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799 results for “abundance data”
Data from: Seasonal difference in temporal transferability of an ecological model: near-term predictions of lemming outbreak abundances
Ecological models have been criticized for a lack of validation of their temporal transferability. Here we answer this call by investigating the temporal transferability of a dynamic state-space model developed to estimate season-dependent biotic and climatic predictors of spatial variability in outbreak abundance of the Norwegian lemming. Modelled summer and winter dynamics parametrized by spatial trapping data from one cyclic outbreak were validated with data from a subsequent outbreak. There was a distinct difference in model transferability between seasons. Summer dynamics had good temporal transferability, displaying ecological models' potential to be temporally transferable. However, the winter dynamics transferred poorly. This discrepancy is likely due to a temporal inconsistency in the ability of the climate predictor (i.e. elevation) to reflect the winter conditions affecting lemmings both directly and indirectly. We conclude that there is an urgent need for data and models that yield better predictions of winter processes, in particular in face of the expected rapid climate change in the Arctic.
Data from: Fishing pressure impacts the abundance gradient of European lobsters across the borders of a newly established marine protected area
Marine protected areas (MPAs) are considered as viable fisheries management tools due to their potential benefits of adult spillover and recruitment subsidy to nearby fisheries. However, before-after-control-impact (BACI) studies that explore the biological and fishery effects of MPAs to surrounding fisheries are scarce. We present results from a fine-scale spatial gradient study conducted before and after the implementation of a 5km2 lobster MPA in southern Norway. A significant non-linear response in lobster abundance, estimated as catch-per-unit-effort (CPUE) from experimental fishing, was detected within two years of protection. After 4 years, CPUE values inside the MPA had increased by a magnitude of 2.6 compared to before-protection values. CPUE showed a significant non-linear decline from the center of the MPA, with a depression immediately outside the border and a plateau in fished areas. Overall fishing pressure almost doubled over the course of the study. The highest increase in fishing pressure (by a magnitude of 3) was recorded within 1 km of the MPA border, providing a plausible cause for the depression in CPUE. Taken together, these results demonstrate the need to regulate fishing pressure in surrounding areas when MPAs are implemented as fishery management tools.
Data from: Environmental DNA (eDNA) detects the invasive rusty crayfish (Orconectes rusticus) at low abundances
Early detection is invaluable for the cost-effective control and eradication of invasive species, yet many traditional sampling techniques are ineffective at the low population abundances found at the onset of the invasion process. Environmental DNA (eDNA) is a promising and sensitive tool for early detection of some invasive species, but its efficacy has not yet been evaluated for many taxonomic groups and habitat types. We evaluated the ability of eDNA to detect the invasive rusty crayfish Orconectes rusticus, and to reflect patterns of its relative abundance, in upper Midwest, USA inland lakes. We paired conventional baited trapping as a measure of crayfish relative abundance with water samples for eDNA, which were analysed in the laboratory with a qPCR assay. We modelled detection probability for O. rusticus eDNA using relative abundance and site characteristics as covariates, and also tested the relationship between eDNA copy number and O. rusticus relative abundance. We detected O. rusticus eDNA in all lakes where this species was collected by trapping, down to low relative abundances, as well as in two lakes where trap catch was zero. Detection probability of O. rusticus eDNA was well-predicted by relative abundance of this species and lake water clarity. However there was poor correspondence between eDNA copy number and O. rusticus relative abundance estimated by trap catches. Synthesis and applications. Our study demonstrates a field and laboratory protocol for eDNA monitoring of crayfish invasions, with results of statistical models that provide guidance of sampling effort and detection probabilities for researchers in other regions and systems. We propose eDNA be included as a tool in surveillance for invasive or imperilled crayfishes and other benthic arthropods.
