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Figure 1 in Ontogeny of South African intertidal oribatid mite species (Acari, Oribatida, Ameronothroidea) and supplements to adult morphology.
Figure 1 Fortuynia elamellata micromorpha Marshall & Pugh, 2002, Sheffield Beach. Adult. A. dorsal view (legs omitted), B. ventral view (only trochanter IV shown), C. lateral view (legs and epimeral setae omitted).
Figure 5 Selenoribates divergens Pfingstl, 2015. Adult. A in Ontogeny of South African intertidal oribatid mite species (Acari, Oribatida, Ameronothroidea) and supplements to adult morphology.
Figure 5 Selenoribates divergens Pfingstl, 2015. Adult. A. dorsal view (legs omitted), B. ventral view (legs omitted), C. lateral view (legs and ventral setae omitted).
Figure 4 in Ontogeny of South African intertidal oribatid mite species (Acari, Oribatida, Ameronothroidea) and supplements to adult morphology.
Figure 4 Fortuynia elamellata micromorpha Marshall & Pugh, 2002, Sheffield Beach, A. deutonymph, dorsal view, B. deutonymph, ventral view, C. tritonymph, dorsal view, D. tritonymph, ventral view.
Figure 2 in Ontogeny of South African intertidal oribatid mite species (Acari, Oribatida, Ameronothroidea) and supplements to adult morphology.
Figure 2 Fortuynia elamellata micromorpha Marshall & Pugh, 2002, Sheffield Beach. Adult legs A. leg I, right, paraxial view, B. leg II, right, paraxial view, C. leg III, left, paraxial view, D. leg IV, left, antiaxial view, E. chelicera.
Integrated single-cell profiling dissects cell-state-specific enhancer landscapes of human tumor-infiltrating CD8+ T cells_Supplemental_Data
<p>Processed Datasets for:</p> <p>EGA Study ID: EGAS00001006141</p> <p>EGA Dataset ID: EGAD00001008662</p> <p> </p> <p>Find processed files and arrow files</p> <p> </p> <p>Abstract:</p> <p>Despite extensive studies on the chromatin landscape of exhausted T cells, the transcriptional wiring underlying the heterogeneous functional and dysfunctional states of human tumor-infiltrating lymphocytes (TILs) is incompletely understood. Here, we identify gene-regulatory landscapes in a wide breadth of functional and dysfunctional CD8<sup>+</sup> TIL states covering four cancer entities using single-cell chromatin profiling. We map enhancer-promoter interactions in human TILs by integrating single-cell chromatin accessibility with single-cell RNA-seq data from tumor-entity-matching samples and prioritize cell-state-specific genes by super-enhancer analysis. Besides revealing entity-specific chromatin remodeling in exhausted TILs, our analyses identify a common chromatin trajectory to TIL dysfunction and determine key enhancers, transcriptional regulators, and deregulated genes involved in this process. Finally, we validate enhancer regulation at immunotherapeutically relevant loci by targeting non-coding regulatory elements with potent CRISPR activators and repressors. In summary, our study provides a framework for understanding and manipulating cell-state-specific gene-regulatory cues from human tumor-infiltrating lymphocytes.</p>
Supplements for "Solvent Accessibility Promotes Rotamer Errors During Protein Modelling with Major Side-Chain Prediction Programs"
<p><strong>Supplements for "Solvent Accessibility Promotes Rotamer Errors During Protein Modelling with Major Side-Chain Prediction Programs"</strong></p> <p>This supplement includes the following files:</p> <ul> <li>Main_v02.R --- Script in R language to process files (in "PDBs.zip") and produce the dataset ("Dataset_v02.csv")</li> <li>PDBs.zip --- PDB files include filtered structures processed by three programs</li> <li>Dataset_v02.csv --- final filtered version of dataset produced in R language (by "Main_v02.R"). </li> <li>Dataset key.txt --- key to column names in Dataset_v02.csv </li> </ul> <p>The article featuring this dataset is published in:</p> <p>Journal: Journal of Chemical Information and Modeling<br>Title: "Solvent Accessibility Promotes Rotamer Errors During Protein Modelling with Major Side-Chain Prediction Programs"<br>Author(s): Hameduh, Tareq; Mokry, Michal ; Miller, Andrew ; Heger, Zbynek; Haddad, Yazan</p> <p><a href="https://emea01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fpubs.acs.org%2Fdoi%2F10.1021%2Facs.jcim.3c00134&data=05%7C01%7C%7C4876a5c33e5f4bd8daf008db7e55a28d%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C638242678496577396%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=NE%2F0dYvc4m5%2B8T0YQtqxY21yk1pA9ZpiADqzx3vEJ4Q%3D&reserved=0">https://pubs.acs.org/doi/10.1021/acs.jcim.3c00134</a></p> <p> </p>
Supplemental data for: A bibliometric assessment of the incidence of amyloid-Eszett (Aß), a false positive of amyloid-beta (Aβ), in the neurodegenerative disease literature
