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Fig. 2 in Populations of Odontesthes (Teleostei: Atheriniformes) in the Andean region of Southern South America: body shape and hybrid individuals
Fig. 2. Landmarks used in geometrics morphometrics analysis: 1, anterior tip of the premaxilla; 2, eye center; 3, posterior process of symplectic bone; 4, dorsal insertion of the pectoral fin; 5, anterior insertion of the first dorsal fin; 6, anterior insertion of the second dorsal fin; 7, dorsal insertion of the caudal fin; 8, posterior end of the lateral line; 9, ventral end of the caudal fin; 10, anterior insertion of the anal fin; 11, anus; 12, distal tip of the pelvic fin onto fish body; 13, anterior insertion of the pelvic fin; 14, vertical tie of landmark 12 onto the lateral line; 15, vertical tie of landmark 10 onto the lateral line. Black line scale: 2 cm.
Fig. 3. Maximum likelihood phylogeny for 72 unique haplotypes obtained from O. hatcheri, O in Populations of Odontesthes (Teleostei: Atheriniformes) in the Andean region of Southern South America: body shape and hybrid individuals
Fig. 3. Maximum likelihood phylogeny for 72 unique haplotypes obtained from O. hatcheri, O. bonariensis, and O. smitti. Haplotype labels indicate their sampling locality (as explained in Fig. 1 and Table 1) and the number of individuals (in parentheses). Several common haplotypes were recovered from several individuals from the same or different localities (most significantly haplotype 5). Monophyly of haplotypes from each species is supported by 100% bootstrap values, and two groups of O. hatcheri haplotypes (from EPU and CDP, indicated by heavier lines) also received strong bootstrap support. All other nodes were weakly supported by bootstrap analyses. *: presumptive hybrids individuals identified on meristic and morphological characters (Table 2).
Dataset and Model Code for "Fortitudinous fisher: the role of individuality and context dependency in informing habitat selection in risky environments."
<p>Fine-scale GPS location data for 43 fisher in Rhode Island formatted for habitat analysis using step selection function (200avail_7030_95x) as R file. R-script containing model code.</p>
Figure 2 in Harbor seal pup dispersal and individual morphology, hematology, and contaminant factors affecting survival
Figure 2. Proportion of tags still transmitting by week post deployment separated by location of deployment: SF = San Francisco Bay, TB = Tomales Bay, and TMMC = The Marine Mammal Center. Tags that were permanently ashore were considered to be no longer transmitting.
Figure 4 in Harbor seal pup dispersal and individual morphology, hematology, and contaminant factors affecting survival
Figure 4. The relationship between total tag deployment time and dispersal distance per day for satellite tagged seal pups.
◂Fig. 1 Live photos and dissection of parasitized Aphrodita longipalpa and Veneriserva pygoclava. A Ventral view of A. longipalpa. B Dorsal view of A. longipalpa with removed feltage chaetae, revealing the parasite visible through the body wall. C Ventrally dissected A. longipalpa, exposing the sizable female parasite. Veneriserva pygoclava individuals within the host are indicated by arrowheads. D Juvenile female V. pygoclava, with developing oocytes visible through the body wall along the mid-dorsal orange line. E Female V. pygoclava showing the mid-dorsal orange pigmentation and the white mark at the base of the prostomium. F Male V. pygoclava. G A large female and smaller male V. pygoclava, extracted from the same host. The pygidium is club-shaped in both males and females and juveniles. H Juvenile V. pygoclava shown from multiple angles, characterized by a complete white coloration; black jaws are magnified in panel in Hardly Venus's servant-morphological adaptations of Veneriserva to an endoparasitic lifestyle and its phylogenetic position within Dorvilleidae (Annelida)
◂Fig. 1 Live photos and dissection of parasitized Aphrodita longipalpa and Veneriserva pygoclava. A Ventral view of A. longipalpa. B Dorsal view of A. longipalpa with removed feltage chaetae, revealing the parasite visible through the body wall. C Ventrally dissected A. longipalpa, exposing the sizable female parasite. Veneriserva pygoclava individuals within the host are indicated by arrowheads. D Juvenile female V. pygoclava, with developing oocytes visible through the body wall along the mid-dorsal orange line. E Female V. pygoclava showing the mid-dorsal orange pigmentation and the white mark at the base of the prostomium. F Male V. pygoclava. G A large female and smaller male V. pygoclava, extracted from the same host. The pygidium is club-shaped in both males and females and juveniles. H Juvenile V. pygoclava shown from multiple angles, characterized by a complete white coloration; black jaws are magnified in panel
Figure 2 in Individual size, sex, and rearing environment impact on aggression in newly weaned seals
Figure 2. Frequency of aggression (smooth based on size by sex interaction on a linear scale predictor) from newly weaned female gray seals (n = 6) and their size (mass at capture in kilograms) with confidence intervals (dashed) and data points shown on the x-axis (two individuals were the same mass at capture, hence only five points).
