Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
481
datasets available to search
ShareScore release 0.9.0
Dataset results
481 results for “network modeling”
Nested oscillatory dynamics in cortical organoids model early human brain network development
GEO Series GSE130238. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Predictive Biophysical Neural Network Modeling of a Compendium of in vivo Transcription Factor DNA Binding Profiles for Escherichia coli
GEO Series GSE268698. Escherichia coli K-12; Escherichia coli str. K-12 substr. MG1655. 424 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Analysis of microRNA-transcript regulatory networks in the hippocampus of the BTBR mouse model of autism
GEO Series GSE303513. Mus musculus. 8 samples. Type: Non-coding RNA profiling by high throughput sequencing.
An ectopic network of transcription factors regulated by Hippo signaling drives growth and invasion of a malignant tumor model [larval imaginal discs]
GEO Series GSE71350. Drosophila melanogaster. 8 samples. Type: Expression profiling by high throughput sequencing.
A network model of the molecular organization of chromatin in Drosophila
GEO Series GSE36175. Drosophila melanogaster. 108 samples. Type: Genome variation profiling by genome tiling array.
Transcriptome-based network analysis reveals a spectrum model of human macrophage activation [Expression]
GEO Series GSE46903. Homo sapiens. 384 samples. Type: Expression profiling by array; Third-party reanalysis.
Transcriptome sequencing and microRNA–mRNA regulatory network construction in the lens from a Na2Se03-induced Sprague Dawley rat cataract model [miRNA]
GEO Series GSE226272. Rattus norvegicus. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Comparative Transcriptional Network Modeling of Three PPAR-α/γ Co-agonists Reveals Distinct Metabolic Gene Signatures in Primary Human Hepatocytes
GEO Series GSE33152. Homo sapiens. 54 samples. Type: Expression profiling by array.
Identification of circRNA and mRNA expression profiles and functional networks of vascular tissue in lipopolysaccharide-induced rat septic shock model [circRNA]
GEO Series GSE147772. Rattus norvegicus. 10 samples. Type: Non-coding RNA profiling by array.
Discovering miRNA regulatory networks in Holt-Oram Syndrome using a Zebrafish model [array]
GEO Series GSE64426. Danio rerio. 10 samples. Type: Expression profiling by array.
Cellular Communication Networks in Fibrosis: Single-nucleus Transcriptomic Insights from the MAFLD Pig Model
GEO Series GSE249237. Sus scrofa. 2 samples. Type: Expression profiling by high throughput sequencing.
Hippocampal gene network analysis to determine the effects of coral calcium hydride in an experimental model of accelerated senescence
GEO Series GSE31606. Mus musculus. 16 samples. Type: Expression profiling by array.
Network Understanding of SNAIL inhibitor induced perturbations in EMT models
GEO Series GSE44397. Homo sapiens. 8 samples. Type: Expression profiling by array.
LASSIM -a network inference toolbox for genome-wide mechanistic modeling
GEO Series GSE60683. Homo sapiens. 70 samples. Type: Expression profiling by array.
An ectopic network of transcription factors regulated by Hippo signaling drives growth and invasion of a malignant tumor model [larval imaginal discs (eye, wing and leg)]
GEO Series GSE81272. Drosophila melanogaster. 27 samples. Type: Expression profiling by high throughput sequencing.
Single Cell Transcriptomics Reveals Dysregulated Cellular and Molecular Networks in a Fragile X Syndrome Model
GEO Series GSE147191. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Convergent abnormalities in striatal gene networks in human cocaine use disorder and mouse cocaine administration models
GEO Series GSE214267. Homo sapiens. 89 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic and Epigenomic Profiling of MYADM and RhoA Regulatory Networks in Metastatic Cancer Models
GEO Series GSE297013. Homo sapiens; Mus musculus. 52 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Identification of circRNA and mRNA expression profiles and functional networks of vascular tissue in lipopolysaccharide-induced rat septic shock model [mRNA]
GEO Series GSE147774. Rattus norvegicus. 10 samples. Type: Expression profiling by array.
Model-driven mapping of transcriptional networks reveals the circuitry and dynamics of virulence regulation
GEO Series GSE60398. Cryptococcus neoformans. 320 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.