriaceae) based on molecular and palynological evidence. In: Shui Y-M, Chen W-H, Ren M-X, Wen F, Hong X, Qiu Z-J, Wei Y-G, Kang M (Eds) Taxonomy of Gesneriaceae in China and Vietnam. PhytoKeys 157: 27-41. https://doi.org/10.3897/phytokeys.157.55254
Figure 1 The morphology of Bournea sinensis Oliv. (A–E) and B. leiophylla (W. T. Wang) W. T. Wang (F–J). A plant B inflorescence C calyx and disc D stigma E front view of corolla showing the anthers and the style and stamens F plant G inflorescence H pistil and disc I stigma J front view of corolla showing the anthers.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.