Data from: Exotic invasive plants increase productivity, abundance of ammonia-oxidizing bacteria, and nitrogen availability in intermountain grasslands
1. Exotic plant invasion is often associated with dramatic increases in above-ground net primary productivity and soil nitrogen. However, most evidence for these increases comes from correlative studies of single species, leaving open the question of whether invasive plants drive these processes and if they are consistent among invaders. 2. We combined field surveys and measurements within experimental plantings to examine how plant productivity, soil nitrogen, and the abundance of ammonia-oxidizing bacteria (AOB) change in response to invasions by four exotic species. 3. The relationship between plant productivity and soil nitrate differed among native and invasive species, suggesting a fundamental disparity in the effects of natives and invaders on ecosystem processes. In field surveys, dense patches of all invasive species had higher abundances of AOB than native-dominated sites. Three of the four invasive species had higher productivity, soil nitrate concentrations, and rates of potential nitrification as compared to nearby native-dominated communities. In our experimental plantings we found that two invasive species drove increases in soil nitrate and one invader caused increased productivity after a single season. 4. Synthesis:Our results highlight the importance of the N-cycling soil microbial community in how exotic invasive plants alter ecosystem function and show that shifts in function can occur rapidly.
Data from: Local and global abundance associated with extinction risk in late Paleozoic and early Mesozoic gastropods
Ecological theory predicts an inverse association between population size and extinction risk, but most previous paleontological studies have not confirmed this relationship. The reasons for this discrepancy between theory and observation remain poorly understood. In this study, we compiled a global database of gastropod occurrences and collection-level abundances spanning the Early Permian through Early Jurassic (Pliensbachian). Globally, the database contains 5469 occurrences of 496 genera and 2156 species from 839 localities. Within the database, 30 collections distributed across 7 stages contain at least 75 specimens and 10 genera – our minimum criteria for within-collection analysis of extinction selectivity. We use logistic regression analysis to assess the relationship between abundance and extinction risk using global and local measures of population size and stage-level extinction patterns in Early Permian through Early Jurassic marine gastropods. We find that global genus occurrence frequency is inversely associated with extinction risk (i.e., positively associated with survival) in 15 of 16 stages examined, statistically significantly so in 6 stages. Although correlation between geographic range and occurrence frequency may account for some of this association, results from multivariable regression analysis suggest that the association between occurrence frequency and extinction risk is largely independent of geographic range. Within local assemblages, abundance (number of individuals) is also inversely associated with extinction risk. The strength of association is consistent across time and modes of fossil preservation. Effect strength is poorly constrained, particularly in analyses of local collections. In addition to limited power due to small sample size, this poor constraint may result from confounding by ecological variables not controlled for in the analyses, by taphonomic or collection biases, or from non-monotonic relationships between abundance and extinction risk. Two factors are likely to account for the difference between our results and those of most previous studies. First, many previous studies focused on the end-Cretaceous mass extinction event; the extent to which these results can be generalized to other intervals remains unclear. Second, previous findings of non-selective extinction could result from insufficient statistical power rather than the absence of an underlying effect because non-selective extinction is generally used as the null hypothesis for statistical convenience. Survivorship patterns in late Paleozoic and early Mesozoic gastropods suggest that abundance has been a more important influence on extinction risk through the Phanerozoic than previously appreciated.
Data from: Community- weighted mean plant traits predict small scale distribution of insect root herbivore abundance
Small scale distribution of insect root herbivores may promote plant species diversity by creating patches of different herbivore pressure. However, determinants of small scale distribution of insect root herbivores, and impact of land use intensity on their small scale distribution are largely unknown. We sampled insect root herbivores and measured vegetation parameters and soil water content along transects in grasslands of different management intensity in three regions in Germany. We calculated community-weighted mean plant traits to test whether the functional plant community composition determines the small scale distribution of insect root herbivores. To analyze spatial patterns in plant species and trait composition and insect root herbivore abundance we computed Mantel correlograms. Insect root herbivores mainly comprised click beetle (Coleoptera, Elateridae) larvae (43%) in the investigated grasslands. Total insect root herbivore numbers were positively related to community-weighted mean traits indicating high plant growth rates and biomass (specific leaf area, reproductive- and vegetative plant height), and negatively related to plant traits indicating poor tissue quality (leaf C/N ratio). Generalist Elaterid larvae, when analyzed independently, were also positively related to high plant growth rates and furthermore to root dry mass, but were not related to tissue quality. Insect root herbivore numbers were not related to plant cover, plant species richness and soil water content. Plant species composition and to a lesser extent plant trait composition displayed spatial autocorrelation, which was not influenced by land use intensity. Insect root herbivore abundance was not spatially autocorrelated. We conclude that in semi-natural grasslands with a high share of generalist insect root herbivores, insect root herbivores affiliate with large, fast growing plants, presumably because of availability of high quantities of food. Affiliation of insect root herbivores with large, fast growing plants may counteract dominance of those species, thus promoting plant diversity.
