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Figure 9. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073

Figure 9. - Neoempheriapuncticoxa Edwards, 1940 larval head capsule. Ventral view, without the mandible; e – eye; lb – labrum; lp – lateral plate; mp – maxillar papilla; mpl – medium plate; mx – maxilla; mxp – maxillary plate; of – occipital foramen; pmd – premandible.

Figure 8a. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073

Figure 8a. - Neoempheriapuncticoxa Edwards, 1940 larval head capsule.Figure 8a.Ventral view.Figure 8b.Ventral view. Ventral view.

Figure 5. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073

Figure 5. - Neoempheriapuncticoxa Edwards, 1940 adult. Male thorax; Ab – abdomen, anp – anepisternum, bas - basisternum, cxI-III – fore-, mid-, and hindcoxae, ha – haltere, ktp – katepisternum, ltg – laterotergite, anp – anepimeron, mep – mesepimeron, mes – metepisternum, mtg – mediotergite, pem – proepimeron, pes – proepisternum, pnt – pronotum, sc – scutum, sctl – scutellum.

Figure 1b. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073

Figure 1b. - Neoempheriapuncticoxa Edwards, 1940. Male adultFigure 1a.Dorsal view.Figure 1b.Ventral view. Ventral view.

Figure 7a. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073

Figure 7a. - Neoempheriapuncticoxa Edwards, 1940 larval head capsule.Figure 7a.Ventrolateral view.Figure 7b.Ventrolateral view. Ventrolateral view.

Figure 6. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073

Figure 6. - Neoempheriapuncticoxa Edwards, 1940 adult. Male terminalia, A dorsal view; gcap – gonocoxal apodeme, gcx – gonocoxite, gs – gonostylus, par – parameres, B lateral view of the gonostylus, C Dorsal view of tergite 9, D Dorsal view of the cercus and sternite 10.

Figure 3b. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073

Figure 3b. - Neoempheriapuncticoxa Edwards, 1940. Left wing.Figure 3a.Male.Figure 3b.Female. Female.

Figure 7b. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073

Figure 7b. - Neoempheriapuncticoxa Edwards, 1940 larval head capsule.Figure 7a.Ventrolateral view.Figure 7b.Ventrolateral view. Ventrolateral view.

Figure 1a. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073

Figure 1a. - Neoempheriapuncticoxa Edwards, 1940. Male adultFigure 1a.Dorsal view.Figure 1b.Ventral view. Dorsal view.

Figure 4. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073

Figure 4. - Neoempheriapuncticoxa Edwards, 1940 adult. Female terminalia; ce1 – first cercomere, ce2 – second cercomere, S7-10 – sternites 7-10, S9 genital fork, T7-10 – tergites 7-10.

opencc-by-4.0Dec 2016View details →

Dataset supplementing Lichtenberg et al. (2017) A global synthesis of the effects of diversified farming systems on arthropod diversity within fields and across agricultural landscapes. Global Change Biology

This dataset contains data and scripts that supplement the publication Lichtenberg et al. (2017) A global synthesis of the effects of diversified farming systems on arthropod diversity within fields and across agricultural landscapes. Global Change Biology. DOI: 10.1111/gcb.13714 Please cite the above article if you use any of the included data or code. Files are described in README.md.

opencc-by-4.0Aug 2017View details →

Data and script for: A marker of biological age explains individual variation in the strength of the adult stress response

Data and script for: A marker of biological age explains individual variation in the strength of the adult stress response. Comprises 2 CSV data files and one R script.

