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Figure 7 in Abundance, reproduction, and feeding of three species of British terrestrial planarians: Observations over 4 years

Figure 7. Khaki Microplana species. (a) Monthly occurrence (corrected numbers) over 48 months from March 2001 to February 2005: 1 to 5 on the x-axis are years 2001 to 2005; (b) mean¡SE monthly numbers from January (J) to December (D) over 4 years.

opencc-by-4.0Mar 2007View details →

Figure 8 in Abundance, reproduction, and feeding of three species of British terrestrial planarians: Observations over 4 years

Figure 8. Kitchen site: cocoons (& and solid line) and hatchlings (• and dashed line) in 2003 and 2004. Mean¡SE values for each month.

Figure 12 in Review of the Genus Megalomma (Polychaeta: Sabellidae) in Australia with Description of Three New Species, New Records and Notes on Certain Features with Phylogenetic Implications

Figure 12. SEM of Megalomma sp. 2, MV F70842. (A) anterior thoracic chaetiger and posterior peristomial ring collar, dorsal view; (B) same, lateral view; (C) dorsal most subdistal radiolar eye; (D) notochaetae, first chaetiger; (E) uncini, anterior thoracic chaetiger; (F) companion chaetae, anterior thoracic chaetae; (G) posterior thoracic notochaetal fascicle, ventral view; (H) anterior abdominal uncini; (I) anterior abdominal neurochaetal fascicle.

Figure 11 in Review of the Genus Megalomma (Polychaeta: Sabellidae) in Australia with Description of Three New Species, New Records and Notes on Certain Features with Phylogenetic Implications

Figure 11. SEM of Megalomma inflata n.sp., AM W23057; (A) tip of radioles and dorsalmost compound subdistal eyes; (B) base of radiolar crown and anterior segments, lateral view; (C) margins of collar, dorsolateral view; (D) chaetae, first thoracic segment; (E) chaetae, anterior thoracic segment; (F) inferior thoracic chaetae, posterior thoracic segment; (G) abdominal chaetae; (H) thoracic uncini; (I) companion chaetae, same chaetiger; (J) anterior abdominal uncini.

Figure 7 in Review of the Genus Megalomma (Polychaeta: Sabellidae) in Australia with Description of Three New Species, New Records and Notes on Certain Features with Phylogenetic Implications

Figure 7. SEM of Megalomma interrupta n.sp. paratype, AM W35479. (A) anterior thoracic chaetiger and posterior peristomial ring collar, ventral view; (B) same, dorsal view; (C) thorax and branchial crown junction, showing dorsal collar margins, lateral view; (D) chaetae fascicle, first thoracic chaetiger, ventral view; (E) companion chaetae, second thoracic chaetiger; (F) uncini, same chaetiger; (G) uncini, last thoracic chaetiger; (H) last thoracic notochaetal fascicle, ventral view; (I) anterior abdominal neurochaetal fascicle, ventral view; (J) anterior abdominal uncini; (K) subdistal compound radiolar eye.

Figure 9 in Review of the Genus Megalomma (Polychaeta: Sabellidae) in Australia with Description of Three New Species, New Records and Notes on Certain Features with Phylogenetic Implications

Figure 9. Graph representing the variety of number of pairs of eyes against the number of pairs of radioles in Megalomma interrupta n.sp.

Figure 10 in Review of the Genus Megalomma (Polychaeta: Sabellidae) in Australia with Description of Three New Species, New Records and Notes on Certain Features with Phylogenetic Implications

Figure 10. SEM of Megalomma cf. miyukiae, AM W35502: (A) anterior thoracic chaetiger and posterior peristomial ring collar, ventral view; (B) same, dorsal view; (C) notochaetae, first chaetiger, ventral view; (D) inferior thoracic chaetae, anterior chaetiger, ventral view; (E) whole fascicle; (F) thoracic uncini; (G) abdominal uncini; (H) companion chaetae; (I) anterior abdominal neurochaetal fascicle.

Figure 6 in Review of the Genus Megalomma (Polychaeta: Sabellidae) in Australia with Description of Three New Species, New Records and Notes on Certain Features with Phylogenetic Implications

Figure 6. SEM of Megalomma cf. acrophthalmos, MAGNT W14008. (A) dorsal collar margins with dorsal lappets; (B) lateral collar margins and anterior thoracic chaetigers, lateral view; (C) anterior collar margins and ventral lappets; (D) chaetae first thoracic chaetiger, ventral view; (E) chaetae of second thoracic chaetiger, ventral view; (F) uncini, same segment; (G) uncini last thoracic segment; (H) companion chaetae posterior thoracic chaetiger; (I) chaetae, anterior abdominal segment; (J) uncini, same chaetiger.