Data from: The interplay among acorn abundance and rodent behavior drives the spatial pattern of seedling recruitment in mature Mediterranean oak forests
The patterns of seedling recruitment in animal-dispersed plants result from the interactions among environmental and behavioral variables. However, we know little on the contribution and combined effect of both kinds of variables. We designed a field study to assess the interplay between environment (vegetation structure, seed abundance, rodent abundance) and behavior (seed dispersal and predation by rodents, and rooting by wild boars), and their contribution to the spatial patterns of seedling recruitment in a Mediterranean mixed-oak forest. In a spatially explicit design, we monitored intensively all environmental and behavioral variables in fixed points at a small spatial scale from autumn to spring, as well as seedling emergence and survival. Our results revealed that the spatial patterns of seedling emergence were strongly related to acorn availability on the ground, but not by a facilitationeffect of vegetation cover. Rodents changed seed shadows generated by mother trees by dispersing most seeds from shrubby to open areas, but the spatial patterns of acorn dispersal/predation had no direct effect on recruitment. By contrast, rodents had a strong impact on recruitment as pilferers of cached seeds. Rooting by wild boars also reduced recruitment by reducing seed abundance, but also by changing rodent's behavior towards higher consumption of acorns in situ. Hence, seed abundance and the foraging behavior of scatter-hoarding rodents and wild boars are driving the spatial patterns of seedling recruitment in this mature oak forest, rather than vegetation features. The contribution of vegetation to seedling recruitment (e.g. facilitation by shrubs) may be context dependent, having a little role in closed forests, or being overridden by directed seed dispersal from shrubby to open areas. We warn about the need of using broad approaches that consider the combined action of environment and behavior to improve our knowledge on the dynamics of natural regeneration in forests.
Data from: Rapid plastic breeding response to rain matches peak prey abundance in a tropical savannah bird
1. Changes in climate are shifting the timing of life cycle events in the natural world. Compared to northern-temperate areas, these effects are relatively poorly understood in tropical and southern regions, where there is limited information on how timing of breeding and food availability are affected by climatic factors, and where patterns of breeding activity are more unpredictable within and between years. 2. Combining a new statistical modelling approach with 5 years of continuous individual-based monitoring of a monsoonal tropical insectivorous bird, we quantified (i) the proximate climatic drivers at two trophic levels: timing of breeding and abundance of arthropod prey; (ii) the effect of climate variation on reproductive output and (iii) the role of individual plasticity. 3. Rainfall was identified as the main determinant of phenology at both trophic levels. Throughout the year, likelihood of egg laying increased very rapidly in response to even small amounts of rain during the preceding 0-3 weeks. Adult body mass and male sperm storage also increased rapidly after rain, suggesting high breeding preparedness. Additionally, females were flexible, since they were more likely to nest if their previous attempt was longer ago and unsuccessful. Arthropod abundance also increased after rainfall, but more slowly, with a peak around 10 weeks. Therefore, the peak food availability coincided with the presence of dependent fledglings. 4. Fitness benefits of nesting after more rain appeared to be linked to offspring quantity rather than quality: nest attempts following higher rainfall produced larger clutches, but showed no improvement in nestling mass or relative fledging success. The response of clutch size to rainfall was plastic, since repeated sampling showed that individual females laid larger clutches after more rain, possibly mediated by improved body mass. 5. Rapid, individually flexible breeding in response to rainfall and slower increase in arthropod abundance also as a response to rainfall, might buffer insectivorous species living in tropical seasonal environments from climate-change induced phenological trophic mismatches.
