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Figs 1–6. 1 in Generic revision of the Microhoriini with new species and synonymies from the Palaearctic Region (Coleoptera: Anthicidae)
Figs 1–6. 1 – Liparoderus venator (Dufour, 1849), Spain, Zaragoza (D. Molina det., photo by B. Campo, www.biodiversidadvirtual.org.). 2 – Microhoria raveli (Pic, 1899), female internal reproductive structures, after DE MARZO (1996). 3–6 – Aedeagus in ventral view: 3 – Sapintus oceanicus (LaFerté- Sénectère, 1849), India, Tamil Nadu, Poovar (ZKDC); 4 – Anthelephila cyanea (Hope, 1833), South Africa, Western Cape prov., Greyton (ZKDC); 5 – Microhoria garavuti sp. nov., holotype; 6 – M. cervi sp. nov., paratype, Al Mughsayl (a = parameral plate, b = phallobase, c = baculi of endophallus, d = primary gonopore). Scale not specified.
Figs 64–67 in Generic revision of the Microhoriini with new species and synonymies from the Palaearctic Region (Coleoptera: Anthicidae)
Figs 64–67. Aedeagus: 64 – Microhoria longiceps (LaFerté-Sénectère, 1849) comb. nov., ventral view; 65 – M. callima (Baudi di Selve, 1877) comb. nov., ventral (left) and lateral (right) view; 66 – M. globipennis (Pic, 1897), Turkey, Cevlik (ZKDC), lateral view; 67 – same, apical portion in ventral view. Scale bars: 0.2 mm – A (Fig. 65), B (Figs 64, 66, 67).
A generic CERIF framework
<p>The main classes in a framework generalizing CERIF</p>
Figure 2 from: Palacios-Aguilar R, García-Vázquez UO (2020) A partial molecular phylogeny of Rhadinaea and related genera (Squamata, Dipsadidae) with comments on the generic assignment of Rhadinaea eduardoi. ZooKeys 943: 145-155. https://doi.org/10.3897/zookeys.943.50738
Figure 2 Adult male Coniophanes fissidens (MZFC-HE34194) from East of Río Santiago, Guerrero, Mexico. This specimen was obtained approximately 60 kilometers WNW of the type locality of C. f. dispersus. Compare this specimen with images 2, 3, and 4 from Mata-Silva et al. (2019).
Figure 1 from: Palacios-Aguilar R, García-Vázquez UO (2020) A partial molecular phylogeny of Rhadinaea and related genera (Squamata, Dipsadidae) with comments on the generic assignment of Rhadinaea eduardoi. ZooKeys 943: 145-155. https://doi.org/10.3897/zookeys.943.50738
Figure 1 Phylogenetic relationships and phylogenetic position of holotype of Rhadinaea eduardoi based on partial sequences of the mitochondrial gene Cytochrome b (cyt b). Numbers indicate the Bayesian posterior probabilities for each node.
Supplementary material 1 from: Palacios-Aguilar R, García-Vázquez UO (2020) A partial molecular phylogeny of Rhadinaea and related genera (Squamata, Dipsadidae) with comments on the generic assignment of Rhadinaea eduardoi. ZooKeys 943: 145-155. https://doi.org/10.3897/zookeys.943.50738
Table S1. Specimens examined
FIGURE 9 in A proposal for a new generic structure of the killifish family Aphaniidae, with the description of Aphaniops teimorii (Teleostei: Cyprinodontiformes)
FIGURE 9. Records of Aphanius species.