Figure 2 in Review of the Genus Megalomma (Polychaeta: Sabellidae) in Australia with Description of Three New Species, New Records and Notes on Certain Features with Phylogenetic Implications

Figure 2. Photographs. (A–E) Megalomma phyllisae n.sp., holotype AM W13643: (A) anterior thoracic chaetiger and branchial crown, lateral view; (B) subdistal compound eye in dorsal most radiole; (C) posterior peristomial ring collar and anterior thoracic chaetigers, dorsal view; (D) same, ventral view; (E) posterior abdominal chaetiger and pygidium, dorsal view. (F–I) Megalomma trioculatum (paratype, USNM 38409): (F) radiolar crown and anterior segments, lateral view; (G) dorsal collar margins; (H) ventral lappets and anterior segments, lateral view; (I) dorsal most radiole with compound subdistal eye. (J–M) Megalomma interrupta n.sp. [Continued on facing page…]

Figure 13 in Review of the Genus Megalomma (Polychaeta: Sabellidae) in Australia with Description of Three New Species, New Records and Notes on Certain Features with Phylogenetic Implications

Figure 13. First of two parsimonious trees of 39 steps with consistency index of 0.48 of and retention indices of 0.67. Black dots represent synapomorphies and white dots homo- plasies. Jackknife support are in all clades below 37 with the exception of the Megalomma clade with 100 support value. The second MPT differs in the position of M. nechamae, as sistergroup of the clade M. lanigera–M. suspiciens.

Figure 3 in Review of the Genus Megalomma (Polychaeta: Sabellidae) in Australia with Description of Three New Species, New Records and Notes on Certain Features with Phylogenetic Implications

Figure 3. SEM of Megalomma phyllisae n.sp., paratype AM W35476: (A) chaetae last thoracic chaetiger, ventral view; (B,C) companion chaetae same chaetiger; (D) uncini same chaetiger; (E) uncini anterior abdominal chaetiger; (F) Anterior abdominal chaetae, dorsal view; (G) detail of inferior abdominal chaetae same chaetiger.

Figure 8 in Review of the Genus Megalomma (Polychaeta: Sabellidae) in Australia with Description of Three New Species, New Records and Notes on Certain Features with Phylogenetic Implications

Figure 8. SEM of Megalomma interrupta n.sp. (A–D) AM W35490, from Lizard Island (QLD): (A) uncini, third thoracic chaetiger; (B) inferior notochaetae, fifth thoracic chaetiger, ventral view; (C) anterior abdominal neurochaetae, ventral view; (D) anterior abdominal uncini. (E–H) AM W35488, from One Tree Island (QLD), with radiolar eyes on dorsalmost pairs of radioles: (E) thoracic uncini; (F) thoracic inferior notochaetae, ventral view; (G) anterior abdominal neurochaetae, ventral view; (H) anterior abdominal uncini. (I–K) AM W35488 from One Tree Island (QLD) with several radiolar eyes: (I) thoracic uncini; (J) thoracic inferior notochaetae, ventral view; (K) anterior abdominal uncini. (L–O) AM W35498, specimen from Kimberleys (WA): (L) uncini, third thoracic chaetiger; (M) notochaetae, fourth thoracic chaetiger, ventral view; (N) anterior abdominal neurochaetae; (O) anterior abdominal uncini.

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Full expression and splicing QTL summary statistics for three human spinal cord segments