Data from: Strong population structure deduced from genetics, otolith chemistry and parasite abundances explains vulnerability to localised fishery collapse in a large Sciaenid fish, Protonibea diacanthus
As pressure on coastal marine resources is increasing globally, the need to quantitatively assess vulnerable fish stocks is crucial in order to avoid the ecological consequences of stock depletions. Species of Sciaenidae (croakers, drums) are important components of tropical and temperate fisheries and are especially vulnerable to exploitation. The black-spotted croaker, Protonibea diacanthus, is the only large sciaenid in coastal waters of northern Australia where it is targeted by commercial, recreational and indigenous fishers due to its food value and predictable aggregating behaviour. Localised declines in the abundance of this species have been observed, highlighting the urgent requirement by managers for information on fine and broad-scale population connectivity. This study examined the population structure of P. diacanthus across northwestern Australia using three complementary methods: genetic variation in microsatellite markers, otolith elemental composition and parasite assemblage composition. The genetic analyses demonstrated that there were at least five genetically distinct populations across the study region, with gene flow most likely restricted by inshore biogeographic barriers such as the Dampier Peninsula. The otolith chemistry and parasite analyses also revealed strong spatial variation among locations within broad-scale regions, suggesting fine-scale location fidelity within the lifetimes of individual fish. The complementarity of the three techniques elucidated patterns of connectivity over a range of spatial and temporal scales. We conclude that fisheries stock assessments and management are required at fine scales (100's km) to account for the restricted exchange among populations (stocks) and to prevent localised extirpations of this species. Realistic management arrangements may involve the successive closure and opening of fishing areas to reduce fishing pressure.
Data from: Proxies in practice: calibration and validation of multiple indices of animal abundance
The abundance of individuals in a population is a fundamental metric in basic and applied ecology, but sampling protocols yielding precise and unbiased estimates of abundance are often cost prohibitive. Proxies of abundance are therefore common, but require calibration and validation. There are many ways to calibrate a proxy, and it is not obvious which will perform best. We use data from eight populations of Chinook salmon (Oncorhynchus tshawytscha) on the Oregon coast where multiple proxies of abundance were obtained contemporaneously with independent mark-recapture estimates. We combined multiple proxy values associated with a single level of abundance into a univariate index and then calibrated that index to mark-recapture estimates using several different techniques. We tested our calibration methods using leave-one-out cross validation and simulation. Our cross-validation analysis did not definitively identify a single best calibration technique for all populations, but we could identify consistently inferior approaches. The simulations suggested that incorporating the known mark-recapture uncertainty into the calibration technique added bias and imprecision. Cross validation techniques should be used to test multiple methods of calibrating multiple proxies to an estimate of abundance. Critical uncertainties with the application of calibrated proxies still exist, and cost-benefit analysis should be performed to help identify optimal monitoring designs.
Data from: Phylogenetic structure and host abundance drive disease pressure in communities
Pathogens play an important part in shaping the structure and dynamics of natural communities, because species are not affected by them equally. A shared goal of ecology and epidemiology is to predict when a species is most vulnerable to disease. A leading hypothesis asserts that the impact of disease should increase with host abundance, producing a 'rare-species advantage. However, the impact of a pathogen may be decoupled from host abundance, because most pathogens infect more than one species, leading to pathogen spillover onto closely related species. Here we show that the phylogenetic and ecological structure of the surrounding community can be important predictors of disease pressure. We found that the amount of tissue lost to disease increased with the relative abundance of a species across a grassland plant community, and that this rare-species advantage had an additional phylogenetic component: disease pressure was stronger on species with many close relatives. We used a global model of pathogen sharing as a function of relatedness between hosts, which provided a robust predictor of relative disease pressure at the local scale. In our grassland, the total amount of disease was most accurately explained not by the abundance of the focal host alone, but by the abundance of all species in the community weighted by their phylogenetic distance to the host. Furthermore, the model strongly predicted observed disease pressure for 44 novel host species we introduced experimentally to our study site, providing evidence for a mechanism to explain why phylogenetically rare species are more likely to become invasive when introduced. Our results demonstrate how the phylogenetic and ecological structure of communities can have a key role in disease dynamics, with implications for the maintenance of biodiversity, biotic resistance against introduced weeds, and the success of managed plants in agriculture and forestry.