Indo-Asian Eriolaena expanded to include two Malagasy genera, and other generic realignments based on molecular phylogenetics of Dombeyoideae (Malvaceae)
<p class="AbstractTITLESECTION">Molecular phylogenetic analyses of Malvaceae subfamily Dombeyoideae based on a 6-marker dataset sampling all 21 currently accepted genera (including extinct <span class="Italic">Astyria</span>) yielded improved resolution and evidence for multiple generic circumscription problems. The taxonomy of the subfamily is adjusted with the synonymization of 10 genera (eight in current use) and the description of one new one, for a revised Dombeyoideae comprised of 14 genera and supported by morphological, anatomical, and/or palynological evidence. <span class="Italic">Eriolaena</span> is expanded from a narrow Indo-Asian group to include the Malagasy endemic genera <span class="Italic">Helmiopsis</span> and <span class="Italic">Helmiopsiella</span>, and a recently described species from continental Africa. A conspectus is presented of the new broadly circumscribed <span class="Italic">Eriolaena</span> with 27 species (28 taxa, including 3 new Malagasy species and 16 new combinations) and defined by a unique winged-seed morphology. A new monotypic Malagasy genus (<span class="Italic">Hafotra</span>), resolved as sister to <span class="Italic">Eriolaena</span>, is described. A conspectus is presented of a broadly circumscribed Mascarene-Malagasy <span class="Italic">Ruizia</span> (+<span class="Italic"> Astyria </span>and<span class="Italic"> Trochetia</span>, with 12 new combinations). Two other genera are expanded and recircumscribed: <span class="Italic">Melhania</span> (+<span class="Italic"> Trochetiopsis </span>and <span class="Italic">Paramelhania</span>, with one new name and two new combinations) and <span class="Italic">Corchoropsis </span>(+ <span class="Italic">Paradombeya</span>, with two new combinations). Additionally, two genera are typified, and 21 names are lectotypified.</p>
Phylogenomics of the Andean tetraploid clade of the American Amaryllidaceae (subfamily Amaryllidoideae): unlocking a polyploid generic radiation abetted by continental geodynamics
<p>The second large clade of the endemic American Amaryllidaceae subfam. Amaryllidoideae constitutes the tetraploid-derived (<i>n</i> = 23) Andean-centered tribes, most of which have 46 chromosomes. Despite progress in resolving phylogenetic relationships of the group with nrDNA, certain subclades were poorly resolved or weakly supported in those previous studies. Sequence capture using anchored hybrid enrichment was employed across 95 species of the clade along with five outgroups and generated sequences of 524 nuclear genes and a partial plastome. Maximum likelihood phylogenetic analyses were conducted on concatenated supermatrices, and coalescent species tree analyses were run on the gene trees, followed by hybridization network, age diversification and biogeographic analyses. The four tribes Clinantheae, Eucharideae, Eustephieae (the first branch), and Hymenocallideae (sister to <i>Clinanthus</i>) are resolved in all analyses with 100% support. Nuclear gene supermatrix and species tree results were largely in concordance; however cytonuclear discordance was evident. Hybridization network analysis identified significant reticulation in <i>Clinanthus</i>, <i>Hymenocallis</i>, <i>Stenomesson</i> and the subclade of Eucharideae comprising <i>Eucharis</i>, <i>Caliphruria</i>, and <i>Urceolina</i>. Our data support a previous treatment of the latter as a single genus, <i>Urceolina</i>, with the addition of <i>Eucrosia</i> <i>dodsonii</i>. Biogeographic analysis and penalized likelihood age estimation suggests an origin in the central Andean region (north and central Peru) for the complex in the mid-Oligocene, with more dispersals than vicariances in its history, but no extinctions. The Eucharideae experienced a sudden lineage radiation ca. 10 Mya. We tie much of the divergences in the Andean-centered lineages to the rise of the Andes, directly and indirectly, and suggest that the Amotape-Huancabamba Zone functioned as both a corrider (dispersal) and a barrier to migration (vicariance). Several taxonomic changes are made. This is the largest DNA sequence data set to be applied within Amaryllidaceae to date.The second large clade of the endemic American Amaryllidaceae subfam. Amaryllidoideae constitutes the tetraploid-derived (<i>n</i> = 23) Andean-centered tribes, most of which have 46 chromosomes. Despite progress in resolving phylogenetic relationships of the group with nrDNA, certain subclades were poorly resolved or weakly supported in those previous studies. Sequence capture using anchored hybrid enrichment was employed across 95 species of the clade along with five outgroups and