<p>One claimed reason for the development of Alzheimer’s disease (AD), a prominent neurodegenerative disease, is the extracellular aggregation of amyloid-beta (Aβ). A linguistic or formatting error has resulted in the misrepresentation of the Greek letter β with the German letter Eszett (ß), resulting in the formation of a non-existent compound, amyloid-Eszett (Aß). These datasets offer a quantified appreciation of the AD-related literature, carrying a mention of this false positive in the title, abstract and keywords of papers indexed in the Web of Science Core Collection and Scopus. Also, as a curiosity given the popularity of this large language model, we asked the questions to ChatGPT. This AI chatbot developed by OpenAI was able to recognize Eszett as a linguistic or typographic error, within this context, recognizing Aß and Aβ as equals. This erroneous substitution of a Greek letter (in Aβ) by a German one (Aß), despite giving a non-existent compound, will likely not change the underlying scientific conclusions of the affected papers, although errata might be useful to enlighten others, including metadata managers and journal copyeditors, so as not to repeat the same mistake.</p>
Supplemental Tables that will be submitted with Hydrothermal Seepage of Altered Crustal Formation Water Seaward of the Middle America Trench, Offshore Costa Rica
<p>This spreadsheet will be submitted to JGR Solid Earth with a manuscrpt titled "Hydrothermal Seepage of Altered Crustal Formation Water Seaward of the Middle America Trench, Offshore Costa Rica" by Parsons et al. Keywords include Ridge flank, hydrothermal, Middle American Trench, hydrogeology, formation water, and pore water. Three short highlights include:</p> <p>Pore water chemical profiles reveal sediment diagenesis and seepage speeds up to 1.7 cm yr<sup>-1</sup> resulting in a net flux of 0.1 L s<sup>-1</sup>.</p> <p>Crustal formation water is warm (~75ºC) and chemically altered, stemming from water-basalt reactions and diffusive exchange with pore water.</p> <p>This ridge-flank hydrothermal system is not hydrologically connected to the ventilated crust to the west or the trench to the east.</p>
Supplement: Extensive diversity and rapid turnover of phage defense repertoires in cheese-associated bacterial communities
<p>Background<br> Phages are key drivers of genomic diversity in bacterial populations as they impose strong selective pressure on the evolution of bacterial defense mechanisms across closely related strains. The pan-immunity model suggests that such diversity is maintained because the effective immune system of a bacterial species is the one distributed across all strains present in the community. However, only few studies have analyzed the distribution of bacterial defense systems at the community-level, mostly focusing on CRISPR and comparing samples from complex environments. Here, we studied 2778 bacterial genomes and 188 metagenomes from cheese-associated communities, which are dominated by a few bacterial taxa and occur in relatively stable environments.</p> <p>Results<br> We corroborate previous laboratory findings that in cheese-associated communities nearly identical strains contain diverse and highly variable arsenals of innate and adaptive (i.e., CRISPR-Cas) immunity systems suggesting rapid turnover. CRISPR spacer abundance correlated with the abundance of matching target sequences across the metagenomes providing evidence that the identified defense repertoires are functional and under selection. While these characteristics align with the pan-immunity model, the detected CRISPR spacers only covered a subset of the phages previously identified in cheese, providing evidence that CRISPR does not enable complete immunity against all phages, and that the innate immune mechanisms may have complementary roles.</p> <p>Conclusions<br> Our findings show that the evolution of bacterial defense mechanisms is a highly dynamic process and highlight that experimentally tractable, low complexity communities such as those found in cheese, can help to understand ecological and molecular processes underlying phage-defense system relationships. These findings can have implications for the design of robust synthetic communities used in biotechnology and the food industry.</p>
Code and data supplement for "Unveiling the transition from niche to dispersal assembly in ecology"
<p>This repository contains the data and code needed to reproduce the results and figures in the article “Unveiling the transition from niche to dispersal assembly in ecology” published in Nature.</p>
Figure 2. Atractides elburzensis n in Checklist of the water mites (Acari, Hydrachnidia) of Iran: Second supplement and description of one new species
Figure 2. Atractides elburzensis n. sp., holotype male, Kheirud stream; A = idiosoma, dorsal view; B = idiosoma, ventral view; C = palp, medial view; D = I-L-5 and -6. Scale bars = 100µm.
