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Supplementary material 3 from: Chen W-H, Zhang Y-M, Guo S-W, Zhang Z-R, Chen L, Shui Y-M (2020) Reassessment of Bournea Oliver (Gesneriaceae) based on molecular and palynological evidence. In: Shui Y-M, Chen W-H, Ren M-X, Wen F, Hong X, Qiu Z-J, Wei Y-G, Kang M (Eds) Taxonomy of Gesneriaceae in China and Vietnam. PhytoKeys 157: 27-41. https://doi.org/10.3897/phytokeys.157.55254
Figure S2
Supplementary material 1 from: Chen W-H, Zhang Y-M, Guo S-W, Zhang Z-R, Chen L, Shui Y-M (2020) Reassessment of Bournea Oliver (Gesneriaceae) based on molecular and palynological evidence. In: Shui Y-M, Chen W-H, Ren M-X, Wen F, Hong X, Qiu Z-J, Wei Y-G, Kang M (Eds) Taxonomy of Gesneriaceae in China and Vietnam. PhytoKeys 157: 27-41. https://doi.org/10.3897/phytokeys.157.55254
Tables S1, S2
Figure 2 from: Chen W-H, Zhang Y-M, Guo S-W, Zhang Z-R, Chen L, Shui Y-M (2020) Reassessment of Bournea Oliver (Gesneriaceae) based on molecular and palynological evidence. In: Shui Y-M, Chen W-H, Ren M-X, Wen F, Hong X, Qiu Z-J, Wei Y-G, Kang M (Eds) Taxonomy of Gesneriaceae in China and Vietnam. PhytoKeys 157: 27-41. https://doi.org/10.3897/phytokeys.157.55254
Figure 2 The Bayes inference (BI) and Maximum likelihood (ML) tree inferred from six cp DNA markers (atpB-rbcL, ndhH-rps15-ycf1, rpl132, trnC-trnD, trnL-F, trnT-trnL) of the expanded genus Oreocharis s.l. in Gesneriaceae. Note 1) the red clade indicates the position of Bournea in phylogenetic trees; 2) the number of the node respectively indicates posterior probability values in BI and bootstrap values in ML, ※ indicates < 50%.
Figure 1 from: Qiu Z-J, Zhang J, Baskaran X-R, Hu J, Li Z-Y, Liu Z-Y (2020) Petrocosmea nanchuanensis (Gesneriaceae), a new species from Chongqing, China. In: Shui Y-M, Chen W-H, Ren M-X, Wen F, Hong X, Qiu Z-J, Wei Y-G, Kang M (Eds) Taxonomy of Gesneriaceae in China and Vietnam. PhytoKeys 157: 137-144. https://doi.org/10.3897/phytokeys.157.33625
Figure 1 Drawing of Petrocosmea nanchuanensis Z.Y. Liu, Z.Y. Li & Z.J. Qiu, sp. nov. A habit B stamens C dissected corolla D calyx and pistil.
Figure 2 from: Qiu Z-J, Zhang J, Baskaran X-R, Hu J, Li Z-Y, Liu Z-Y (2020) Petrocosmea nanchuanensis (Gesneriaceae), a new species from Chongqing, China. In: Shui Y-M, Chen W-H, Ren M-X, Wen F, Hong X, Qiu Z-J, Wei Y-G, Kang M (Eds) Taxonomy of Gesneriaceae in China and Vietnam. PhytoKeys 157: 137-144. https://doi.org/10.3897/phytokeys.157.33625
Figure 2 Petrocosmea nanchuanensis Z.Y. Liu, Z.Y. Li & Z.J. Qiu A habitat B flowering plants C flower, front view D flower, side view E flower, front view, showing pistil and anthers F hairs on abaxial leaves G stamens H hairs on the pistil.
Figure 3 from: Qiu Z-J, Zhang J, Baskaran X-R, Hu J, Li Z-Y, Liu Z-Y (2020) Petrocosmea nanchuanensis (Gesneriaceae), a new species from Chongqing, China. In: Shui Y-M, Chen W-H, Ren M-X, Wen F, Hong X, Qiu Z-J, Wei Y-G, Kang M (Eds) Taxonomy of Gesneriaceae in China and Vietnam. PhytoKeys 157: 137-144. https://doi.org/10.3897/phytokeys.157.33625
Figure 3 Drawing of the most parsimonious tree generated from six cpDNA and two nrDNA regions (partial & unpublished). Bootstrap values are shown above branches and Bayesian posterior probabilities are indicated below branches.
Figure 3 from: Zhang R-L, Li S, Maciejewski S, Wei Y-G (2020) Petrocodon rubiginosus, a new species of Gesneriaceae from Guangxi, China. In: Shui Y-M, Chen W-H, Ren M-X, Wen F, Hong X, Qiu Z-J, Wei Y-G, Kang M (Eds) Taxonomy of Gesneriaceae in China and Vietnam. PhytoKeys 157: 175-181. https://doi.org/10.3897/phytokeys.157.32270
Figure 3 The difference of indumentum between Petrocodon rubiginosus Y.G.Wei & R.L.Zhang, sp. nov. (A) and Pet. hechiensis (Y.G.Wei, Yan Liu & F.Wen) Y.G.Wei & Mich.Möller (B): densely curly rubiginous to ferruginous villous on surface of petiole (A–1), pedicel (A–2) and calyx lobes (C–1) and densely short glandular-pubescent and pubescent on surface of petiole (B–1), pedicel (B–2) and calyx lobes (C–2).