generated sequences of 524 nuclear genes and a partial plastome. Maximum likelihood phylogenetic analyses were conducted on concatenated supermatrices, and coalescent species tree analyses were run on the gene trees, followed by hybridization network, age diversification and biogeographic analyses. The four tribes Clinantheae, Eucharideae, Eustephieae (the first branch), and Hymenocallideae (sister to <i>Clinanthus</i>) are resolved in all analyses with 100% support. Nuclear gene supermatrix and species tree results were largely in concordance; however cytonuclear discordance was evident. Hybridization network analysis identified significant reticulation in <i>Clinanthus</i>, <i>Hymenocallis</i>, <i>Stenomesson</i> and the subclade of Eucharideae comprising <i>Eucharis</i>, <i>Caliphruria</i>, and <i>Urceolina</i>. Our data support a previous treatment of the latter as a single genus, <i>Urceolina</i>, with the addition of <i>Eucrosia</i> <i>dodsonii</i>. Biogeographic analysis and penalized likelihood age estimation suggests an origin in the central Andean region (north and central Peru) for the complex in the mid-Oligocene, with more dispersals than vicariances in its history, but no extinctions. The Eucharideae experienced a sudden lineage radiation ca. 10 Mya. We tie much of the divergences in the Andean-centered lineages to the rise of the Andes, directly and indirectly, and suggest that the Amotape-Huancabamba Zone functioned as both a corrider (dispersal) and a barrier to migration (vicariance). Several taxonomic changes are made. This is the largest DNA sequence data set to be applied within Amaryllidaceae to date.</p>
Supplementary material 3 from: de Queiroz LP, Snak C (2020) Revisiting the taxonomy of Dioclea and related genera (Leguminosae, Papilionoideae), with new generic circumscriptions. PhytoKeys 164: 67-114. https://doi.org/10.3897/phytokeys.164.55441
Figure S3
Supplementary material 2 from: de Queiroz LP, Snak C (2020) Revisiting the taxonomy of Dioclea and related genera (Leguminosae, Papilionoideae), with new generic circumscriptions. PhytoKeys 164: 67-114. https://doi.org/10.3897/phytokeys.164.55441
Figure S2
Supplementary material 1 from: de Queiroz LP, Snak C (2020) Revisiting the taxonomy of Dioclea and related genera (Leguminosae, Papilionoideae), with new generic circumscriptions. PhytoKeys 164: 67-114. https://doi.org/10.3897/phytokeys.164.55441
Figure S1
Figure 4 from: de Queiroz LP, Snak C (2020) Revisiting the taxonomy of Dioclea and related genera (Leguminosae, Papilionoideae), with new generic circumscriptions. PhytoKeys 164: 67-114. https://doi.org/10.3897/phytokeys.164.55441
Figure 4 Lectotype of Taurophtalmum pulchrum Duchaiss. This watercolour painting housed at GOET is the only remnant of the original material of this species cited in Griesebach (1866).
Figure 5 from: de Queiroz LP, Snak C (2020) Revisiting the taxonomy of Dioclea and related genera (Leguminosae, Papilionoideae), with new generic circumscriptions. PhytoKeys 164: 67-114. https://doi.org/10.3897/phytokeys.164.55441
Figure 5 Original painting of Roxburgh icon 2328 (K) from Dolichos hexandrus that was used by Ralph (1849) to propose Mucuna hexandra Ralph. Note the androecium with six fertile stamens typical of Macropsychanthus hexander (Ralph) L.P. Queiroz & Snak. Available Roxburgh's Flora Indica (Kew 2006) at http://apps.kew.org/floraindica/displayImages.do?index=6.
Figure 3 from: de Queiroz LP, Snak C (2020) Revisiting the taxonomy of Dioclea and related genera (Leguminosae, Papilionoideae), with new generic circumscriptions. PhytoKeys 164: 67-114. https://doi.org/10.3897/phytokeys.164.55441
Figure 3 Representatives of the clade B. Macropsychanthus subg. Macropsychanthus (A–F). Macropsychanthus grandiflorus (Mart. ex Benth.) L.P. Queiroz & Snak A flowering vine (from Queiroz 15227). Macropsychanthus marginatus (Benth.) L.P. Queiroz & Snak B mature fruit showing dehiscence through the lower suture only C one of the valves removed to show the seeds with a long linear hilum (arrow; from Queiroz 15225). Macropsychanthus edule (Kuhlm.) L.P. Queiroz & Snak D the indehiscent and fleshy fruit decahing to release the seeds (from Popovkin 1546). Macropsychanthus lauterbachii Harms var. lauterbachiiE giant flowers with bluish petals (unvouchered). Macropsychanthus megacarpus (Rolfe) L.P. Queiroz & Snak F flower (from Queiroz 10135). Macropsychanthus subg. Platylobium (G–J). Macropsychanthus scabrus (Rich.) L.P. Queiroz & Snak G flowers (from Cardoso 2907). Macropsychanthus bicolor (Benth.) L.P. Queiroz & Snak H part of the pseudoracemous inflorescence I mature (left) and dehisced (right) fruits J seed, showing the short hilum (arrow; from Queiroz 15874). Photos A–C, F, H–J: L.P. Queiroz; D: A. Popovkin; E: A.D. Poulsen; G: D. Cardoso.