This dataset is part of the manuscript: "Integrative genetic analysis of the amyotrophic lateral sclerosis spinal cord implicates glial activation and suggests new risk genes" by Jack Humphrey, et al. The files below contain nominal and permuted quantitative trait loci (QTL) associations between common genetic variants derived from whole genome sequencing and either gene expression or splicing phenotypes generated from RNA-seq of post-mortem spinal cord sections. All QTLs were mapped with TensorQTL. Nominal association files are coordinate sorted, bgzip-compressed and tabix-indexed tab-separated variable files. Top association files are gzip-compressed tab-separated variable files. Sample sizes for each dataset are as follows: Cervical spinal cord n = 216. Lumbar spinal cord n = 197. Thoracic spinal cord n = 68. Description of files: CervicalSpinalCord_expression_peer30_gene.cis_qtl.txt.gz - Top per-gene eQTL summary statistics from cervical spinal cord  CervicalSpinalCord_expression_peer30_gene.cis_qtl_nominal_tabixed.tsv.gz - Full nominal eQTL summary statistics from cervical spinal cord  CervicalSpinalCord_splicing_peer15_cluster.cis_qtl.txt.gz - Top per-cluster sQTL summary statistics from cervical spinal cord CervicalSpinalCord_splicing_peer15_gene.cis_qtl_nominal_tabixed.tsv.gz - Full nominal sQTL summary statistics from cervical spinal cord LumbarSpinalCord_expression_peer30_gene.cis_qtl.txt.gz - Top per-gene eQTL summary statistics from lumbar spinal cord LumbarSpinalCord_expression_peer30_gene.cis_qtl_nominal_tabixed.tsv.gz - Full nominal eQTL summary statistics from lumbar spinal cord LumbarSpinalCord_splicing_peer10_cluster.cis_qtl.txt.gz - Top per-cluster sQTL summary statistics from lumbar spinal cord LumbarSpinalCord_splicing_peer10_gene.cis_qtl_nominal_tabixed.tsv.gz - Full nominal sQTL summary statistics from lumbar spinal cord ThoracicSpinalCord_expression_peer10_gene.cis_qtl.txt.gz - Top per-gene eQTL summary statistics from thoracic spinal cord ThoracicSpinalCord_expression_peer10_gene.cis_qtl_nominal_tabixed.tsv.gz - Full nominal eQTL summary statistics from thoracic spinal cord ThoracicSpinalCord_splicing_peer5_cluster.cis_qtl.txt.gz - Top per-cluster sQTL summary statistics from thoracic spinal cord ThoracicSpinalCord_splicing_peer5_gene.cis_qtl_nominal_tabixed.tsv.gz - Full nominal sQTL summary statistics from thoracic spinal cord als_snps_maf0.01_alleles.tsv.gz - Allele information for all SNPs tested in the eQTL and sQTL analysis Table columns are formatted as follows: Nominal QTL results include all SNP-gene pairs tested using either a 1Mb window from each side of the transcription start site (TSS) of the gene (eQTLs) or 100kb either side of the middle of the splicing cluster (sQTLs). Table columns are formatted as follows: <ul> <li>phenotype_id - ensembl ID of the gene tested (GENCODE v30) for eQTL, or the ID of the splice junction for sQTLs, splicing junction position, splicing cluster id, and gene Ensembl id (GENCODE v30),separated by a colon</li> <li>variant_id - SNP tested for association (rsid or chr:position:ref:alt)</li> <li>tss_distance - distance of the SNP to the gene transcription start site (TSS)</li> <li>maf - minor allele frequency in cohort</li> <li>ma_samples - number of samples carrying the minor allele</li> <li>ma_count - total number of minor alleles across individuals</li> <li>pval_nominal - nominal P-value from linear regression</li> <li>slope - slope of the linear regression</li> <li>slope_se - standard error of the slope</li> </ul> Permuted QTL results include only the top SNP-gene association for each gene (eQTL) or cluster (sQTL). Table columns are formatted as follows: <ul> <li>phenotype_id - ensembl ID of the gene tested (GENCODE v30), or the coordinates of the cluster, formatted as coordinate, splicing cluster id, and gene Ensembl id (GENCODE v30), separated by a colon</li> <li>num_var - total number of variants tested in cis</li> <li>beta_shape1 - first parameter value of the fitted beta distribution</li> <li>beta_shape2 - second parameter value of the fitted beta distribution</li> <li>true_df - effective degrees of freedom the beta distribution approximation</li> <li>pval_true_df - empirical P-value for the beta distribution approximation</li> <li>variant_id - ID of the top variant (rsid or chr:position:ref:alt)</li> <li>tss_distance - distance of the SNP to the gene transcription start site (TSS)</li> <li>ma_samples - number of samples carrying the minor allele</li> <li>ma_count - total number of minor alleles across individuals</li> <li>maf -minor allele frequency in MiGA cohort</li> <li>ref_factor - flag indicating if the alternative allele is the minor allele in the cohort (1 if AF <= 0.5, -1 if not)</li> <li>pval_nominal - nominal P-value from linear regression</li> <li>slope - slope of the linear regression</li> <li>slope_se - standard error of the slope</li> <li>pval_perm - first permutation P-value directly obtained from the permutations with the direct method</li> <li>pval_beta - second permutation P-value obtained via beta approximation. This is the one to use for downstream analysis</li> <li>qval - Storey q-value derived from pval_beta (FDR adjusted)</li> <li>pval_nominal_threshold - nominal P-value threshold for calling a variant-gene pair significant for the gene</li> </ul> Allele Information for each variant: <ul> <li>CHROM - chromosome position of the variant</li> <li>POS - position of the variant in the chromosome</li> <li>REF - reference allele (GRCh38)</li> <li>ALT - alternative allele (this is the effect allele in the eQTL and sQTL analysis)</li> <li>ID - variant id (rsid or chr:position:ref:alt)</li> </ul>