Data from: Territory size decreases minimally with increasing food abundance in stream salmonids: implications for population regulation
How the local density of territorial animals responds to changes in food abundance will depend on the flexibility of territory size. Quantitative estimates of territory size over a broad range of food abundance are relatively rare because of the difficulty of measuring food abundance in the wild. Stream salmonids are an ideal model system for investigating flexibility in territory size, because food abundance can be quantified in the field and manipulated in the laboratory. We conducted a meta-analysis to test whether territory size decreases with increasing food abundance, and a mixed model analysis to test among three competing predictions: with increasing food abundance, territory size will be (1) fixed – the slope of a regression of log territory size vs. log food abundance = 0; (2) flexible and decreasing, as if individuals are defending a fixed amount of food – a slope = -1; and (3) initially compressible, but with an asymptotic minimum size – a slope between 0 and -1. We collected data from 16 studies that manipulated or measured food abundance while monitoring changes in territory size of young-of-the-year salmonids; 10 were experimental laboratory studies, whereas six were observational field studies. Overall, territory size decreased significantly with increasing food abundance; the weighted average correlation coefficient was -0.31. However, the estimated slope of the relationship between log territory size and log food abundance was only -0.23, significantly different from 0, but also significantly shallower than -1. Our estimated slope suggests that attempts to increase the density of territorial salmonids by increasing food abundance and reducing territory size will be inefficient; a 20-fold increase in food abundance would be required to double population density. Our analysis may also have implications for other species with a territorial mosaic social system – i.e. contiguous territories. In these social systems, social inertia will dampen any effects of changes in food abundance on the local density of settlers, compared to non-territorial species or those with non-contiguous territories.
Data from: Direct evidence that density-dependent regulation underpins the temporal stability of abundant species in a diverse animal community
To understand how ecosystems are structured and stabilized, and to identify when communities are at risk of damage or collapse, we need to know how the abundances of the taxa in the entire assemblage vary over ecologically meaningful timescales. Here, we present an analysis of species temporal variability within a single large vertebrate community. Using an exceptionally complete 33-year monthly time series following the dynamics of 81 species of fishes, we show that the most abundant species are least variable in terms of temporal biomass, because they are under density-dependent (negative feedback) regulation. At the other extreme, a relatively large number of low abundance transient species exhibit the greatest population variability. The high stability of the consistently common high abundance species—a result of density-dependence—is reflected in the observation that they consistently represent over 98% of total fish biomass. This leads to steady ecosystem nutrient and energy flux irrespective of the changes in species number and abundance among the large number of low abundance transient species. While the density-dependence of the core species ensures stability under the existing environmental regime, the pool of transient species may support long-term stability by replacing core species should environmental conditions change.
Data from: Spatial variation in anuran richness, diversity, and abundance across montane wetland habitat in Volcanoes National Park, Rwanda
The spatial distribution of species has long sparked interest among ecologists and biogeographers, increasingly so in studies of species responses to climate change. However, field studies on spatial patterns of distribution, useful to inform conservation actions at local scales, are still lacking for many regions, especially the tropics. We studied elevational trends and species‐area relationships among anurans in wetland habitats within Volcanoes National Park (VNP) in Rwanda, part of the biodiverse Albertine Rift region. In VNP, wetlands are key sites for anuran reproduction, and anurans are likely threatened by wetland desiccation which has occurred for the last few decades. Between 2012 and 2017, we sampled anuran communities in ten VNP wetlands located along an elevational gradient of c. 600 m (from 2,546 to 3,188 m a.s.l.) and found at least eight species, including at least two Albertine Rift Endemics. We show that species richness, diversity, and abundance likely decline with a decrease in wetland size and with an increase in elevation, though additional sampling (e.g., at night) might be needed to derive definite conclusions. Larger wetlands at lower elevations contained most species and individuals, which indicates the potential threat of wetland size reduction (through desiccation) for anuran conservation. However, we also found that wetlands differed in species composition and that some species (e.g., Sclerophrys kisoloensis) were likely restricted in distribution to only a few of the smaller wetlands—suggesting that the conservation of each individual wetland should be prioritized, regardless of size. We propose that all wetlands in VNP require additional conservation measures, which should be based on knowledge gathered through long‐term monitoring of anuran communities and research on drivers of wetland decline. Only such extended research will allow us to understand the response of anurans in VNP to threats such as climate change and wetland desiccation.