Figure 4 in Checklist of the water mites (Acari, Hydrachnidia) of Iran: Second supplement and description of one new species
Figure 4. Number of water mites from China (Jinet al. 2010), India (Pešić et al. 2010b), Iran (present study), Turkey (Erman et al. 2010), Balkan Peninsula (Pešić et al. 2010a), Montenegro (Pešić et al. 2010a), Bulgaria (Pešić et al. 2010a), Greece (Pešić et al. 2010a), France (Smit & Gerecke 2010), The Netherlands (Smit et al. 2012), Germany (Gerecke & Lehmann 2005), Poland (Biesiadka 1997) and the Baltic countries (Estonia, Latvia and Lithuania - Smitet al. 2010).
Figure 3 in Checklist of the water mites (Acari, Hydrachnidia) of Iran: Second supplement and description of one new species
Figure 3. Sampling site ofAtractides elburzensisn. sp. (Mazandaran Province, Kheirud Kenar forest, stream Kheirud). Photo. V. Pešić
Surface Survey and Legacy Data in the Upper Plain of the Heraion of Perachora: The Perachora Peninsula Archaeological Project 2020 [Digital Supplement with updated polygons from 2020]
<p><strong>The digital Supplement </strong>contains figures in original size (TIFF) & digital data (SHP, CSV). The data can be also found in the linked GitHub repository <a href="https://github.com/sdam-au/perachora-medit-arch/">https://github.com/sdam-au/perachora-medit-arch/</a>.</p> <p> </p> <p><strong>Abstract</strong></p> <p>The Perachora Peninsula Archaeological Project held its first season of intensive surface survey from 12 January to 2 February 2020, during which time we focused on the region called the Upper Plain, situated above the sanctuary of Hera, which was in use from the 8th to the 2nd century BC. The nature of this area has been disputed, with Humfry Payne seeing it as a substantial town, while Richard Tomlinson referred to it as “a sporadic scatter of structures.” In order to clarify the nature of the settlement we employed a two-pronged effort: first to verify and document the legacy data in Tomlinson’s plan of the area, and second to conduct intensive surface survey from the boundary of the sanctuary to Lake Vouliagmeni. Within three weeks, our teams measured, photographed, and took the coordinates of nearly all the structures on Tomlinson’s plan, which included domestic structures, a small temple, and an extensive waterworks system, and several that had not been previously recorded. Building A 1 and the Fountain House were cleared and recorded using photogrammetry. The survey’s finds informed our legacy data verification efforts. Densities across all land types were high: nearly 23,000 artefacts were counted, and all but nine survey units produced artefacts. A preliminary analysis of the ceramics indicates a consistent habitation from the Archaic through the Classical period. Concentrations of miniature votives and fine wares were also found on hillsides, possibly indicating open-air shrines. Our work also highlights the need to conserve the structures in the Upper Plain.</p>
Interaction of biomolecules with anatase, rutile and amorphous TiO2 surfaces: A molecular dynamics study / supplement
<ul> <li>S1 File - Short videos representing the interaction of the 6 different biomolecules (KGD, KRSR, LGD, LRSR, RGD and RSR) with the 3 different TiO<sub>2</sub> surface (anatase, amorphous and rutile).</li> <li>S2 File - A representative trajectory file of the LRSR peptide and amorphous TiO<sub>2</sub> surface MD simulation without the ions and water molecules.</li> <li>S3 File - Force-distance curve data for the binding energy calculations.</li> </ul>