Figure 1 from: de Queiroz LP, Snak C (2020) Revisiting the taxonomy of Dioclea and related genera (Leguminosae, Papilionoideae), with new generic circumscriptions. PhytoKeys 164: 67-114. https://doi.org/10.3897/phytokeys.164.55441
Figure 1 Majority rule Bayesian tree and respective phylogram of the Dioclea clade resulting from the combined nuclear (ETS, ITS) and plastid (trnK/matK) analysis. Bayesian posterior probabilities are reported above branches and parsimony (left) and maximum likelihood (right) bootstrap support values are reported below branches. Bootstrap values below 50% are represented by hyphens. The coloured boxes represent the four genera as circumscribed here – names in colour represent the subgenera of the genus Dioclea (according to Maxwell 2011): blue Dioclea subg. Dioclea, red Dioclea subg. Platylobium, green Dioclea subg. Pachylobium – pictures: Cymbosema roseum (from Snak 1211), Cleobulia coccinea (from Queiroz 16029), Dioclea fimbriata (from Snak 1223), Macropsycanthus marginatus (from Queiroz 15225), Macropsycanthus lautherbachii (from Poulsen, unvouchered).
Figure 2 from: de Queiroz LP, Snak C (2020) Revisiting the taxonomy of Dioclea and related genera (Leguminosae, Papilionoideae), with new generic circumscriptions. PhytoKeys 164: 67-114. https://doi.org/10.3897/phytokeys.164.55441
Figure 2 Representatives of the clade A. Cleobulia coccinea (Mart. ex Benth.) L.P. Queiroz A flowering vine showing the arcuate inflorescences B detail of the inflorescence showing resupinate flowers; the inset highlights the wing petals (w) much shorter than the standard (s) and keel petals (k) C fruit (from Queiroz 16029). Cleobulia diocleoides Benth. D a resupinate flower showing the reduced wing (from Queiroz 16036). Cymbosema roseum Benth. E part of the inflorescence showing the bird pollinated flowers and the free adaxial stamen (arrow) F immature fruits showing the characteristic broad oblong fruit body and the long beak (from Cardoso2868). Dioclea virgata (Rich.) Amshoff G flowers (from Cardoso 2374) H fruits (from Cardoso 2100). Dioclea fimbriata Huber I flowers (from Snak 1223). Dioclea burkartii R.H. Maxwell J a seed showing the marbled testa and the elongate hilum encircling about half of its circumpherence (arrow; from Snak 826). Dioclea apurensisK flowers (from Queiroz 13035). Photos A–D, J–K: L.P. Queiroz; E–H: D. Cardoso; I: C. Snak.
Generic High Performance Exact Combinatorial Search
<p>Data for YewPar paper</p>
FIGURE 186. Allotype S in Generic relationships of New World Jerusalem crickets (Orthoptera: Stenopelmatoidea:Stenopelmatinae), including all known species of Stenopelmatus
FIGURE 186. Allotype S. zimapan when alive (top photo) and after preservation (bottom photo).
FIGURE 189. Calling drum adult male S in Generic relationships of New World Jerusalem crickets (Orthoptera: Stenopelmatoidea:Stenopelmatinae), including all known species of Stenopelmatus
FIGURE 189. Calling drum adult male S. zimapan (R11-4) with 52 single drums over 7.4s at 21°C.
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
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