Data from: Local forage fish abundance influences foraging effort and offspring condition in an Endangered marine predator
1. Understanding the functional relationship between marine predators and their prey is vital to inform ecosystem-based management. However, collecting concurrent data on predator behaviour and their prey at relevant scales is challenging. Moreover, opportunities to study these relationships in the absence of industrial fishing are extremely rare. 2. We took advantage of an experimental fisheries closure to study how local prey abundance influences foraging success and chick condition of Endangered African penguins Spheniscus demersus in the Benguela Ecosystem. 3. We tracked 75 chick-provisioning penguins with GPS-time-depth devices, measured body condition of 569 chicks, quantified the diet of 83 breeding penguins and conducted 12 forage fish hydro-acoustic surveys within a 20 km radius of Robben Island, South Africa, over three years (2011–2013). Commercial fishing for the penguins' main prey, sardine Sardinops sagax and anchovy Engraulis encrasicolus, was prohibited within this 20 km radius during the study period. 4. Local forage fish abundance explained 60% of the variation in time spent diving for 14 penguins at sea within 2 days of a hydro-acoustic survey. Penguin foraging effort (time spent diving, number of wiggles per trip, number of foraging dives and the maximum distance travelled) increased and offspring body condition decreased as forage fish abundance declined. In addition, quantile regression revealed that variation in foraging effort increased as prey abundance around the colony declined. 5. Policy implications. Our results demonstrate that local forage fish abundance influences seabird foraging and offspring fitness. They also highlight the potential for offspring condition and the mean-variance relationship in foraging behaviour to act as leading indicators of poor prey abundance. By rapidly indicating periods where forage resources are scarce, these metrics could help limit seabird-fisheries competition and aid the implementation of dynamic ocean management.
Data from: Lincoln estimates of mallard (Anas platyrhynchos) abundance in North America
Estimates of range-wide abundance, harvest, and harvest rate are fundamental for sound inferences about the role of exploitation in the dynamics of free-ranging wildlife populations, but reliability of existing survey methods for abundance estimation is rarely assessed using alternative approaches. North American mallard populations have been surveyed each spring since 1955 using internationally coordinated aerial surveys, but population size can also be estimated with Lincoln's method using banding and harvest data. We estimated late summer population size of adult and juvenile male and female mallards in western, midcontinent, and eastern North America using Lincoln's method of dividing (i) total estimated harvest, H, by estimated harvest rate, h, calculated as (ii) direct band recovery rate, f, divided by the (iii) band reporting rate, p. Our goal was to compare estimates based on Lincoln's method with traditional estimates based on aerial surveys. Lincoln estimates of adult males and females alive in the period June–September were 4.0 (range: 2.5–5.9), 1.8 (range: 0.6–3.0), and 1.8 (range: 1.3–2.7) times larger than respective aerial survey estimates for the western, midcontinent, and eastern mallard populations, and the two population estimates were only modestly correlated with each other (western: r = 0.70, 1993–2011; midcontinent: r = 0.54, 1961–2011; eastern: r = 0.50, 1993–2011). Higher Lincoln estimates are predictable given that the geographic scope of inference from Lincoln estimates is the entire population range, whereas sampling frames for aerial surveys are incomplete. Although each estimation method has a number of important potential biases, our review suggests that underestimation of total population size by aerial surveys is the most likely explanation. In addition to providing measures of total abundance, Lincoln's method provides estimates of fecundity and population sex ratio and could be used in integrated population models to provide greater insights about population dynamics and management of North American mallards and most other harvested species.
Data from: Supportive breeding boosts natural population abundance with minimal negative impacts on fitness of a wild population of Chinook salmon
While supportive breeding programs strive to minimize negative genetic impacts to populations, case studies have found evidence for reduced fitness of artificially produced individuals when they reproduce in the wild. Pedigrees of two complete generations were tracked with molecular markers to investigate differences in reproductive success (RS) of wild and hatchery-reared Chinook salmon spawning in the natural environment to address questions regarding the demographic and genetic impacts of supplementation to a natural population. Results show a demographic boost to the population from supplementation. On average, fish taken into the hatchery produced 4.7 times more adult offspring, and 1.3 times more adult grand-offspring than naturally reproducing fish. Of the wild and hatchery fish that successfully reproduced, we found no significant differences in RS between any comparisons but hatchery-reared males typically had lower RS values than wild males. Mean relative reproductive success (RRS) for hatchery F1 females and males was 1.11 (p = 0.84) and 0.89 (p = 0.56), respectively. RRS of hatchery-reared fish (H) that mated in the wild with either hatchery or wild origin (W) fish were generally equivalent to WxW matings. Mean RRS of HxW and HxH matings was 1.07 (p = 0.92) and 0.94 (p = 0.95), respectively. We conclude that fish chosen for hatchery rearing did not have a detectable negative impact on the fitness of wild fish by mating with them for a single generation. Results suggest that supplementation following similar management practices (e.g., 100% local, wild-origin brood stock) can successfully boost population size with minimal impacts on the fitness of salmon in the wild.