Supplemental material of "An annotated whole-genome multilocus sequence typing schema for scalable high resolution typing of Streptococcus pyogenes"
<p>This supplemental material includes the genome assemblies, associated metadata and analysis results for five datasets used to define a publicly available annotated wgMLST schema for <em>S. pyogenes</em> and to evaluate its suitability for high resolution typing. A brief description for each file in the dataset is available in the included README file. Raw sequencing data and sample metadata for the 265 isolates included in Dataset1 have been deposited in the European Nucleotide Archive (ENA) under Project <a href="https://www.ebi.ac.uk/ena/browser/view/PRJEB49967?show=reads">PRJEB49967</a>.</p> <p>The wgMLST schema was created with <a href="https://github.com/B-UMMI/chewBBACA">chewBBACA</a> and is publicly available at <a href="https://chewbbaca.online/species/1/schemas/1">chewie-NS</a>, where a more detailed description of schema creation, annotation and curation can be found.</p>
Supplemental Material for IEEE VIS 2023 Short Paper 'Compact Phase Histograms for Guided Exploration of Periodicity'
<p>Supplemental video explaining the approach described in our 2023 IEEE VIS short paper "Compact Phase Histograms for Guided Exploration of Periodicity," which is going to be presented in Melbourne, Australia October 22–27, 2023.</p>
Artifacts supplementing the MEMICS 2016 paper "Avalanche effect in improperly initialized CAESAR candidates"
<p><strong>Raw experiment data</strong></p> <ul> <li>Paper: Avalanche effect in improperly initialized CAESAR candidates</li> <li>Auhors: Martin Ukrop and Petr Švenda</li> <li>Conference: Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (MEMICS) 2016</li> <li>Paper details website: http://crcs.cz/wiki/public/papers/memics2016</li> </ul> <p><strong>Files and folders</strong></p> <ul> <li>data-statistical-batteries.zip -- numerical results from NIST STS, Dieharder and TestU01</li> <li>reference-eacirc.7z -- EACirc outputs from reference experiments (both streams random)</li> <li>pmn-zero-eacirc.7z -- EACirc outputs in scenario with zero-initialized public message numbers - see one example run results in folder pmn-zero_2015-12-12_EACcuda_CAESAR_a001_00001</li> <li>pmn-counter-eacirc.7z -- EACirc outputs in scenario with couter-initialized public message numbers - see one example run results in folder pmn-counter_2015-12-12_EACcuda_CAESAR_a001_00001</li> <li>pmn-random-eacirc.7z -- EACirc outputs in scenario with random-initialized public message numbers - see one example run results in folder pmn-random_2015-12-12_EACcuda_CAESAR_a001_00001</li> </ul> <p><strong>File formats</strong></p> <p>NIST STS, Dieharder and TestU01 provide standard output files with resulting p-values of individual tests. For interpretation, see the documentation of the test suites.</p> <p>EACirc's output files adhere to syntax described in the developer wiki at https://github.com/crocs-muni/eacirc Note, however, that the tool evolves and the syntax might have changed. The format tries to be as self-explanatory as possible, but if in doubt, feel free to email the developers.</p>
SUPPLEMENT TO "EAST BODISH REVISITED": DATA