opencc-by-4.0Oct 2024View details →

BioTISR: a time-lapse biological image dataset for super-resolution microscopy

BioTISR is a biological image dataset for super-resolution microscopy, currently including 2D and 3D time-lapse image pairs of low-and-high resolution images of a variety of biology structures, aiming to provide a high-quality dataset of time-lapse biological SR images for the community to spark more developments of computational SR methods. At present, 2D dataset includes five specimens (clathrin-coated pits, lysosomes, outer mitochondrial membrane, microtubules, and F-actin) acquired with the GI/TIRF-SIM mode and nonlinear SIM mode of our Multi-SIM system, and 3D dataset includes three specimens (outer mitochondrial membrane, microtubules, and F-actin) acquired with 3D-SIM mode of the Multi-SIM system. For each type of specimen and each imaging modality, we acquired the raw data from at least 50 distinct regions-of-interest (ROI). For each ROI, we acquired two (3D data) or three (2D data) groups of N-phase × M-orientation × T-timepoint raw images with a constant exposure time but increasing the excitation light intensity, where (N, M, T) are (3, 3, 20) for TIRF-SIM and GI-SIM, (5, 5, 10) for nonlinear SIM, and (3, 5, 10) for 3D-SIM. Specific imaging conditions and scripts for reading MRC file are provided in Supplement Files. The BioTISR dataset is related to the following paper:<a href="https://www.nature.com/articles/s41587-025-02553-8#citeas">Qiao, C., Liu, S., Wang, Y. et al. A neural network for long-term super-resolution imaging of live cells with reliable confidence quantification. Nat Biotechnol (2025). https://doi.org/10.1038/s41587-025-02553-8</a>, which is an extension of our previously published <a href="https://doi.org/10.6084/m9.figshare.13264793.v9">BioSR dataset</a> (https://www.nature.com/articles/s41592-020-01048-5). Limited by quota, the original images uploaded in the current 3D dataset are wide-field images obtained after averaging 15 images, where (N, M, T) are (1, 1, 10). We will update them to raw SIM images after the quota is expanded. 2D dataset's url: <a href="https://doi.org/10.5281/zenodo.13843670" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.13843670</a> 3D dataset's urls: F-actin: WF input: <a href="https://doi.org/10.5281/zenodo.13843673">https://doi.org/10.5281/zenodo.13843673</a> Raw SIM input:<a href="https://doi.org/10.5281/zenodo.13994464" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.13994464</a> Microtubules: WF input: <a href="https://doi.org/10.5281/zenodo.13932988" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.13932988</a> Raw SIM input: <a href="https://doi.org/10.5281/zenodo.13989327" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.13989327</a> Mitochondria: WF input: <a href="https://doi.org/10.5281/zenodo.13843183" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.13843183</a> Raw SIM input: <a href="https://doi.org/10.5281/zenodo.14000502" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.14000502</a>   Update 2025.5.6 Add optical transfer function(OTF) of the microscopy system and the pixel size of each data to the supplementary files.

embargoedcc-by-4.0Oct 2024View details →

Dataset of physical, biological and chemical soil properties from 10 European long-term experiments

This dataset contains all measurements that were conducted within the Workpackage #2 of the SoilX Project (2022-2024). The data contains physical, chemical and biological soil parameters that were measured in ten European long-term field experiments, as well as soil management indicators calculated with the SoilManageR packager for R. Each data table contains different parameters, and they can be linked by the identifying columns (LTE, treatment, depth, block, replicate). Further information can be found in the ReadMe.txt. <pre> </pre>

opencc-by-4.0Nov 2023View details →

Basic list of international academic societies related to ecology and evolutionary biology.

List of international societies related to ecology, evolutionary biology or whole-organism biology. The list is based on the table from Lagisz et al. (2023) (top 16 societies), appended with additional societies from internet searches, personal communication and societies associated with journals listed in SCImago under Ecology, Evolution, Behaviour and Systematics category. Alternative society names (usually in a non-English language) are not shown. Abbreviated society names (non-unique) usually match the official abbreviated society names (English or nn-English), but if abbreviation was not found on the website it was made up from the English society name. In the "Extract" column, "Yes" indicates active societies with individual membership.

Fig. 6 in Stereoscopic light-microscopy in biology - A review

Fig. 6: Stereoscopic images of an amoeba with its irregular pseudopodia extending into all spatial directions (width: 150 µm, single images: Wim van Egmond).

Fig. 5 in Stereoscopic light-microscopy in biology - A review

Fig. 5: Stereo-pair showing the freshwater polyp Hydra sp. under the light-microscope (height: 0.5 mm).

Fig. 3 in Stereoscopic light-microscopy in biology - A review

Fig. 3: Stereoscopic photographs of the trumpet animal Stentor sp, representing a sessile freshwater organism with partly massive occurrence (height: 200 µm, single images: Wim van Egmond).

Fig. 1 in Stereoscopic light-microscopy in biology - A review

Fig. 1: "Classical" methods of stereo-pair production which are described in detail in the scientific literature: (a) horizontal displacement of the object, (b) rotation of the object, (c) variation of the focus plane (restricted to transparent objects).

Fig. 4 in Stereoscopic light-microscopy in biology - A review

Fig. 4: Stereoscopic images of a triangular diatom which represents a widely distributed unicellular organism of small freshwater habitats with sumptuous stock of submerged vegetation (width: 250 µm, single images: Wim van Egmond).