Data from: Long-term dynamics of liana seedlings suggest decelerating increases in liana relative abundance over time
<ol> <li>Over the past decades, tropical forests have experienced both compositional and structural changes. In the Neotropics, researchers at multiple sites have observed significant increases in the abundance and biomass of lianas (i.e. woody vines) relative to trees. However, the role of dynamics at early life stages in contributing to increasing liana abundance remains unclear. </li> <li>We took advantage of a unique dataset on seedling dynamics over 16 years in ~20,000 1-m<sup>2</sup>plots in a tropical forest in Panama to examine temporal and spatial trends in liana and tree seedling abundance. </li> <li>We found that the relative abundance of liana seedlings increased across the study period, from 0.18 in 2001 to 0.24 in 2017. However, increases in liana seedling relative abundance appear to have leveled off in more recent years. The observed increases in liana relative abundance appear to be the result of both higher survival and higher recruitment rates of liana seedlings compared to tree seedlings.</li> <li>Increasing liana abundance in the seedling layer was not explained by annual variation in dry season length, total rainfall, or the proportion of area occupied by canopy gaps. In addition, liana seedlings did not exhibit a demographic advantage (i.e., higher recruitment or survival) over tree seedlings in dry habitats. </li> <li> <i>Synthesis:</i>Our results reveal that seedling communities experienced important compositional changes in the past, but liana seedling relative abundance may have stabilized in recent years. Longer-term monitoring is needed to determine whether tropical forests will continue to experience compositional changes that may alter forest structure and ecosystem function. </li> </ol>
Data from: Leopard distribution and abundance is unaffected by interference competition with lions
Competition can have profound impacts on the structure and function of ecological communities. Despite this, the population-level effects of intraguild competition on large carnivores remain largely unknown, due to a paucity of long-term studies that focus simultaneously on competing species. Here, we comprehensively examine competitive interactions, including their demographic consequences, between 2 top predators, lions Panthera leo and leopards P. pardus. We tested the hypothesis that lions, as the dominant competitor, limit the distribution and abundance of leopards, using dietary, spatial, and life-history data collected concurrently on the 2 species. Dietary overlap between lions and leopards was limited, with lions targeting large- to very large-sized prey and leopards small- to medium-sized prey. Leopards did not actively avoid lions, either predictively or reactively, except in riparian woodland where the likelihood of encountering lions was highest. Lions accounted for more than 20% of leopard mortality, but this appeared to be compensatory. Observed and modeled population growth was similar between the 2 species, with both exhibiting net emigration. Our findings suggest that lions do not suppress leopard populations or limit their distribution, at least in our study area. Adequate availability of suitably-sized prey apparently enabled resource partitioning between lions and leopards, facilitating their coexistence. The potential for competition increases in areas devoid of large prey and should be considered in recovery efforts for the 2 species. Our study provides novel empirical evidence that intraguild competition does not always have population-level consequences for subordinates, even if they suffer from strong inference competition with dominant competitors.
Data from: Optimising trait and source selection for explaining occurrence and abundance changes: a case study using British Butterflies
Functional traits that define the ecological role of an organism are increasingly being used to determine and predict responses to environmental change. Functional trait analyses of butterflies remain underexplored compared with other taxa, such as plants. Previous works using butterfly functional traits have not comprehensively addressed issues about the quality of trait data sets used and the relative predictive power of different trait types. We compare the consistency of trait descriptions between six widely used trait sources for the British butterfly fauna. We analysed consistency of trait sources using Fleiss's kappa and ICC. PCA was used to produce species ordinations, comparing outputs to examine which trait sets were better at explaining recent species range and abundance changes within the UK. There was a large range in congruence values for specific traits between sources. No single source can be relied upon to produce accurate trait information for British butterflies. Most trait sets are poor predictors of abundance and occurrence changes but are better at predicting current occurrence. An extensive trait set, supplementing biotope-related traits with explicit resource-based information recovers more informative ecological classifications and models than those primarily based on life-history traits or biotope descriptors. Smaller trait sets do, however, recover the specialist-generalist continuum. We conclude that analyses of distribution and abundance changes that rely on traits are highly dependent on trait source and trait type. For butterflies, traits that are based on measures of biotope occupancy should be avoided in explaining changes of abundance and distribution. Including trait information that describes their resource requirements is essential for such analyses.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.