<p>This dataset is the supplement to the publication "East Bodish Revisited".</p> <p>BULLETIN OF TIBETOLOGY, Vol 54 No 1 2023</p> <p>BODIC LINGUISTICS</p> <p>This issue of the <em>Bulletin of Tibetology, </em>guest-edited by Prof. George van Driem, is devoted chiefly to linguistics, but more especially to the field of Tibetology in its quintessence. The con­tributions are devoted not just to Sik­kim and the languages of Sikkim, but together they present the most substantive new collection of studies on Bodish languages and on Bodic as a linguis­tic subgroup. In detailing the most recent linguistic insights and clarifying the relationship between Tibetan, Drenjongke and Dzongkha, this issue of the <em>Bulletin</em> updates our understanding of the Bodish languages. At a higher taxonomic level in the family tree, a new understanding is also presented of Bodic as comprising an important branch within the Trans-Himalayan language family.</p> <p>CONTENTS</p> <p>George van Driem Editorial</p> <p>George van Driem The Sociolinguistic Situation of Sikkim’s Indigenous Languages and the Origins of the Peoples of Sikkim</p> <p>Timotheus A. Bodt East Bodish Revisited</p> <p>Nathan W. Hill A Tibetan Passive Construction in the Old Tibetan <em>Rāmāyaṇa</em></p> <p>Alex McKay Book Review: <em>Marching into View: The Tibetan Army in Historic Photographs </em>(1895–1959), Alice Travers, 2022</p> <p><a href="https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Ffiles.namgyalinstitutesikkim.org%2FBulletin%2520Vol%252054%2520No%25201%25202023.pdf&data=05%7C01%7Ctb47%40mysoas.onmicrosoft.com%7C60b2776a5ef442a1f11408db9fc7a568%7C674dd0a1ae6242c7a39f69ee199537a8%7C0%7C0%7C638279454887605807%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=3gRKlexqG8Z3J30ijgZG3nTZf5Kh9CAjzs%2Bk8i7Huvo%3D&reserved=0">https://files.namgyalinstitutesikkim.org/Bulletin%20Vol%2054%20No%201%202023.pdf</a></p> <p>Back issues of the <em>Bulletin of Tibetology</em> can be downloaded here: <a href="https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fnamgyalinstitutesikkim.org%2Fbulletin%2F&data=05%7C01%7Ctb47%40mysoas.onmicrosoft.com%7C60b2776a5ef442a1f11408db9fc7a568%7C674dd0a1ae6242c7a39f69ee199537a8%7C0%7C0%7C638279454887605807%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=%2Fi4ZxNC3IeDFB1%2FIpv6xd%2FTK4ENwt7C%2FuVC%2FlIgBaF8%3D&reserved=0">https://namgyalinstitutesikkim.org/bulletin/</a></p> <p>This dataset contains all the cognate sets in the paper, with the same sequential numbering as in the paper. This provides for an easy cross-reference between this paper and the supplement. In addition to the information provided in the individual cognate sets in this paper, the cognate sets in the supplement contain important additional information. Whereas the cognate sets in this paper only have a reference to the source code in Table 1 when the source for an individual form is distinct from the main source consulted for each linguistic variety, the cognate sets in the supplement have a more specific reference to the page numbers as well. This makes it easier for people with no or limited knowledge of the source languages (in particular, Dzongkha and Chinese) of some of the source materials to cross-check the referenced forms in their original sources: This also contributes to greater transparency and accountability regarding the use of secondary sources. The cognate sets in the supplement also contain more forms in individual linguistic varieties, for example, forms that for some reason (e.g., borrowing, or lexical innovation) are not illustrative for the sound correspondence that the cognate set is deemed to exemplify, likely cognate forms in other languages, semantic content of the form in the specific variety if this differs from the semantic content of the concept it is cognate with, and other etymological notes and remarks of interest. The abbreviations for the data sources are </p> <table> <tbody> <tr> <td> <p><strong>abbr.