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779
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ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
The aberrant epigenome of DNMT3B-mutated ICF1 patient iPSCs is amenable to correction, with the exception of a subset of regions with H3K4me3- and/or CTCF-based epigenetic memory (RNA-seq)
GEO Series GSE197923. Homo sapiens. 19 samples. Type: Expression profiling by high throughput sequencing.
CTCF-RNA interactions orchestrate cell-specific chromatin loop organization [MicroC]
GEO Series GSE287376. Mus musculus. 14 samples. Type: Other.
Genome-wide maps of HPSH-CTCF binding in prim-5 stage zebrafish embryos
GEO Series GSE133437. Danio rerio. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Analysis of three-dimensional enhancer network regulated by CTCF in CD4+ T cells [PRO-seq]
GEO Series GSE243711. Mus musculus. 7 samples. Type: Other.
H3K9 trimethylation in active compartments optimizes stimulus-regulated transcription by restricting usage of CTCF sites in SINE-B2 repeats
GEO Series GSE189975. Mus musculus. 80 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
CTCF and CohesinSA-1 Mark Active Promoters and Boundaries of Repressive Chromatin Domains in Primary Human Erythroid Cells [RNA-Seq]
GEO Series GSE67892. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Constitutively bound CTCF sites maintain 3D chromatin architecture and long-range epigenetically regulated domains
GEO Series GSE125641. Homo sapiens. 40 samples. Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing; Other.
Dissecting developmental disorders caused by CTCF mutation at R567
GEO Series GSE214692. Mus musculus; Homo sapiens. 71 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing.
DNA methylation insulates exons from CTCF loops with nuclear speckles (CUT&TAG)
GEO Series GSE217753. Homo sapiens. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF-mediated topological boundaries during development foster appropriate gene regulation
GEO Series GSE83124. Mus musculus. 4 samples. Type: Other.
Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection [II]
GEO Series GSE136328. Mus musculus. 44 samples. Type: Other.
Histone H3K27 acetylation at CTCF sites mediates cell type-specific chromatin interactions between them
GEO Series GSE147037. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF is a Barrier for Totipotent-like Reprogramming [ChIPseq]
GEO Series GSE172073. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF ChIP-seq of WT and RNA-seq of WT and CTCF cko mouse
GEO Series GSE84176. Mus musculus. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
CTCF-dependent insulation of Hoxb13 and the heterochronic control of tail length [ChIPM]
GEO Series GSE272382. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Third-party reanalysis.
Systematic assessment of ISWI subunits reveals that NURF creates local accessibility for CTCF [ChIP-seq]
GEO Series GSE234273. Mus musculus. 32 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF translates IL-2- and αKG-sensitive metabolic changes in T cells into context-dependent differentiation gene programs [ATAC-Seq]
GEO Series GSE89038. Mus musculus. 6 samples. Type: Other.
BRD2 cooperates with CTCF to enforce transcriptional and architectural boundaries
GEO Series GSE95476. Mus musculus. 6 samples. Type: Other.
A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus [HiC_MEF]
GEO Series GSE104367. Mus musculus. 37 samples. Type: Other.
ChIP-seq analysis of cas9, HA, H3K4me, H3K4me2, H3K9me3, H3K27ac, CTCF, GATA1 and TAL1 in HS2 enhancer perturbed K562 cells or other leukemia cell lines
GEO Series GSE132212. Homo sapiens. 99 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.