Dataset for "Individual and temporal variability of the retina after chronic bilateral common carotid artery occlusion"
<p>Raw data corresponding to the paper entitled: "<strong>Individual and temporal variability of the retina after chronic bilateral common carotid artery occlusion" </strong>published in <em>Plos One</em> (2018) by Crespo-Garcia <em>et al. </em></p>
Overweight and obese patients with Nickel allergy have a worse metabolic profile compared to weight matched non-allergic individuals
<p>Deidentified dataset</p>
DATS 6401- Individual Project - Mo Zhou
<p>These are raw datasets I used in my project.</p>
Data for "Individual, but not population asymmetries, are modulated by social environment and genotype in Drosophila melanogaster"
<p>Dataset and scripts for the manuscript: "Individual, but not population asymmetries, are modulated by social environment and genotype in <em>Drosophila melanogaster". </em>We upload:</p> <p>1.Data. This directory contains the raw tracking data used for the analysis and the calibration files required by Flytracker for each strain of the Drosophila Genetic Reference Panel (RAL-69, RAL-136, RAL-338, RAL-535, RAL-796).<br> The format of the dataset consists in the output of tracking the (x,y) position and related features (e.g. velocity, distance) of flies in a circular arena using the software Flytracker - http://www.vision.caltech.edu/Tools/FlyTracker/ - For each video we have a trak.mat file and a feat.mat file. For instance, for a video in which we tracked the DGRP line RAL-136 (d338), with a pair of males (mm), trial 3 (t5) we had as outputs d338mmt5joined-feat.mat and d338mmt5joined-track.mat . You can find the description of the output here: http://www.vision.caltech.edu/Tools/FlyTracker/documentation.html</p> <p>2.Load_data _and_circling_scripts. This directory contains a MATLAB file with the instructions on how to load datasets and how to compute the circling index.</p> <p>3.Heatmap. This directory contains the instructions (readme_heatmap.txt) and scripts to (a) fix a bug in the feat files ouput by Flytracker using the calibration files and the script feat_compute_revised.m (b) plot the heatmap of the position and distance between partner flies in a dyad.</p>
MERFISH imaging of 10,050 genes in individual U-2 OS cells.
<p>(A) A high-pass-filtered, single-z slice, single-bit image of a U-2 OS sample stained with encoding probes targeting 10,050 RNA species, imprinting a 69-bit binary barcode onto each RNA species, and with an Alexa 750-labeled readout probe that detects 1 of the 69 bits of the barcodes. (Scale bar, 10 μm.) (B) A zoomed-in image of the region marked with the red box in A. (Scale bar, 1 μm.) (C) All identified RNA molecules (colored markers) detected from all 6 imaged z slices in the region depicted in A. (Scale bar, 10 μm.) (D) A zoomed-in image of all identified RNA molecules detected from all 6 imaged z slices in the region marked with the red box in C. (Scale bar, 1 μm.) In C and D, different colored dots mark RNA molecules with distinct barcodes. (E) The copy number per cell of RNA transcripts of each gene determined by MERFISH versus the fragments per kilobase of transcript per million mapped reads determined by bulk RNA sequencing for the 10,050 measured genes. The Pearson correlation coefficient is 0.83. (F) The copy number per cell detected in the 10,050-gene measurements vs. the copy number per cell in the 130-gene measurements for the 128 genes that are commonly present in both experiments. The median value of the ratios of the 10,050-gene measurements to the 130-gene measurements for each of the 128 common genes is 0.82. (G) Normalized histograms of the FPKM-normalized copy number per cell for the 9,050 genes that were labeled using the nonoverlapping encoding-probe design (blue) and for the 1,000 genes that were labeled using the overlapping encoding-probe design (orange). The medians of the FPKM-normalized copy number per cell for the 2 groups of genes are indicated by the blue and orange dotted lines, respectively.</p>
Adding a toe joint to a prosthetic foot: walking biomechanics, metabolic rate and user preference of individuals with unilateral transtibial limb loss
<p>See ReadMe.mat</p>
Figure 3 in Population density and diet type interactively affect individual growth of an omnivorous soil-dwelling insect (Anomala cuprea, Coleoptera: Scarabaeidae)
Figure 3. Temporal changes in the coefficient of variation (CV) of larval fresh weight at two population densities and with two diets. Error bars indicate standard error. See Tab. 3 for details of statistical results.