Figure 2 from: Zhang R-L, Li S, Maciejewski S, Wei Y-G (2020) Petrocodon rubiginosus, a new species of Gesneriaceae from Guangxi, China. In: Shui Y-M, Chen W-H, Ren M-X, Wen F, Hong X, Qiu Z-J, Wei Y-G, Kang M (Eds) Taxonomy of Gesneriaceae in China and Vietnam. PhytoKeys 157: 175-181. https://doi.org/10.3897/phytokeys.157.32270
Figure 2 Petrocodon rubiginosus Y.G.Wei & R.L.Zhang, sp. nov. (1) and its congener, Pet. hechiensis (Y.G.Wei, Yan Liu & F.Wen) Y.G.Wei & Mich.Möller (2) A adaxial surfaces of leaf blades and petioles of two species B abaxial surfaces of leaf blades and petioles of two species C indumentum of petioles D indumentum of main nerves on adaxial surface E cymes and flowers F indumentum of peduncles G indumentum of bracts and pedicels H abaxial and adaxial surfaces of bracts I corolla in frontal views J corolla in top views K corolla in lateral views L indumentum of abaxial surfaces of calyx lobes M stigma. Photographs by authors.
Figure 1 from: Zhang R-L, Li S, Maciejewski S, Wei Y-G (2020) Petrocodon rubiginosus, a new species of Gesneriaceae from Guangxi, China. In: Shui Y-M, Chen W-H, Ren M-X, Wen F, Hong X, Qiu Z-J, Wei Y-G, Kang M (Eds) Taxonomy of Gesneriaceae in China and Vietnam. PhytoKeys 157: 175-181. https://doi.org/10.3897/phytokeys.157.32270
Figure 1 Petrocodon rubiginosus Y.G.Wei & R.L.Zhang, sp. nov. A flowering plant in natural habitat (Jingxi, Guangxi, China) B flowering plant cultivated in GCCCC cyme D corolla in front view E corolla in lateral view and bud on cyme F indumentum of peduncle G flower in top view H flower in lateral view I flower in upward view J resolved flower for showing corolla, calyx lobes, pistil and pedicel K pistil and calyx lobes (adaxial & abaxial surfaces) L style and stigma. Photographs by authors.
Figure 3 from: Meraz-Álvarez R, Bautista-Martínez N, Illescas-Riquelme CP, González-Hernández H, Valdez-Carrasco JM, Savage J (2020) Identification of Delia spp. (Robineau-Desvoidy) (Diptera, Anthomyiidae) and its cruciferous hosts in Mexico. ZooKeys 964: 127-141. https://doi.org/10.3897/zookeys.964.53947
Figure 3 Phylogenetic tree (based on the K2P distance model) for 25 COI sequences (minimum 550 bpm, 0 bp ambiguous) of Delia specimens. The line includes species name, sample identification by BOLD, sex, and barcode index number (BIN).
Figure 2 from: Meraz-Álvarez R, Bautista-Martínez N, Illescas-Riquelme CP, González-Hernández H, Valdez-Carrasco JM, Savage J (2020) Identification of Delia spp. (Robineau-Desvoidy) (Diptera, Anthomyiidae) and its cruciferous hosts in Mexico. ZooKeys 964: 127-141. https://doi.org/10.3897/zookeys.964.53947
Figure 2 Male genitalia. a terminalia of Delia planipalpisb terminalia of D. platurac abdominal sternite V of D. planipalpisd abdominal sternite V of D. platura. Scale bars: 200 nm.
Figure 4 from: Meraz-Álvarez R, Bautista-Martínez N, Illescas-Riquelme CP, González-Hernández H, Valdez-Carrasco JM, Savage J (2020) Identification of Delia spp. (Robineau-Desvoidy) (Diptera, Anthomyiidae) and its cruciferous hosts in Mexico. ZooKeys 964: 127-141. https://doi.org/10.3897/zookeys.964.53947
Figure 4 Damage caused by Delia planipalpis and D. platura. a broccoli plants damaged by Delia spp. larvae b cabbage plant with yellow wilted basal leaves c main stem of a cabbage plant with galleries d cabbage plant with holes where larvae exited eDelia spp. larvae feeding superficially on the stem of a cabbage plant fDelia spp. pupa at the site where plant was extracted.
Figure 1 from: Meraz-Álvarez R, Bautista-Martínez N, Illescas-Riquelme CP, González-Hernández H, Valdez-Carrasco JM, Savage J (2020) Identification of Delia spp. (Robineau-Desvoidy) (Diptera, Anthomyiidae) and its cruciferous hosts in Mexico. ZooKeys 964: 127-141. https://doi.org/10.3897/zookeys.964.53947
Figure 1 a male Delia planipalpisb male Delia platurac female Delia planipalpisd female Delia platura. Scale bars: 1 mm.