Fig. 29 in Revision of the Andrena wollastoni group (Hymenoptera, Anthophila, Andrenidae) from the Madeira Archipelago and the Canary Islands: upgrading of three former subspecies and a description of three new subspecies

Fig. 29: Index spectrum (boxplots) of HL/HW index (head length to width) of the different taxa. Groups with the same letter are not significantly different. In the case of groups of two letters, significance exists only with one group identified by a single letter. Significance levels: * p <= 0,05; ** p <= 0,01; *** p <= 0,001; ns = not significant.

Fig. 32 in Revision of the Andrena wollastoni group (Hymenoptera, Anthophila, Andrenidae) from the Madeira Archipelago and the Canary Islands: upgrading of three former subspecies and a description of three new subspecies

Fig. 32: Shape PC1 plotted against shape PC2 and the two best plotted ratios of morphometric features: (a) Andrena acuta – A. catula, (b) A. acuta – A. dourada, (c) A. acuta – A. g. palmae, (d) A. acuta – A. lineolata, (e) A. acuta – A. tiaretta, and (f) A. acuta – A. wollastoni.

Fig. 36 in Revision of the Andrena wollastoni group (Hymenoptera, Anthophila, Andrenidae) from the Madeira Archipelago and the Canary Islands: upgrading of three former subspecies and a description of three new subspecies

Fig. 36: Shape PC1 plotted against shape PC2 and the two best plotted ratios of morphometric features: (a) Andrena a. acuta – A. g. palmae, (b) A. a. tenoensis – A. a. wildpreti, (c) A. a. tenoensis – A. g. gomerensis, (d) A. a. tenoensis – A. g. palmae, (e) A. g. gomerensis – A. a. wildpreti, (f) A. g. palmae – A. a. wildpreti.

Fig. 35 in Revision of the Andrena wollastoni group (Hymenoptera, Anthophila, Andrenidae) from the Madeira Archipelago and the Canary Islands: upgrading of three former subspecies and a description of three new subspecies

Fig. 35: Shape PC1 plotted against shape PC2 and the two best plotted ratios of morphometric features: (a) A. lineolata – A. tiaretta, (b) A. lineolata – A. wollastoni, (c) A. tiaretta – A. wollastoni, (d) A. a. acuta – A. a.tenoensis, (e) A. a. acuta – A. wildpreti, and (f) A. a. acuta – A. g. gomerensis.

Fig. 34 in Revision of the Andrena wollastoni group (Hymenoptera, Anthophila, Andrenidae) from the Madeira Archipelago and the Canary Islands: upgrading of three former subspecies and a description of three new subspecies

Fig. 34: Shape PC1 plotted against shape PC2 and the two best plotted ratios of morphometric features: (a) A. dourada – A. lineolata, (b) A. dourada – A. tiaretta, (c) A. dourada – A. wollastoni, (d) A. gomerensis – A. lineolata, (e) A. gomerensis – A. tiaretta, and (f) A. gomerensis – A. wollastoni.

Fig. 27 in Revision of the Andrena wollastoni group (Hymenoptera, Anthophila, Andrenidae) from the Madeira Archipelago and the Canary Islands: upgrading of three former subspecies and a description of three new subspecies

Fig. 27: Body length spectrum (boxplots) of the different taxa. Groups with the same letter are not significantly different. In the case of groups of two letters, significance exists only with one group identified by a single letter. Significance levels: * p <= 0,05; ** p <= 0,01; *** p <= 0,001; ns = not significant.

Fig. 26 in Revision of the Andrena wollastoni group (Hymenoptera, Anthophila, Andrenidae) from the Madeira Archipelago and the Canary Islands: upgrading of three former subspecies and a description of three new subspecies

Fig. 26: Type specimen (lectotype) of Andrena wollastoni COCKERELL, 1922 (NHMUK). Photos by D. Notton: (a) habitus, dorsal view. (b) register label, syntype label, lectotype label, type number label, barcode number. (c) habitus, lateral view. (d) head, frontal view. (e) scopa.