</strong></p> </td> <td> <p><strong>variety</strong></p> </td> <td> <p><strong>source</strong></p> </td> <td> <p><strong>source (full)</strong></p> </td> </tr> <tr> <td> <p><strong>DD</strong></p> </td> <td> <p><strong>Dakpa-Dzala</strong></p> </td> </tr> <tr> <td> <p>DkW</p> </td> <td> <p>Dakpa Wénlàng</p> </td> <td> <p><strong>Lù02</strong></p> </td> <td> <p>Lù 2002</p> </td> </tr> <tr> <td> <p>DkM</p> </td> <td> <p>Dakpa Mámǎ</p> </td> <td> <p><strong>Lù02</strong></p> </td> <td> <p>Lù 2002</p> </td> </tr> <tr> <td> <p>Lù86</p> </td> <td> <p>Lù 1986</p> </td> </tr> <tr> <td> <p>DkB</p> </td> <td> <p>Dakpa Bāngjīn</p> </td> <td> <p><strong>Lù02</strong></p> </td> <td> <p>Lù 2002</p> </td> </tr> <tr> <td> <p>Dz</p> </td> <td> <p>Dzalakha</p> </td> <td> <p><strong>DDC17</strong></p> </td> <td> <p>DDC 2017</p> </td> </tr> <tr> <td> <p>TAB</p> </td> <td> <p>own data</p> </td> </tr> <tr> <td> <p>vD07</p> </td> <td> <p>van Driem 2007b</p> </td> </tr> <tr> <td> <p>DkT</p> </td> <td> <p>Dakpa Tawang</p> </td> <td> <p><strong>W02</strong></p> </td> <td> <p>Wangchu 2002</p> </td> </tr> <tr> <td> <p>TAB</p> </td> <td> <p>own data</p> </td> </tr> <tr> <td> <p>DkD</p> </td> <td> <p>Dakpa Dáwàng</p> </td> <td> <p><strong>Lù02</strong></p> </td> <td> <p>Lù 2002</p> </td> </tr> <tr> <td> <p>DkC</p> </td> <td> <p>Dakpa Cuònà</p> </td> <td> <p><strong>Y92</strong></p> </td> <td> <p>Yìxī 1992</p> </td> </tr> <tr> <td> <p><strong>OEB</strong></p> </td> <td> <p><strong>Other East Bodish</strong></p> </td> </tr> <tr> <td> <p>Kt</p> </td> <td> <p>Kurtöp</p> </td> <td> <p><strong>KD16</strong></p> </td> <td> <p>Hyslop et al. 2016</p> </td> </tr> <tr> <td> <p>KG17</p> </td> <td> <p>Hyslop 2017</p> </td> </tr> <tr> <td> <p>MM94</p> </td> <td> <p>Michailovsky and Mazaudon 1994</p> </td> </tr> <tr> <td> <p>Bt</p> </td> <td> <p>Bumthang</p> </td> <td> <p>vD15</p> </td> <td> <p>van Driem 2015</p> </td> </tr> <tr> <td> <p>MM94</p> </td> <td> <p>Michailovsky and Mazaudon 1994</p> </td> </tr> <tr> <td> <p><strong>DDC18</strong></p> </td> <td> <p>Dzongkha Development Commission 2018</p> </td> </tr> <tr> <td> <p>IT21</p> </td> <td> <p>Ikeda 2021b</p> </td> </tr> <tr> <td> <p>BtU</p> </td> <td> <p>Bumthang Ura</p> </td> <td> <p><strong>DDC18</strong></p> </td> <td> <p>Dzongkha Development Commission 2018</p> </td> </tr> <tr> <td> <p>BtC</p> </td> <td> <p>Bumthang Chume</p> </td> <td> <p><strong>DDC18</strong></p> </td> <td> <p>Dzongkha Development Commission 2018</p> </td> </tr> <tr> <td> <p>Kh</p> </td> <td> <p>Khengkha</p> </td> <td> <p><strong>YA96</strong></p> </td> <td> <p>Yangzom and Arkesteijn 1996</p> </td> </tr> <tr> <td> <p>IT21</p> </td> <td> <p>Ikeda 2021b</p> </td> </tr> <tr> <td> <p>TAB</p> </td> <td> <p>own data</p> </td> </tr> <tr> <td> <p>Md</p> </td> <td> <p>(Upper) Mangdep</p> </td> <td> <p><strong>B16</strong></p> </td> <td> <p>Bosch 2016</p> </td> </tr> <tr> <td> <p> </p> </td> <td> <p><strong>Other languages</strong></p> </td> </tr> <tr> <td> <p>Tib</p> </td> <td> <p>Tibetan</p> </td> <td> <p> </p> </td> <td> <p>(various)</p> </td> </tr> <tr> <td> <p>Chi</p> </td> <td> <p>Chinese</p> </td> <td> <p>BS</p> </td> <td> <p>Baxter and Sagart 2014</p> </td> </tr> <tr> <td> <p>Tsh</p> </td> <td> <p>Tshangla</p> </td> <td> <p>DDC18a</p> </td> <td> <p>Dzongkha Development Commission 2018a</p> </td> </tr> <tr> <td> <p>TAB</p> </td> <td> <p>own data</p> </td> </tr> <tr> <td> <p>Bur</p> </td> <td> <p>Burmese</p> </td> <td> <p> </p> </td> <td> <p>mainly Hill 2019</p> </td> </tr> </tbody> </table> <pre>References: Baxter, William H. & Laurent Sagart. 2014. <em>Old Chinese: a new reconstruction. </em>New York: Oxford University Press. Bosch, André. 