Supplementary material 2 from: Laini A, Beermann AJ, Bolpagni R, Burgazzi G, Elbrecht V, Zizka VMA, Leese F, Viaroli P (2020) Exploring the potential of metabarcoding to disentangle macroinvertebrate community dynamics in intermittent streams. Metabarcoding and Metagenomics 4: e51433. https://doi.org/10.3897/mbmg.4.51433
Table S1, Figures S1–S5
Supplementary material 1 from: Laini A, Beermann AJ, Bolpagni R, Burgazzi G, Elbrecht V, Zizka VMA, Leese F, Viaroli P (2020) Exploring the potential of metabarcoding to disentangle macroinvertebrate community dynamics in intermittent streams. Metabarcoding and Metagenomics 4: e51433. https://doi.org/10.3897/mbmg.4.51433
Raw data
Figures 2-7 from: Abram PK, McPherson AE, Kula R, Hueppelsheuser T, Thiessen J, Perlman SJ, Curtis CI, Fraser JL, Tam J, Carrillo J, Gates M, Scheffer S, Lewis M, Buffington M (2020) New records of Leptopilina, Ganaspis, and Asobara species associated with Drosophila suzukii in North America, including detections of L. japonica and G. brasiliensis. Journal of Hymenoptera Research 78: 1-17. https://doi.org/10.3897/jhr.78.55026
Figures 2-7 Ganaspis brasiliensis (2, 4); Leptopilina japonica (3, 5); Pachycrepoideus vindemmiae (6); Asobara sp. (7).
Figure 1 from: Abram PK, McPherson AE, Kula R, Hueppelsheuser T, Thiessen J, Perlman SJ, Curtis CI, Fraser JL, Tam J, Carrillo J, Gates M, Scheffer S, Lewis M, Buffington M (2020) New records of Leptopilina, Ganaspis, and Asobara species associated with Drosophila suzukii in North America, including detections of L. japonica and G. brasiliensis. Journal of Hymenoptera Research 78: 1-17. https://doi.org/10.3897/jhr.78.55026
Figure 1 Map of sites where Leptopilina japonica (red circles), or both L. japonica and Ganaspis brasiliensis (green circles) were found in British Columbia, Canada in 2016 and 2019. The red box in the inset shows where the mapped area is situated in North America. Map tiles by Stamen Design, under CC BY 3.0. Data by OpenStreetMap, under ODbL.
Figure 1 from: Starr CK, Bhukal R, Ballah ST (2020) Observations of neotropical social wasps (Hymenoptera, Vespidae) preying on eggs and tadpoles of the frog Engystomops pustulosus (Amphibia, Leptodactylidae). Journal of Hymenoptera Research 78: 91-96. https://doi.org/10.3897/jhr.78.54409
Figure 1 Stages in the disintegration of Engystomops pustulosus foam nests. a Stage 1; fresh, domed above the water b Stage 2; distinctly flatter, but still coherent c Stage 3; very flat and losing coherence.
phyloregion: R package for biogeographic regionalization and spatial conservation
<ol> <li>Biogeographical regionalization is the classification of regions in terms of their biotas and is key to understanding biodiversity patterns across the world. Previously, it was only possible to perform analysis of biogeographic regionalization on small datasets, often using tools that are difficult to replicate.</li> <li>Here, we present phyloregion, a package for the analysis of biogeographic regionalization and spatial conservation in the R computing environment, tailored for mega phylogenies and macroecological datasets of ever-increasing size and complexity.</li> <li>Compared to available packages, phyloregion is three to four orders of magnitude faster and memory efficient for cluster analysis, determining optimal number of clusters, evolutionary distinctiveness of regions, as well as analysis of more standard conservation measures of phylogenetic diversity, phylogenetic endemism, and evolutionary distinctiveness and global endangerment.</li> <li>A case study for zoogeographic regionalization of 9574 species of squamate reptiles (amphisbaenians, lizards, and snakes) across the globe, reveals their evolutionary affinities using visualization tools that allow rapid identification of patterns and underlying processes with user-friendly colours–for example–indicating the levels of differentiation of the taxa in different regions.</li> <li>Ultimately, phyloregion would facilitate rapid biogeographic analyses that accommodates the ongoing mass-production of species occurrence records and phylogenetic datasets at any scale and for any taxonomic group into completely reproducible R workflows.</li> </ol>
Figure 1 from: Chan-Canche R, Ballina-Gómez H, Leirana-Alcocer J, Bordera S, González-Moreno A (2020) Sampling of parasitoid Hymenoptera: influence of the height on the ground. Journal of Hymenoptera Research 78: 19-31. https://doi.org/10.3897/jhr.78.54309
Figure 1 Malaise traps position at two different heights A location of sampling sites in Hacienda Yabucu B trap placement, one placed in the conventional way, at ground level, GMT: Ground Malaise trap and the other placed immediately above the first ones, leaving no space between them, RMT: Raised Malaise Trap.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.