Text-fig. 16. Za Hájovnou Cave. Possible lenght of time of layers of individual sections. This is not a stratigraphical table. in The Unique Record Of Za Hájovnou Cave
Text-fig. 16. Za Hájovnou Cave. Possible lenght of time of layers of individual sections. This is not a stratigraphical table.
Text-fig. 1. A plan of the passages of Za Hájovnou Cave in which individual sections were studied. After A. Tomica, with complements. Abyss I and II = Propástka 1 and 2; Birthday Corridor = Narozeninová chodba; Charnell-House (Kostnice) I and II = Chimney I–IV = Komín I–IV; Connecting Passage = Spojovací chodba; Corridor of Hope = Chodba naděje; Easter Corridor = Velikonoční jeskyně; Excavated Corridor = Vykopaná chodba; Plakát's dream = Plakátův sen; Vařek's Corridor = Vařekova chodba. in The Unique Record Of Za Hájovnou Cave
Text-fig. 1. A plan of the passages of Za Hájovnou Cave in which individual sections were studied. After A. Tomica, with complements. Abyss I and II = Propástka 1 and 2; Birthday Corridor = Narozeninová chodba; Charnell-House (Kostnice) I and II = Chimney I–IV = Komín I–IV; Connecting Passage = Spojovací chodba; Corridor of Hope = Chodba naděje; Easter Corridor = Velikonoční jeskyně; Excavated Corridor = Vykopaná chodba; Plakát's dream = Plakátův sen; Vařek's Corridor = Vařekova chodba.
Patient's characteristic included for treatment with individualized allogenic 3D bone block- a 6 years follow up.
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Ecotoxicants within the maximum permissible concentration affect clinical and laboratory parameters of patients with rheumatoid arthritis and individuals at risk at preclinical stages
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Individual Oil Palm Extraction in Honduras
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Data from: Effects of tracking devices on individual birds – a review of the evidence
We review long-term patterns of tracking device use and the reporting of the effects of such devices on individual birds. We assessed >3,400 primary references including >1,500 containing information as to whether effects were looked for and reported. Numbers of papers published increased at 4.4% per year. Research on foraging and energetics focussed on seabirds while work on habitat use and dispersal was focussed mainly on landbirds. Migration was the most common study topic overall and increased markedly from the turn of the century in all three bird groups. The proportion of studies reporting effects of devices on individuals declined at > 1% per year, while the proportion of studies providing no information on effects increased by ca. 0.7% per year. The presence of a control group increased the likelihood of a study reporting effects, (45% vs 33%). We modelled the probability of reporting effects separately for three bird groups and two attachment durations. Occurrence of effects was significantly related to attachment method (4 models), year (4 models) and relative device mass (1 model). Invasive attachment methods were associated with a high incidence of effects while tail and leg attachments showed relatively few effects. Probabilities of reporting effects declined over time and increased with relative device mass, however there was no device mass threshold below which effects were not observed. Approaches designed to minimize potential effects of devices on individual birds and to improve scientific rigour have advanced substantially. Nevertheless ca. 55% of studies contained no information on potential effects and in many more documentation was inadequate. We call for more systematic documentation of potential effects in peer-reviewed publications to support more rigorous science and to further improve bird welfare.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.