2016<em>. Language contact in Upper Mangdep: a comparative grammar of verbal constructions.</em> BA thesis. University of Sydney: Department of Linguistics, Faculty of Arts and Social Sciences. DDC (Dzongkha Development Commission). rdzoṅ-kha daṅ dza-la-kha iṅ-liś śan-sbyar tshig-gi mdzod [<em>Dzongkha-Dzalakha-English Lexicon</em>]. Thimphu: Dzongkha Development Commission. —— 2018. bum-thaṅ-kha rdzoṅ-kha iṅ-liś śan-sbyar miṅ-mdzod [<em>Bumthang-Dzongkha-English Lexicon</em>]. Thimphu: Dzongkha Development Commission. —— 2018a. tshangs-la-lo – rdzoṅ-kha – iṅ-liś skad gsum śan-sbyar miṅ-mdzod tshaṅs-lhaḥi sgra-dbyaṅs [<em>Melody of Brahma: Tshangla – Dzongkha – English trilingual lexicon</em>]. Thimphu: Dzongkha Development Commission. van Driem, George. 2007b. Dzala and Dakpa form a coherent subgroup within East Bodish, and some related thoughts. <em>Linguistics of the Himalayas and beyond</em>: 71–85. —— 2015. <em>Synoptic grammar of the Bumthang language.</em> Himalayan Linguistics Archive 6 (2015), 1–77. Hill, Nathan W. 2019. <em>The Historical Phonology of Tibetan, Burmese, and Chinese. </em>Cambridge: Cambridge University Press. Hyslop, Gwendolyn. 2017. <em>A grammar of Kurtöp.</em> Languages of the Greater Himalayan Region 18. Leiden/Boston: Brill. Hyslop, Gwendolyn, Karma Tshering, Kuenga Lhendrup, and Pema Chhophyel. 2016. <em>Kurtöp/English/Dzongkha Dictionary</em> (draft). Ikeda, Takumi. 2021b. Basic Vocabulary of Khengkha with English-Chinese Index Ver. 6 (2021/02/28). In, Yasuhiko Nagano and Takumi Ikeda (eds.) <em>Grammatical Phenomena of Sino-Tibetan Languages 4: Link languages and archetypes in Tibeto-Burman</em>: 121–241. Lù, Shàozūn 陆绍尊. 1986.《错那门巴语简志》Cuònà Ménbāyǔ Jiǎnzhì [<em>Brief description of the Cuona Menba language</em>]. 北京: 民族出版社出版发 行 Běijīng: Mínzú chūbǎn shè [Peking: Nationalities Press]. —— 2002.《门巴语方言研究》<em>Ménbā yǔ fāngyán yánjiū</em> [<em>A study of the Menba dialect</em>]. 中国少数民族语言方言研究丛书 Zhōngguó shào shù mínzú yǔyán fāngyán yánjiū cóngshū [Chinese Minority Language Dialect Research Series]). 北京: 民族出版社 Běijīng: Mínzú chūbǎn shè [Peking: Nationalities Press]. Michailovsky, Boyd and Martine Mazaudon. 1994. Preliminary notes on the languages of the Bumthang group. In, Per Kvaerne (ed.) <em>Tibetan Studies, Proceedings of the 6th seminar of the International Association for Tibetan Studies</em>. Fagernes: The institute for comparative research in human culture, pp. 545–557. Wangchu, Lhama. 2002. <em>An introduction to Tawang Monpa language. </em>Itanagar: Directorate of Research, Department of Cultural Affairs, Government of Arunachal Pradesh. Yangzom, Deki and Marlen Arkesteijn. 1996. <em>Khengkha Lessonbook.</em> Thimphu: SNV Bhutan. Yìxī 益西 [Ye-śes]. 1992.《试论措那门巴话与藏语关系》Shì lùn Cuònà Ménbā huà yǔ Zàng yǔ guānxì [On the relationship between the Cuònà Ménbā dialect and the Tibetan language]. 西藏研究 1992年, 3期: 108–122 <em>Xīzàng Yánjiū</em> 1992 nián, 3 qī: 108–122 [<em>Tibet Studies</em> 1992, Issue 3: 108–122].</pre>
Data and Code supplement to: Effects of intraspecific variation in a native species´ phenology on its coexistence with non-native plants
<p>Data and code to generate the results of the paper published at Oikos "Effects of intraspecific variation in a native species´ phenology on its coexistence with non-native plants". </p> <p>Both R files can be independently run, and datasets include the raw data to generate the interaction coefficients according Lasthenia phenology or simulations to investigate the effect of intraspecific trait variation of Lasthenia population abundances. </p>
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